Wall clock time and date at job start Sat Apr 11 2020 06:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47118 * 2 1 4 4 N 1.28428 * 125.18629 * 275.64988 * 3 2 1 5 5 C 1.30836 * 110.98227 * 180.26167 * 4 3 2 6 6 C 1.39812 * 107.87564 * 359.73362 * 5 4 3 7 7 Cl 1.73601 * 127.33798 * 179.97438 * 6 5 4 8 8 C 1.36746 * 125.18630 * 95.45874 * 3 2 1 9 9 C 1.47036 * 126.90838 * 0.02562 * 8 3 2 10 10 O 1.21647 * 119.99781 * 268.83761 * 9 8 3 11 11 N 1.34776 * 119.99974 * 88.83354 * 9 8 3 12 12 C 1.46500 * 119.99841 * 184.67194 * 11 9 8 13 13 C 1.53001 * 109.47113 * 180.02562 * 12 11 9 14 14 C 1.53355 * 109.41315 * 295.12398 * 13 12 11 15 15 C 1.53196 * 109.14710 * 178.67705 * 14 13 12 16 16 N 1.46919 * 108.89225 * 54.57604 * 15 14 13 17 17 C 1.36935 * 120.63146 * 126.34350 * 16 15 14 18 18 H 1.08002 * 120.00241 * 325.74217 * 17 16 15 19 19 C 1.38816 * 120.00168 * 145.74213 * 17 16 15 20 20 N 1.31623 * 119.99957 * 344.20994 * 19 17 16 21 21 Si 1.86801 * 120.00098 * 164.21570 * 19 17 16 22 22 H 1.48501 * 109.47160 * 59.99414 * 21 19 17 23 23 H 1.48494 * 109.47187 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46933 * 299.99680 * 21 19 17 25 25 C 1.46927 * 118.74299 * 306.32123 * 16 15 14 26 26 C 1.53037 * 109.45862 * 174.99802 * 13 12 11 27 27 H 1.09006 * 109.46447 * 60.00556 * 1 2 3 28 28 H 1.08999 * 109.47028 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47676 * 300.00458 * 1 2 3 30 30 H 1.08995 * 109.47676 * 239.99542 * 2 1 3 31 31 H 1.09006 * 109.46447 * 119.99444 * 2 1 3 32 32 H 1.07995 * 126.06370 * 179.76355 * 5 4 3 33 33 H 0.96993 * 119.99768 * 4.66742 * 11 9 8 34 34 H 1.08998 * 109.47506 * 59.99642 * 12 11 9 35 35 H 1.08997 * 109.46569 * 299.99701 * 12 11 9 36 36 H 1.09000 * 109.46159 * 55.02153 * 13 12 11 37 37 H 1.08996 * 109.68909 * 58.70810 * 14 13 12 38 38 H 1.09008 * 109.47561 * 298.51060 * 14 13 12 39 39 H 1.08999 * 109.58254 * 294.71483 * 15 14 13 40 40 H 1.08997 * 109.58284 * 174.43565 * 15 14 13 41 41 H 0.96994 * 119.99644 * 179.97438 * 20 19 17 42 42 H 1.09001 * 109.59301 * 173.39928 * 25 16 15 43 43 H 1.09010 * 109.58588 * 293.68374 * 25 16 15 44 44 H 1.09003 * 109.50196 * 61.43167 * 26 13 12 45 45 H 1.08994 * 109.49983 * 301.33084 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1676 2.1134 -1.0445 5 6 2.6254 3.2968 -0.7256 6 6 2.7828 3.3362 0.6631 7 17 3.3592 4.6649 1.6202 8 6 2.3813 2.0887 1.1125 9 6 2.3566 1.6180 2.5053 10 8 1.3650 1.7914 3.1884 11 7 3.4324 0.9943 3.0250 12 6 3.3722 0.4348 4.3776 13 6 4.7153 -0.2121 4.7221 14 6 4.9573 -1.4092 3.7946 15 6 6.3180 -2.0319 4.1226 16 7 6.3592 -2.3579 5.5546 17 6 6.6778 -3.6221 5.9734 18 1 6.3758 -4.4774 5.3872 19 6 7.3891 -3.8044 7.1515 20 7 8.0223 -2.7900 7.7016 21 14 7.4477 -5.4892 7.9560 22 1 8.0541 -6.4659 7.0160 23 1 8.2667 -5.4190 9.1927 24 1 6.0692 -5.9223 8.2986 25 6 6.0525 -1.3017 6.5288 26 6 4.6946 -0.6858 6.1772 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.8428 4.1009 -1.4130 33 1 4.2464 0.9160 2.5035 34 1 2.5838 -0.3164 4.4253 35 1 3.1592 1.2309 5.0909 36 1 5.5144 0.5171 4.5888 37 1 4.9500 -1.0768 2.7566 38 1 4.1723 -2.1503 3.9453 39 1 7.1110 -1.3223 3.8864 40 1 6.4546 -2.9408 3.5368 41 1 8.5190 -2.9174 8.5249 42 1 6.0115 -1.7292 7.5306 43 1 6.8253 -0.5338 6.4906 44 1 3.9119 -1.4335 6.3054 45 1 4.4991 0.1624 6.8332 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598686407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:58 Heat of formation + Delta-G solvation = 26.436304 kcal Electronic energy + Delta-G solvation = -27448.574069 eV Core-core repulsion = 23528.093901 eV Total energy + Delta-G solvation = -3920.480168 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.73940 -40.79868 -39.30539 -37.69796 -36.48166 -35.58025 -34.57392 -32.76032 -31.88854 -31.37095 -30.83725 -28.49971 -26.07536 -25.17470 -24.21196 -23.66436 -22.81320 -22.44878 -21.22337 -20.63012 -19.35010 -18.60652 -17.59606 -17.35177 -16.85594 -16.63003 -16.62192 -15.93407 -15.63306 -15.53058 -15.31421 -15.11433 -14.95077 -14.77894 -14.41263 -14.07571 -13.91388 -13.87160 -13.42616 -13.14085 -12.98360 -12.90113 -12.82365 -12.79330 -12.57212 -12.36438 -12.31982 -12.05651 -11.85329 -11.67808 -11.61082 -11.52389 -11.15461 -11.08443 -10.54363 -10.42255 -10.27832 -9.88939 -8.58512 -7.87529 -5.38962 0.31010 0.64846 1.09744 1.38181 1.46675 1.48691 1.55371 1.63902 2.03947 2.51008 3.27276 3.35238 3.42592 3.71986 3.81018 3.85968 3.89162 3.92776 4.07120 4.12247 4.19895 4.27394 4.49341 4.54873 4.63886 4.68432 4.72014 4.73496 4.78555 4.93477 5.02011 5.09000 5.10952 5.12256 5.20516 5.28609 5.31494 5.42574 5.51692 5.52236 5.67244 5.76693 6.22907 6.42938 6.78828 6.85698 7.17394 7.87524 8.41797 9.17774 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018140 B = 0.002469 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.184931 B =11335.886803 C =12021.920264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.257 5.257 4 N -0.277 5.277 5 C 0.026 3.974 6 C -0.128 4.128 7 Cl -0.021 7.021 8 C -0.024 4.024 9 C 0.596 3.404 10 O -0.552 6.552 11 N -0.695 5.695 12 C 0.135 3.865 13 C -0.079 4.079 14 C -0.113 4.113 15 C 0.139 3.861 16 N -0.610 5.610 17 C -0.269 4.269 18 H 0.062 0.938 19 C -0.044 4.044 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.274 1.274 23 H -0.295 1.295 24 H -0.277 1.277 25 C 0.182 3.818 26 C -0.121 4.121 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.045 0.955 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.223 0.777 33 H 0.415 0.585 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.012 0.988 40 H 0.050 0.950 41 H 0.250 0.750 42 H 0.039 0.961 43 H -0.002 1.002 44 H 0.056 0.944 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.916 10.425 -17.950 24.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.046 5.046 4 N -0.108 5.108 5 C -0.152 4.152 6 C -0.166 4.166 7 Cl 0.008 6.992 8 C -0.155 4.155 9 C 0.378 3.622 10 O -0.428 6.428 11 N -0.346 5.346 12 C 0.012 3.988 13 C -0.098 4.098 14 C -0.152 4.152 15 C 0.014 3.986 16 N -0.334 5.334 17 C -0.399 4.399 18 H 0.079 0.921 19 C -0.240 4.240 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.203 1.203 25 C 0.056 3.944 26 C -0.160 4.160 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.125 0.875 32 H 0.239 0.761 33 H 0.252 0.748 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.016 0.984 44 H 0.074 0.926 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.855 9.787 -18.143 24.838 hybrid contribution 1.151 -0.106 1.488 1.884 sum -12.704 9.681 -16.655 23.076 Atomic orbital electron populations 1.22148 0.92605 1.05066 1.02539 1.22470 0.96898 0.74820 1.07107 1.46050 1.44484 1.12945 1.01077 1.73243 1.19413 1.04562 1.13550 1.24001 1.02471 0.96113 0.92582 1.21469 1.11224 0.90432 0.93460 1.98365 1.86964 1.43180 1.70738 1.21162 1.10259 0.94322 0.89799 1.16918 0.83380 0.77546 0.84348 1.90860 1.34340 1.56243 1.61387 1.45945 1.15175 1.55702 1.17816 1.21464 0.97934 0.97567 0.81832 1.21207 0.95832 0.97125 0.95634 1.21985 0.97798 0.96799 0.98628 1.21065 0.95074 0.97495 0.84961 1.44241 1.80161 1.07902 1.01067 1.19389 1.28306 0.85007 1.07208 0.92067 1.25933 0.96426 1.00362 1.01303 1.70162 1.34359 1.32366 1.20830 0.85415 0.77579 0.80280 0.77594 1.20009 1.22112 1.20323 1.20472 0.91862 0.89116 0.92954 1.21956 0.98535 0.99882 0.95652 0.91411 0.87371 0.93563 0.85043 0.87495 0.76086 0.74832 0.90974 0.91272 0.90743 0.89923 0.92361 0.96956 0.93103 0.94101 0.94229 0.98432 0.92552 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 71.98 0.74 -1.29 16 2 C 0.11 1.33 6.91 86.38 0.60 1.92 16 3 N -0.26 -4.74 3.35 -334.58 -1.12 -5.86 16 4 N -0.28 -5.23 11.89 -57.06 -0.68 -5.91 16 5 C 0.03 0.44 12.04 85.22 1.03 1.46 16 6 C -0.13 -2.62 6.89 22.72 0.16 -2.46 16 7 Cl -0.02 -0.42 29.24 -2.72 -0.08 -0.50 16 8 C -0.02 -0.53 6.72 40.76 0.27 -0.25 16 9 C 0.60 14.41 6.91 86.55 0.60 15.01 16 10 O -0.55 -17.35 17.12 -4.18 -0.07 -17.43 16 11 N -0.69 -14.30 5.27 -466.75 -2.46 -16.76 16 12 C 0.14 3.13 5.07 86.38 0.44 3.57 16 13 C -0.08 -2.13 2.19 -10.66 -0.02 -2.15 16 14 C -0.11 -3.13 5.27 30.78 0.16 -2.97 16 15 C 0.14 5.32 6.50 86.37 0.56 5.88 16 16 N -0.61 -29.43 2.96 -699.08 -2.07 -31.50 16 17 C -0.27 -14.48 9.51 84.03 0.80 -13.68 16 18 H 0.06 3.22 7.88 -2.91 -0.02 3.20 16 19 C -0.04 -2.42 4.90 84.86 0.42 -2.01 16 20 N -0.93 -54.74 11.60 21.65 0.25 -54.49 16 21 Si 0.96 44.17 29.58 68.60 2.03 46.20 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.18 8.36 5.27 86.36 0.45 8.81 16 26 C -0.12 -4.08 5.36 30.67 0.16 -3.91 16 27 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 1.25 7.64 -2.38 -0.02 1.23 16 32 H 0.22 2.25 8.06 -2.91 -0.02 2.22 16 33 H 0.41 7.08 7.64 -92.71 -0.71 6.38 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.71 7.16 -2.39 -0.02 1.69 16 38 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 39 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 40 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.04 2.09 6.51 -2.39 -0.02 2.07 16 43 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 44 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.72 384.93 2.46 -67.26 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 0.29 Total: 11.07 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.36 Total: 7.92 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -6.07 Total: -114.52 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.07 Total: -17.43 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -0.42 SS G_CDS: -0.08 Total: -0.50 kcal Total: -69.72 2.46 -67.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598686407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.697 kcal (2) G-P(sol) polarization free energy of solvation -69.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds