Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48498 * 109.46846 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47333 * 30.00115 * 3 2 1 6 6 H 1.48502 * 109.46726 * 150.00055 * 3 2 1 7 7 C 1.38816 * 119.99241 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99299 * 200.16481 * 7 2 1 9 9 N 1.36931 * 120.00241 * 20.16330 * 7 2 1 10 10 C 1.46498 * 120.00116 * 38.25639 * 9 7 2 11 11 N 1.46503 * 109.47288 * 89.99745 * 10 9 7 12 12 C 1.34047 * 122.80073 * 270.20677 * 11 10 9 13 13 O 1.21222 * 125.42997 * 0.02562 * 12 11 10 14 14 C 1.51585 * 109.13889 * 180.26893 * 12 11 10 15 15 C 1.53285 * 103.15743 * 359.73580 * 14 12 11 16 16 C 1.53359 * 111.10135 * 239.55950 * 15 14 12 17 17 C 1.54557 * 102.13648 * 264.07414 * 16 15 14 18 18 C 1.51471 * 105.22293 * 334.57236 * 17 16 15 19 19 C 1.38434 * 130.36538 * 196.62217 * 18 17 16 20 20 C 1.38092 * 120.30206 * 180.15180 * 19 18 17 21 21 C 1.38252 * 119.88447 * 0.02691 * 20 19 18 22 22 C 1.38063 * 119.95218 * 359.97438 * 21 20 19 23 23 C 1.38491 * 109.77943 * 16.75180 * 18 17 16 24 24 C 1.34230 * 122.80010 * 90.00085 * 11 10 9 25 25 O 1.21224 * 125.61150 * 0.02562 * 24 11 10 26 26 C 1.46498 * 119.99790 * 218.24937 * 9 7 2 27 27 C 1.52998 * 117.49977 * 14.18399 * 26 9 7 28 28 C 1.52998 * 117.50082 * 305.52111 * 26 9 7 29 29 H 0.97000 * 119.99402 * 354.95737 * 1 2 3 30 30 H 1.09002 * 109.46706 * 329.99728 * 10 9 7 31 31 H 1.09001 * 109.46968 * 209.99475 * 10 9 7 32 32 H 1.08994 * 110.67756 * 241.31431 * 14 12 11 33 33 H 1.09002 * 110.67453 * 118.15346 * 14 12 11 34 34 H 1.09006 * 110.86837 * 22.23131 * 16 15 14 35 35 H 1.08996 * 110.87193 * 145.90397 * 16 15 14 36 36 H 1.09002 * 110.29313 * 215.63961 * 17 16 15 37 37 H 1.09000 * 110.38047 * 93.55170 * 17 16 15 38 38 H 1.08001 * 119.84979 * 0.17991 * 19 18 17 39 39 H 1.08000 * 120.05380 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.02620 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.83684 * 179.97438 * 22 21 20 42 42 H 1.09006 * 115.55214 * 159.85037 * 26 9 7 43 43 H 1.08999 * 117.50095 * 359.97438 * 27 26 9 44 44 H 1.09003 * 117.50147 * 145.01853 * 27 26 9 45 45 H 1.09005 * 117.49991 * 214.97788 * 28 26 9 46 46 H 1.08995 * 117.50280 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0405 -1.2311 0.3219 9 7 1.3883 -2.3516 -0.4098 10 6 0.4539 -2.3171 -1.5376 11 7 1.1841 -2.5591 -2.7844 12 6 1.7254 -1.5721 -3.5122 13 8 1.6808 -0.3919 -3.2391 14 6 2.3968 -2.1665 -4.7343 15 6 2.1488 -3.6704 -4.5719 16 6 3.4713 -4.4436 -4.5006 17 6 3.6599 -4.9005 -5.9650 18 6 2.2634 -4.9493 -6.5495 19 6 1.7921 -5.5669 -7.6953 20 6 0.4578 -5.4735 -8.0386 21 6 -0.4119 -4.7597 -7.2351 22 6 0.0551 -4.1427 -6.0917 23 6 1.3928 -4.2348 -5.7436 24 6 1.3705 -3.7880 -3.2912 25 8 0.9718 -4.8221 -2.7998 26 6 1.6576 -3.6156 0.2800 27 6 2.3662 -3.5444 1.6342 28 6 3.1176 -4.0564 0.4027 29 1 -0.4849 0.8368 0.0738 30 1 -0.0264 -1.3397 -1.5816 31 1 -0.3042 -3.0890 -1.4049 32 1 3.4650 -1.9499 -4.7302 33 1 1.9313 -1.7960 -5.6476 34 1 4.2867 -3.7904 -4.1896 35 1 3.3840 -5.3017 -3.8342 36 1 4.1177 -5.8892 -5.9966 37 1 4.2731 -4.1831 -6.5105 38 1 2.4709 -6.1247 -8.3233 39 1 0.0943 -5.9572 -8.9332 40 1 -1.4558 -4.6848 -7.5017 41 1 -0.6258 -3.5852 -5.4657 42 1 0.9065 -4.3940 0.1455 43 1 2.6325 -2.5571 2.0116 44 1 2.0816 -4.2761 2.3903 45 1 3.3269 -5.1248 0.3492 46 1 3.8777 -3.4062 -0.0302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000781142365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 21.114940 kcal Electronic energy + Delta-G solvation = -30912.984004 eV Core-core repulsion = 26962.413183 eV Total energy + Delta-G solvation = -3950.570821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.85893 -39.55799 -37.79743 -37.02453 -36.01091 -34.84368 -33.41599 -32.01339 -30.65077 -29.62917 -28.90513 -26.22634 -25.67251 -23.76573 -22.86814 -22.57165 -21.40246 -21.13473 -20.63280 -19.83408 -18.90274 -17.13205 -16.59600 -16.23992 -15.72467 -15.64203 -15.45906 -15.14612 -15.02726 -14.58471 -14.37684 -13.88480 -13.71820 -13.64646 -13.47275 -13.37734 -12.95125 -12.86755 -12.76398 -12.15200 -11.89016 -11.88959 -11.66119 -11.37245 -11.23554 -11.03878 -10.93533 -10.83676 -10.81522 -10.62162 -10.59377 -10.07257 -9.98330 -9.75580 -9.51726 -9.26169 -8.90936 -8.87668 -8.61236 -8.48924 -6.72728 -5.98679 -3.54565 1.20498 1.29560 2.14914 3.20583 3.39845 3.43562 3.44272 3.51195 3.64751 4.14811 4.36391 4.41127 4.46662 4.65369 4.79451 4.91691 4.93247 4.95760 4.98402 5.13339 5.19885 5.27826 5.34194 5.41031 5.49845 5.55768 5.72183 5.75553 5.81544 5.89023 5.89655 6.00415 6.05278 6.06330 6.11392 6.22528 6.33576 6.41132 6.45187 6.51894 6.55152 6.61811 6.87429 6.93271 7.13266 7.14557 7.68732 7.75529 8.03524 8.35640 8.58212 8.98904 9.62336 10.15632 11.07740 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.004146 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.069541 B = 6752.483559 C = 7389.490280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.042 3.958 3 Si 0.904 3.096 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.280 4.280 8 H 0.063 0.937 9 N -0.532 5.532 10 C 0.334 3.666 11 N -0.572 5.572 12 C 0.523 3.477 13 O -0.462 6.462 14 C -0.149 4.149 15 C -0.064 4.064 16 C -0.099 4.099 17 C -0.079 4.079 18 C -0.086 4.086 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.070 4.070 24 C 0.541 3.459 25 O -0.487 6.487 26 C 0.122 3.878 27 C -0.189 4.189 28 C -0.222 4.222 29 H 0.261 0.739 30 H 0.134 0.866 31 H 0.063 0.937 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.073 0.927 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -9.855 -15.016 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.160 4.160 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.409 4.409 8 H 0.080 0.920 9 N -0.248 5.248 10 C 0.128 3.872 11 N -0.319 5.319 12 C 0.309 3.691 13 O -0.331 6.331 14 C -0.189 4.189 15 C -0.067 4.067 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.086 4.086 19 C -0.128 4.128 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.071 4.071 24 C 0.327 3.673 25 O -0.359 6.359 26 C 0.013 3.987 27 C -0.228 4.228 28 C -0.262 4.262 29 H 0.071 0.929 30 H 0.151 0.849 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.092 0.908 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.283 -9.543 -14.537 17.697 hybrid contribution 0.475 0.792 0.087 0.928 sum 3.759 -8.751 -14.450 17.306 Atomic orbital electron populations 1.69776 1.05861 1.26762 1.50281 1.25132 0.95012 0.98905 0.96987 0.86291 0.79121 0.82847 0.78438 1.19996 1.21706 1.20462 1.18851 0.94262 0.84444 1.43323 0.91968 1.43790 1.49616 1.03287 1.28105 1.21779 0.87607 1.04078 0.73712 1.48948 1.49776 1.07728 1.25466 1.20657 0.77943 0.86195 0.84276 1.90788 1.55151 1.15009 1.72173 1.22619 1.04170 0.92660 0.99448 1.20333 0.96839 0.96371 0.93183 1.22233 0.93947 1.00363 0.97100 1.21110 0.93341 1.02359 0.94779 1.20645 0.95948 0.97049 0.94922 1.20554 0.95684 1.00265 0.96322 1.21042 0.93340 0.99345 0.99709 1.20993 0.99815 0.98147 0.94750 1.20655 0.94132 0.99469 0.96998 1.19758 0.93647 0.98625 0.95055 1.20197 0.78316 0.83835 0.84903 1.90669 1.49431 1.30923 1.64917 1.21245 0.91899 0.90356 0.95175 1.23066 1.06254 1.02129 0.91353 1.23289 0.99395 0.99024 1.04503 0.92874 0.84911 0.91873 0.86730 0.87145 0.89360 0.89502 0.90171 0.89719 0.86179 0.85872 0.85732 0.86308 0.88956 0.88160 0.90624 0.90813 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.88 11.44 55.49 0.63 -24.24 16 2 C 0.04 1.14 4.98 -17.43 -0.09 1.06 16 3 Si 0.90 22.26 29.60 -169.99 -5.03 17.22 16 4 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.28 -7.48 8.03 -15.06 -0.12 -7.60 16 8 H 0.06 1.70 7.23 -52.48 -0.38 1.32 16 9 N -0.53 -13.08 3.02 -169.34 -0.51 -13.59 16 10 C 0.33 7.85 5.76 -63.75 -0.37 7.49 16 11 N -0.57 -11.63 2.81 -118.96 -0.33 -11.96 16 12 C 0.52 10.30 8.10 -10.88 -0.09 10.21 16 13 O -0.46 -10.94 17.49 5.61 0.10 -10.84 16 14 C -0.15 -2.10 6.33 -27.30 -0.17 -2.27 16 15 C -0.06 -0.91 0.82 -156.79 -0.13 -1.04 16 16 C -0.10 -1.18 6.12 -25.73 -0.16 -1.33 16 17 C -0.08 -0.75 6.78 -26.69 -0.18 -0.93 16 18 C -0.09 -0.97 6.15 -104.08 -0.64 -1.61 16 19 C -0.11 -1.10 10.03 -39.56 -0.40 -1.49 16 20 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 21 C -0.12 -1.28 10.04 -39.64 -0.40 -1.68 16 22 C -0.09 -1.23 9.81 -39.54 -0.39 -1.62 16 23 C -0.07 -0.94 4.83 -104.55 -0.51 -1.44 16 24 C 0.54 9.93 6.58 -11.41 -0.08 9.85 16 25 O -0.49 -10.02 17.45 5.61 0.10 -9.92 16 26 C 0.12 2.69 6.61 -67.93 -0.45 2.24 16 27 C -0.19 -3.85 9.81 -26.69 -0.26 -4.12 16 28 C -0.22 -4.39 10.09 -26.69 -0.27 -4.66 16 29 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 30 H 0.13 3.52 5.22 -51.93 -0.27 3.25 16 31 H 0.06 1.45 7.74 -51.93 -0.40 1.05 16 32 H 0.11 1.38 7.35 -51.93 -0.38 1.00 16 33 H 0.11 1.37 7.76 -51.93 -0.40 0.97 16 34 H 0.09 0.94 7.46 -51.93 -0.39 0.55 16 35 H 0.09 1.14 7.92 -51.93 -0.41 0.73 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.09 2.00 8.10 -51.93 -0.42 1.58 16 43 H 0.10 2.23 6.97 -51.93 -0.36 1.87 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 46 H 0.08 1.73 7.99 -51.93 -0.41 1.31 16 LS Contribution 380.90 15.07 5.74 5.74 Total: -1.00 -31.44 380.90 -10.74 -42.19 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -6.35 Total: 5.88 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -5.09 Total: -0.47 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: -0.21 Total: -49.79 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.20 Total: -20.77 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.44 -10.74 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781142365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.301 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds