Wall clock time and date at job start Sat Apr 11 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46868 * 2 1 4 4 C 1.46495 * 120.00005 * 270.00127 * 3 2 1 5 5 C 1.50700 * 109.47204 * 270.00440 * 4 3 2 6 6 H 1.08006 * 119.99893 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99909 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46883 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46977 * 120.00068 * 9 7 5 12 12 H 1.48493 * 109.47051 * 239.99966 * 9 7 5 13 13 C 1.34775 * 119.99818 * 90.00219 * 3 2 1 14 14 O 1.21279 * 119.99757 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99993 * 359.97438 * 13 3 2 16 16 O 1.45207 * 109.46942 * 180.02562 * 15 13 3 17 17 C 1.34221 * 116.99792 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00304 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47360 * 180.02562 * 19 17 16 21 21 N 1.40167 * 126.35278 * 270.00206 * 20 19 17 22 22 C 1.29399 * 108.14354 * 179.97438 * 21 20 19 23 23 C 1.50707 * 125.58262 * 179.97438 * 22 21 20 24 24 N 1.37348 * 108.82747 * 359.73668 * 22 21 20 25 25 C 1.46510 * 125.83294 * 180.30548 * 24 22 21 26 26 C 1.34820 * 108.33907 * 0.43203 * 24 22 21 27 27 O 1.21813 * 126.30395 * 179.84033 * 26 24 22 28 28 H 1.09005 * 109.47289 * 299.99622 * 1 2 3 29 29 H 1.08995 * 109.47214 * 59.99871 * 1 2 3 30 30 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46865 * 240.00393 * 2 1 3 32 32 H 1.08995 * 109.47214 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.47239 * 29.99953 * 4 3 2 34 34 H 1.08995 * 109.47767 * 150.00185 * 4 3 2 35 35 H 0.96997 * 119.99678 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.47170 * 60.00448 * 15 13 3 37 37 H 1.08997 * 109.47116 * 299.99793 * 15 13 3 38 38 H 1.08995 * 109.47328 * 60.00092 * 19 17 16 39 39 H 1.09003 * 109.47320 * 300.00141 * 19 17 16 40 40 H 1.09001 * 109.47199 * 0.02562 * 23 22 21 41 41 H 1.09005 * 109.46341 * 120.02204 * 23 22 21 42 42 H 1.08992 * 109.46964 * 240.02483 * 23 22 21 43 43 H 1.08993 * 109.46966 * 180.17531 * 25 24 22 44 44 H 1.09003 * 109.46486 * 300.17557 * 25 24 22 45 45 H 1.08996 * 109.47262 * 60.17080 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9137 2.0976 -3.4165 10 1 6.6013 1.2423 -2.4160 11 1 5.9215 1.4191 -4.7374 12 1 6.6209 3.3988 -3.5242 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3053 2.1961 3.5760 17 6 2.1334 1.7127 4.8162 18 8 1.7341 0.5834 4.9746 19 6 2.4383 2.5786 6.0114 20 7 2.1720 1.8265 7.2400 21 7 0.9564 1.7757 7.9362 22 6 1.1142 1.0096 8.9670 23 6 0.0537 0.6819 9.9865 24 7 2.4048 0.5399 8.9768 25 6 2.9813 -0.3629 9.9764 26 6 3.0513 1.0536 7.9112 27 8 4.2137 0.8529 7.6072 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6755 3.5177 -4.4431 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0126 2.5298 38 1 1.8087 3.4680 5.9858 39 1 3.4870 2.8750 5.9873 40 1 -0.8734 1.1908 9.7228 41 1 -0.1146 -0.3949 10.0023 42 1 0.3823 1.0129 10.9717 43 1 4.0242 -0.5606 9.7288 44 1 2.9232 0.1008 10.9611 45 1 2.4254 -1.3004 9.9829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848845640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:49 Heat of formation + Delta-G solvation = -63.084881 kcal Electronic energy + Delta-G solvation = -29429.217390 eV Core-core repulsion = 25064.146127 eV Total energy + Delta-G solvation = -4365.071262 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = -0.29 seconds Orbital eigenvalues (eV) -42.80665 -40.57330 -38.96757 -37.67222 -36.63390 -35.65866 -35.30326 -32.85186 -32.72424 -31.07384 -30.18056 -29.19409 -27.80887 -27.12580 -26.18794 -23.10825 -22.87042 -22.24837 -21.50068 -20.97263 -18.75115 -18.21241 -17.78941 -17.11308 -16.84801 -16.65666 -16.40353 -16.05358 -15.87127 -15.85345 -15.21784 -14.67471 -14.42619 -14.30343 -14.09336 -13.85224 -13.54118 -13.47413 -13.21750 -13.11493 -13.00268 -12.62179 -12.52093 -12.27441 -12.18609 -12.08494 -12.06332 -11.63775 -11.24221 -11.00536 -10.94309 -10.87161 -10.63216 -10.60329 -10.53924 -10.32440 -10.14558 -9.64211 -9.02240 -8.85872 -8.44850 -7.75866 -6.05779 -4.10458 1.22655 1.53436 2.02790 2.20380 2.50876 2.74340 3.24087 3.30301 3.38235 3.43018 3.83171 3.93288 4.17443 4.43703 4.51729 4.61086 4.66976 4.69484 4.85478 4.86781 4.87358 5.04599 5.12466 5.16711 5.20208 5.25483 5.29036 5.36274 5.46492 5.58004 5.67728 5.72535 5.98793 6.14402 6.18550 6.26566 6.44125 6.98906 7.26443 7.39258 7.46239 7.57055 7.71322 7.90521 8.20381 8.28740 8.84095 8.99092 9.54674 11.02416 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.002173 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.599471 B =12880.516932 C =13509.073900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.592 5.592 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 C 0.508 3.492 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.325 6.325 17 C 0.445 3.555 18 O -0.500 6.500 19 C 0.174 3.826 20 N -0.443 5.443 21 N -0.272 5.272 22 C 0.279 3.721 23 C -0.075 4.075 24 N -0.558 5.558 25 C 0.096 3.904 26 C 0.655 3.345 27 O -0.547 6.547 28 H 0.049 0.951 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 -7.564 28.944 31.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.023 4.023 3 N -0.325 5.325 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.292 3.708 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.239 6.239 17 C 0.285 3.715 18 O -0.387 6.387 19 C 0.051 3.949 20 N -0.263 5.263 21 N -0.095 5.095 22 C 0.001 3.999 23 C -0.135 4.135 24 N -0.287 5.287 25 C -0.046 4.046 26 C 0.355 3.645 27 O -0.419 6.419 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.507 -6.714 27.946 29.973 hybrid contribution 1.383 -0.943 -0.206 1.687 sum -7.124 -7.657 27.740 29.646 Atomic orbital electron populations 1.22232 0.96509 1.01688 1.02419 1.21512 0.93767 0.83958 1.03038 1.48208 1.63803 1.13395 1.07120 1.19342 0.96513 0.93723 0.77522 1.21466 0.96832 1.31994 1.06324 0.92337 1.24938 0.97946 0.94870 0.96365 1.69940 1.35616 1.33389 1.14361 0.86426 0.84529 0.78098 0.78283 1.19782 1.20961 1.20826 1.19670 0.79756 0.87147 0.84233 1.90717 1.44456 1.17470 1.86713 1.23003 1.02744 0.92642 0.84221 1.86532 1.78446 1.44951 1.13939 1.24020 0.74909 0.87399 0.85182 1.90681 1.41727 1.19710 1.86580 1.20723 1.06409 0.92102 0.75675 1.48254 1.08365 1.46310 1.23377 1.77037 1.04949 1.21885 1.05620 1.24222 0.86250 0.93228 0.96219 1.20444 0.94677 1.03833 0.94499 1.45790 1.11334 1.45336 1.26255 1.21848 1.00959 0.92162 0.89618 1.16644 0.85506 0.81100 0.81286 1.91115 1.13262 1.65675 1.71880 0.93151 0.91739 0.91911 0.89370 0.91810 0.94598 0.93657 0.92727 0.88635 0.88674 0.83943 0.84000 0.88068 0.88945 0.88966 0.88607 0.90231 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.64 5.93 -4.04 -0.02 1.61 16 3 N -0.59 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.45 5.16 -5.20 -0.03 6.42 16 5 C -0.53 -15.00 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 13 C 0.51 10.93 7.75 -10.99 -0.09 10.85 16 14 O -0.52 -13.44 16.08 -14.10 -0.23 -13.67 16 15 C 0.05 0.87 4.50 36.00 0.16 1.03 16 16 O -0.32 -5.51 9.75 -45.88 -0.45 -5.95 16 17 C 0.44 6.72 8.03 36.01 0.29 7.01 16 18 O -0.50 -8.69 16.18 -18.75 -0.30 -8.99 16 19 C 0.17 2.01 6.98 -5.19 -0.04 1.97 16 20 N -0.44 -5.66 3.11 -66.31 -0.21 -5.87 16 21 N -0.27 -3.03 12.53 32.97 0.41 -2.61 16 22 C 0.28 2.25 7.98 -154.17 -1.23 1.02 16 23 C -0.08 -0.19 10.10 36.01 0.36 0.17 16 24 N -0.56 -5.20 3.14 -125.40 -0.39 -5.60 16 25 C 0.10 0.47 10.86 59.85 0.65 1.12 16 26 C 0.65 8.92 8.61 -86.73 -0.75 8.17 16 27 O -0.55 -9.15 17.48 5.09 0.09 -9.06 16 28 H 0.05 0.66 7.22 -51.93 -0.37 0.28 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.46 8.07 -51.93 -0.42 1.04 16 32 H 0.06 0.89 6.44 -51.93 -0.33 0.55 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.10 1.51 7.39 -51.93 -0.38 1.12 16 37 H 0.10 1.41 7.18 -51.93 -0.37 1.03 16 38 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.14 1.43 8.11 -51.93 -0.42 1.01 16 40 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 42 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 43 H 0.10 0.59 7.73 -51.93 -0.40 0.19 16 44 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -40.82 394.74 -7.01 -47.82 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -6.44 Total: -3.97 kcal Atomic # 6 Polarization: 24.49 SS G_CDS: -0.72 Total: 23.77 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: 0.12 Total: -52.95 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.89 Total: -37.67 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -40.82 -7.01 -47.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848845640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.260 kcal (2) G-P(sol) polarization free energy of solvation -40.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.29 seconds