Wall clock time and date at job start Sat Apr 11 2020 06:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00178 * 2 1 4 4 H 1.48498 * 109.46846 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47333 * 30.00115 * 3 2 1 6 6 H 1.48502 * 109.46726 * 150.00055 * 3 2 1 7 7 C 1.38816 * 119.99241 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99299 * 200.16481 * 7 2 1 9 9 N 1.36931 * 120.00241 * 20.16330 * 7 2 1 10 10 C 1.46498 * 120.00116 * 38.25639 * 9 7 2 11 11 N 1.46503 * 109.47288 * 89.99745 * 10 9 7 12 12 C 1.34047 * 122.80073 * 270.20677 * 11 10 9 13 13 O 1.21222 * 125.42997 * 0.02562 * 12 11 10 14 14 C 1.51585 * 109.13889 * 180.26893 * 12 11 10 15 15 C 1.53285 * 103.15743 * 359.73580 * 14 12 11 16 16 C 1.53359 * 111.10135 * 239.55950 * 15 14 12 17 17 C 1.54557 * 102.13648 * 264.07414 * 16 15 14 18 18 C 1.51471 * 105.22293 * 334.57236 * 17 16 15 19 19 C 1.38434 * 130.36538 * 196.62217 * 18 17 16 20 20 C 1.38092 * 120.30206 * 180.15180 * 19 18 17 21 21 C 1.38252 * 119.88447 * 0.02691 * 20 19 18 22 22 C 1.38063 * 119.95218 * 359.97438 * 21 20 19 23 23 C 1.38491 * 109.77943 * 16.75180 * 18 17 16 24 24 C 1.34230 * 122.80010 * 90.00085 * 11 10 9 25 25 O 1.21224 * 125.61150 * 0.02562 * 24 11 10 26 26 C 1.46498 * 119.99790 * 218.24937 * 9 7 2 27 27 C 1.52998 * 117.49977 * 14.18399 * 26 9 7 28 28 C 1.52998 * 117.50082 * 305.52111 * 26 9 7 29 29 H 0.97000 * 119.99402 * 354.95737 * 1 2 3 30 30 H 1.09002 * 109.46706 * 329.99728 * 10 9 7 31 31 H 1.09001 * 109.46968 * 209.99475 * 10 9 7 32 32 H 1.08994 * 110.67756 * 241.31431 * 14 12 11 33 33 H 1.09002 * 110.67453 * 118.15346 * 14 12 11 34 34 H 1.09006 * 110.86837 * 22.23131 * 16 15 14 35 35 H 1.08996 * 110.87193 * 145.90397 * 16 15 14 36 36 H 1.09002 * 110.29313 * 215.63961 * 17 16 15 37 37 H 1.09000 * 110.38047 * 93.55170 * 17 16 15 38 38 H 1.08001 * 119.84979 * 0.17991 * 19 18 17 39 39 H 1.08000 * 120.05380 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.02620 * 179.97438 * 21 20 19 41 41 H 1.07999 * 119.83684 * 179.97438 * 22 21 20 42 42 H 1.09006 * 115.55214 * 159.85037 * 26 9 7 43 43 H 1.08999 * 117.50095 * 359.97438 * 27 26 9 44 44 H 1.09003 * 117.50147 * 145.01853 * 27 26 9 45 45 H 1.09005 * 117.49991 * 214.97788 * 28 26 9 46 46 H 1.08995 * 117.50280 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0405 -1.2311 0.3219 9 7 1.3883 -2.3516 -0.4098 10 6 0.4539 -2.3171 -1.5376 11 7 1.1841 -2.5591 -2.7844 12 6 1.7254 -1.5721 -3.5122 13 8 1.6808 -0.3919 -3.2391 14 6 2.3968 -2.1665 -4.7343 15 6 2.1488 -3.6704 -4.5719 16 6 3.4713 -4.4436 -4.5006 17 6 3.6599 -4.9005 -5.9650 18 6 2.2634 -4.9493 -6.5495 19 6 1.7921 -5.5669 -7.6953 20 6 0.4578 -5.4735 -8.0386 21 6 -0.4119 -4.7597 -7.2351 22 6 0.0551 -4.1427 -6.0917 23 6 1.3928 -4.2348 -5.7436 24 6 1.3705 -3.7880 -3.2912 25 8 0.9718 -4.8221 -2.7998 26 6 1.6576 -3.6156 0.2800 27 6 2.3662 -3.5444 1.6342 28 6 3.1176 -4.0564 0.4027 29 1 -0.4849 0.8368 0.0738 30 1 -0.0264 -1.3397 -1.5816 31 1 -0.3042 -3.0890 -1.4049 32 1 3.4650 -1.9499 -4.7302 33 1 1.9313 -1.7960 -5.6476 34 1 4.2867 -3.7904 -4.1896 35 1 3.3840 -5.3017 -3.8342 36 1 4.1177 -5.8892 -5.9966 37 1 4.2731 -4.1831 -6.5105 38 1 2.4709 -6.1247 -8.3233 39 1 0.0943 -5.9572 -8.9332 40 1 -1.4558 -4.6848 -7.5017 41 1 -0.6258 -3.5852 -5.4657 42 1 0.9065 -4.3940 0.1455 43 1 2.6325 -2.5571 2.0116 44 1 2.0816 -4.2761 2.3903 45 1 3.3269 -5.1248 0.3492 46 1 3.8777 -3.4062 -0.0302 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781142365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:13 Heat of formation + Delta-G solvation = 4.869348 kcal Electronic energy + Delta-G solvation = -30913.688466 eV Core-core repulsion = 26962.413183 eV Total energy + Delta-G solvation = -3951.275283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.18934 -40.66810 -39.37658 -38.76133 -37.14375 -36.40805 -35.17934 -33.31781 -32.13103 -30.89915 -29.80796 -27.56491 -27.37952 -25.52663 -24.03965 -23.66927 -23.04852 -22.09341 -21.93032 -21.50783 -20.31817 -18.85701 -17.93568 -17.73572 -17.31599 -17.24286 -16.62811 -16.36145 -16.27900 -15.99372 -15.76053 -15.63899 -15.14707 -15.03085 -14.77160 -14.62758 -14.28531 -13.91899 -13.83657 -13.71996 -13.23067 -13.15331 -12.98310 -12.80328 -12.78148 -12.58781 -12.51829 -12.26814 -12.19146 -12.01907 -11.90915 -11.69629 -11.65340 -11.41669 -11.18785 -10.83888 -10.63489 -10.49342 -9.75522 -9.46725 -8.67799 -8.04419 -5.63252 0.34636 0.47323 0.64002 1.34783 1.46228 1.48474 1.74503 1.94719 2.41386 2.76833 3.07277 3.12288 3.21339 3.32658 3.38804 3.46268 3.52218 3.65651 4.04627 4.12403 4.13778 4.18534 4.25348 4.33316 4.40231 4.43144 4.45317 4.53787 4.64520 4.67649 4.75378 4.78901 4.84679 4.89456 4.94911 4.95814 5.12939 5.17784 5.19563 5.23740 5.25109 5.46412 5.53463 5.59280 5.60980 5.67241 6.08120 6.09682 6.34152 6.52863 6.96191 6.98346 7.62277 8.14751 8.99187 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015164 B = 0.004146 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.069541 B = 6752.483559 C = 7389.490280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.002 3.998 3 Si 0.950 3.050 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.274 4.274 8 H 0.053 0.947 9 N -0.547 5.547 10 C 0.344 3.656 11 N -0.581 5.581 12 C 0.514 3.486 13 O -0.511 6.511 14 C -0.130 4.130 15 C -0.052 4.052 16 C -0.100 4.100 17 C -0.070 4.070 18 C -0.087 4.087 19 C -0.110 4.110 20 C -0.111 4.111 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.098 4.098 24 C 0.538 3.462 25 O -0.514 6.514 26 C 0.095 3.905 27 C -0.181 4.181 28 C -0.197 4.197 29 H 0.257 0.743 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.154 0.846 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.059 -11.942 -17.609 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.215 1.215 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.403 4.403 8 H 0.071 0.929 9 N -0.265 5.265 10 C 0.137 3.863 11 N -0.327 5.327 12 C 0.303 3.697 13 O -0.384 6.384 14 C -0.169 4.169 15 C -0.055 4.055 16 C -0.138 4.138 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.127 4.127 20 C -0.128 4.128 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.099 4.099 24 C 0.327 3.673 25 O -0.388 6.388 26 C -0.013 4.013 27 C -0.219 4.219 28 C -0.237 4.237 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.129 0.871 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.158 0.842 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.096 0.904 44 H 0.123 0.877 45 H 0.120 0.880 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.631 -11.670 -17.150 21.495 hybrid contribution -0.331 1.309 0.840 1.591 sum 5.299 -10.360 -16.310 20.036 Atomic orbital electron populations 1.69886 1.06817 1.26792 1.51923 1.25651 0.95513 1.01042 0.97537 0.85565 0.78767 0.80405 0.77477 1.21508 1.21329 1.19266 1.18849 0.93740 0.85372 1.42331 0.92929 1.43809 1.49908 1.03665 1.29118 1.21207 0.87844 1.02056 0.75164 1.48719 1.49908 1.09269 1.24824 1.21581 0.77185 0.85395 0.85491 1.90755 1.57022 1.16922 1.73697 1.22666 1.05300 0.92080 0.96890 1.20350 0.97593 0.96769 0.90828 1.22320 0.92657 0.99768 0.99023 1.21143 0.92686 1.04166 0.92624 1.20929 0.96449 0.96277 0.95043 1.20954 0.96277 0.99544 0.95945 1.21456 0.93189 0.98096 1.00093 1.21243 1.01071 0.97970 0.94168 1.20722 0.94211 1.00702 0.98107 1.19763 0.94140 1.00572 0.95408 1.20897 0.77868 0.82444 0.86044 1.90637 1.50539 1.31539 1.66076 1.21385 0.93480 0.89623 0.96803 1.23061 1.05470 1.01868 0.91508 1.23221 0.97121 1.00261 1.03133 0.93351 0.88098 0.92528 0.83720 0.85062 0.87833 0.90964 0.88147 0.87146 0.83059 0.82804 0.84216 0.88397 0.88920 0.90365 0.87739 0.88044 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.55 11.44 21.65 0.25 -53.30 16 2 C 0.00 0.12 4.98 84.86 0.42 0.54 16 3 Si 0.95 46.96 29.60 68.60 2.03 49.00 16 4 H -0.29 -14.83 7.11 99.48 0.71 -14.13 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.27 -15.07 8.03 84.04 0.67 -14.39 16 8 H 0.05 2.95 7.23 -2.91 -0.02 2.93 16 9 N -0.55 -27.86 3.02 -689.68 -2.08 -29.95 16 10 C 0.34 17.14 5.76 170.96 0.98 18.13 16 11 N -0.58 -24.56 2.81 -767.82 -2.16 -26.72 16 12 C 0.51 20.75 8.10 88.05 0.71 21.46 16 13 O -0.51 -25.20 17.49 -2.85 -0.05 -25.25 16 14 C -0.13 -3.48 6.33 30.23 0.19 -3.29 16 15 C -0.05 -1.42 0.82 -53.66 -0.04 -1.46 16 16 C -0.10 -2.11 6.12 31.24 0.19 -1.92 16 17 C -0.07 -1.02 6.78 30.62 0.21 -0.81 16 18 C -0.09 -1.67 6.15 -19.51 -0.12 -1.79 16 19 C -0.11 -1.70 10.03 22.28 0.22 -1.47 16 20 C -0.11 -1.73 10.05 22.24 0.22 -1.50 16 21 C -0.13 -2.51 10.04 22.23 0.22 -2.29 16 22 C -0.12 -3.07 9.81 22.30 0.22 -2.85 16 23 C -0.10 -2.47 4.83 -19.82 -0.10 -2.57 16 24 C 0.54 20.11 6.58 87.63 0.58 20.68 16 25 O -0.51 -21.68 17.45 -2.86 -0.05 -21.73 16 26 C 0.09 4.23 6.61 44.99 0.30 4.53 16 27 C -0.18 -7.24 9.81 30.62 0.30 -6.94 16 28 C -0.20 -7.60 10.09 30.62 0.31 -7.29 16 29 H 0.26 14.70 8.32 -92.71 -0.77 13.93 16 30 H 0.10 5.73 5.22 -2.39 -0.01 5.72 16 31 H 0.06 2.79 7.74 -2.39 -0.02 2.78 16 32 H 0.15 3.04 7.35 -2.39 -0.02 3.03 16 33 H 0.13 3.03 7.76 -2.39 -0.02 3.01 16 34 H 0.10 1.85 7.46 -2.38 -0.02 1.83 16 35 H 0.07 1.76 7.92 -2.39 -0.02 1.74 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 39 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.10 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.09 4.09 8.10 -2.38 -0.02 4.07 16 43 H 0.08 3.51 6.97 -2.39 -0.02 3.49 16 44 H 0.10 3.56 8.14 -2.39 -0.02 3.54 16 45 H 0.10 3.35 8.14 -2.38 -0.02 3.34 16 46 H 0.07 2.88 7.99 -2.39 -0.02 2.86 16 Total: -1.00 -72.62 380.90 4.44 -68.18 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 1.00 Total: 23.00 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.50 Total: 16.77 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -3.99 Total: -109.97 kcal Atomic # 8 Polarization: -46.88 SS G_CDS: -0.10 Total: -46.98 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 49.00 kcal Total: -72.62 4.44 -68.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781142365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.053 kcal (2) G-P(sol) polarization free energy of solvation -72.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds