Wall clock time and date at job start Sat Apr 11 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47118 * 2 1 4 4 N 1.28428 * 125.18629 * 275.64988 * 3 2 1 5 5 C 1.30836 * 110.98227 * 180.26167 * 4 3 2 6 6 C 1.39812 * 107.87564 * 359.73362 * 5 4 3 7 7 Cl 1.73601 * 127.33798 * 179.97438 * 6 5 4 8 8 C 1.36746 * 125.18630 * 95.45874 * 3 2 1 9 9 C 1.47036 * 126.90838 * 0.02562 * 8 3 2 10 10 O 1.21647 * 119.99781 * 268.83761 * 9 8 3 11 11 N 1.34776 * 119.99974 * 88.83354 * 9 8 3 12 12 C 1.46500 * 119.99841 * 184.67194 * 11 9 8 13 13 C 1.53001 * 109.47113 * 180.02562 * 12 11 9 14 14 C 1.53355 * 109.41315 * 295.12398 * 13 12 11 15 15 C 1.53196 * 109.14710 * 178.67705 * 14 13 12 16 16 N 1.46919 * 108.89225 * 54.57604 * 15 14 13 17 17 C 1.36935 * 120.63146 * 126.34350 * 16 15 14 18 18 H 1.08002 * 120.00241 * 325.74217 * 17 16 15 19 19 C 1.38816 * 120.00168 * 145.74213 * 17 16 15 20 20 N 1.31623 * 119.99957 * 344.20994 * 19 17 16 21 21 Si 1.86801 * 120.00098 * 164.21570 * 19 17 16 22 22 H 1.48501 * 109.47160 * 59.99414 * 21 19 17 23 23 H 1.48494 * 109.47187 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46933 * 299.99680 * 21 19 17 25 25 C 1.46927 * 118.74299 * 306.32123 * 16 15 14 26 26 C 1.53037 * 109.45862 * 174.99802 * 13 12 11 27 27 H 1.09006 * 109.46447 * 60.00556 * 1 2 3 28 28 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47676 * 300.00458 * 1 2 3 30 30 H 1.08995 * 109.47676 * 239.99542 * 2 1 3 31 31 H 1.09006 * 109.46447 * 119.99444 * 2 1 3 32 32 H 1.07995 * 126.06370 * 179.76355 * 5 4 3 33 33 H 0.96993 * 119.99768 * 4.66742 * 11 9 8 34 34 H 1.08998 * 109.47506 * 59.99642 * 12 11 9 35 35 H 1.08997 * 109.46569 * 299.99701 * 12 11 9 36 36 H 1.09000 * 109.46159 * 55.02153 * 13 12 11 37 37 H 1.08996 * 109.68909 * 58.70810 * 14 13 12 38 38 H 1.09008 * 109.47561 * 298.51060 * 14 13 12 39 39 H 1.08999 * 109.58254 * 294.71483 * 15 14 13 40 40 H 1.08997 * 109.58284 * 174.43565 * 15 14 13 41 41 H 0.96994 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.59301 * 173.39928 * 25 16 15 43 43 H 1.09010 * 109.58588 * 293.68374 * 25 16 15 44 44 H 1.09003 * 109.50196 * 61.43167 * 26 13 12 45 45 H 1.08994 * 109.49983 * 301.33084 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1676 2.1134 -1.0445 5 6 2.6254 3.2968 -0.7256 6 6 2.7828 3.3362 0.6631 7 17 3.3592 4.6649 1.6202 8 6 2.3813 2.0887 1.1125 9 6 2.3566 1.6180 2.5053 10 8 1.3650 1.7914 3.1884 11 7 3.4324 0.9943 3.0250 12 6 3.3722 0.4348 4.3776 13 6 4.7153 -0.2121 4.7221 14 6 4.9573 -1.4092 3.7946 15 6 6.3180 -2.0319 4.1226 16 7 6.3592 -2.3579 5.5546 17 6 6.6778 -3.6221 5.9734 18 1 6.3758 -4.4774 5.3872 19 6 7.3891 -3.8044 7.1515 20 7 8.0223 -2.7900 7.7016 21 14 7.4477 -5.4892 7.9560 22 1 8.0541 -6.4659 7.0160 23 1 8.2667 -5.4190 9.1927 24 1 6.0692 -5.9223 8.2986 25 6 6.0525 -1.3017 6.5288 26 6 4.6946 -0.6858 6.1772 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8428 4.1009 -1.4130 33 1 4.2464 0.9160 2.5035 34 1 2.5838 -0.3164 4.4253 35 1 3.1592 1.2309 5.0909 36 1 5.5144 0.5171 4.5888 37 1 4.9500 -1.0768 2.7566 38 1 4.1723 -2.1503 3.9453 39 1 7.1110 -1.3223 3.8864 40 1 6.4546 -2.9408 3.5368 41 1 8.5190 -2.9174 8.5249 42 1 6.0115 -1.7292 7.5306 43 1 6.8253 -0.5338 6.4906 44 1 3.9119 -1.4335 6.3054 45 1 4.4991 0.1624 6.8332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598686407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:59 Heat of formation + Delta-G solvation = 45.886330 kcal Electronic energy + Delta-G solvation = -27447.730652 eV Core-core repulsion = 23528.093901 eV Total energy + Delta-G solvation = -3919.636751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.96726 -39.72851 -37.85818 -36.88199 -35.10307 -34.94153 -33.00749 -31.39884 -30.62449 -30.17436 -29.80835 -27.04336 -24.73023 -24.23248 -23.06670 -22.25967 -21.89489 -21.11656 -20.24516 -19.23781 -18.43066 -16.81719 -16.63652 -16.50037 -15.79351 -15.70318 -15.06992 -14.81566 -14.71436 -14.29599 -14.06696 -13.88418 -13.61070 -13.41434 -13.29332 -13.17544 -12.58754 -12.47366 -12.42933 -12.16266 -11.99592 -11.94805 -11.78249 -11.39774 -11.05065 -10.81508 -10.77415 -10.61244 -10.51985 -10.30123 -10.27372 -10.00151 -9.65563 -9.64812 -9.49638 -9.23174 -9.08809 -8.51110 -6.62989 -5.83778 -3.32276 1.14061 1.43659 2.01188 2.13404 2.49130 2.93737 3.34855 3.40978 3.41899 4.04861 4.25426 4.44228 4.45553 4.54892 4.70618 4.85534 4.95504 5.02803 5.12070 5.15244 5.28834 5.30649 5.35436 5.53005 5.64059 5.72996 5.80839 5.82284 5.93074 6.01718 6.19441 6.24352 6.25399 6.35564 6.53665 6.60051 6.68317 6.75192 6.92244 7.17930 7.28328 7.54973 7.55096 7.76885 7.82369 8.44823 9.17793 9.79395 10.40124 11.24510 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.002469 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.184931 B =11335.886803 C =12021.920264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.260 5.260 4 N -0.270 5.270 5 C 0.023 3.977 6 C -0.118 4.118 7 Cl -0.019 7.019 8 C -0.009 4.009 9 C 0.588 3.412 10 O -0.515 6.515 11 N -0.707 5.707 12 C 0.122 3.878 13 C -0.090 4.090 14 C -0.127 4.127 15 C 0.145 3.855 16 N -0.590 5.590 17 C -0.261 4.261 18 H 0.061 0.939 19 C 0.010 3.990 20 N -0.899 5.899 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.176 3.824 26 C -0.132 4.132 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.195 0.805 33 H 0.405 0.595 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.053 0.947 41 H 0.255 0.745 42 H 0.077 0.923 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 10.516 -15.990 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.005 4.005 3 N -0.048 5.048 4 N -0.100 5.100 5 C -0.155 4.155 6 C -0.156 4.156 7 Cl 0.010 6.990 8 C -0.139 4.139 9 C 0.369 3.631 10 O -0.389 6.389 11 N -0.358 5.358 12 C -0.001 4.001 13 C -0.109 4.109 14 C -0.167 4.167 15 C 0.019 3.981 16 N -0.313 5.313 17 C -0.391 4.391 18 H 0.079 0.921 19 C -0.190 4.190 20 N -0.542 5.542 21 Si 0.731 3.269 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.050 3.950 26 C -0.172 4.172 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.128 0.872 31 H 0.120 0.880 32 H 0.212 0.788 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.095 0.905 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.839 9.886 -16.136 22.868 hybrid contribution 0.813 -0.148 0.943 1.254 sum -12.026 9.738 -15.193 21.686 Atomic orbital electron populations 1.22187 0.92850 1.04011 1.03912 1.22163 0.96686 0.75841 1.05786 1.45770 1.45082 1.12303 1.01690 1.73231 1.19170 1.04123 1.13449 1.23524 1.03484 0.95745 0.92752 1.21278 1.10942 0.90608 0.92776 1.98367 1.86950 1.43130 1.70591 1.21291 1.08956 0.93636 0.90034 1.16852 0.83922 0.78261 0.84068 1.90874 1.32998 1.54708 1.60352 1.46098 1.15013 1.56372 1.18324 1.21733 0.99410 0.97705 0.81220 1.21380 0.94578 0.97212 0.97757 1.22146 1.01012 0.97041 0.96482 1.20887 0.92505 0.97262 0.87465 1.43951 1.79859 1.08420 0.99050 1.19051 1.29222 0.83607 1.07174 0.92135 1.25202 0.96219 0.97097 1.00485 1.70016 1.33072 1.30474 1.20597 0.86406 0.77630 0.84084 0.78813 1.20799 1.21591 1.20903 1.20663 0.89633 0.90036 0.94690 1.22167 1.02233 0.99636 0.93153 0.91156 0.89602 0.91218 0.87232 0.87955 0.78814 0.75983 0.91177 0.91126 0.91033 0.93641 0.92142 0.96598 0.92887 0.93508 0.90501 0.96177 0.92303 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.11 0.86 6.91 -4.04 -0.03 0.83 16 3 N -0.26 -2.67 3.35 -57.10 -0.19 -2.86 16 4 N -0.27 -2.85 11.89 30.61 0.36 -2.48 16 5 C 0.02 0.22 12.04 -17.39 -0.21 0.01 16 6 C -0.12 -1.32 6.89 -38.88 -0.27 -1.58 16 7 Cl -0.02 -0.20 29.24 -51.86 -1.52 -1.72 16 8 C -0.01 -0.10 6.72 -82.00 -0.55 -0.65 16 9 C 0.59 7.61 6.91 -12.69 -0.09 7.52 16 10 O -0.52 -8.38 17.12 5.24 0.09 -8.29 16 11 N -0.71 -8.14 5.27 -61.51 -0.32 -8.47 16 12 C 0.12 1.56 5.07 -4.04 -0.02 1.54 16 13 C -0.09 -1.31 2.19 -90.42 -0.20 -1.51 16 14 C -0.13 -1.93 5.27 -26.45 -0.14 -2.07 16 15 C 0.15 2.85 6.50 -3.71 -0.02 2.82 16 16 N -0.59 -14.14 2.96 -172.32 -0.51 -14.65 16 17 C -0.26 -6.97 9.51 -15.06 -0.14 -7.11 16 18 H 0.06 1.60 7.88 -52.49 -0.41 1.18 16 19 C 0.01 0.27 4.90 -17.43 -0.09 0.18 16 20 N -0.90 -25.63 11.60 55.49 0.64 -24.98 16 21 Si 0.90 21.22 29.58 -169.99 -5.03 16.20 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.18 3.96 5.27 -3.71 -0.02 3.94 16 26 C -0.13 -2.29 5.36 -26.61 -0.14 -2.43 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.73 7.64 -51.93 -0.40 0.33 16 32 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.40 4.09 7.64 -40.82 -0.31 3.78 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.56 7.16 -51.93 -0.37 0.19 16 38 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 41 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.08 1.96 6.51 -51.93 -0.34 1.62 16 43 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -31.62 384.93 -9.08 -40.70 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.88 Total: 0.08 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.54 Total: 0.67 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.02 Total: -53.44 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.62 -9.08 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598686407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.585 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds