Wall clock time and date at job start Sat Apr 11 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46868 * 2 1 4 4 C 1.46495 * 120.00005 * 270.00127 * 3 2 1 5 5 C 1.50700 * 109.47204 * 270.00440 * 4 3 2 6 6 H 1.08006 * 119.99893 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99909 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00011 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46883 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46977 * 120.00068 * 9 7 5 12 12 H 1.48493 * 109.47051 * 239.99966 * 9 7 5 13 13 C 1.34775 * 119.99818 * 90.00219 * 3 2 1 14 14 O 1.21279 * 119.99757 * 179.97438 * 13 3 2 15 15 C 1.50698 * 119.99993 * 359.97438 * 13 3 2 16 16 O 1.45207 * 109.46942 * 180.02562 * 15 13 3 17 17 C 1.34221 * 116.99792 * 179.97438 * 16 15 13 18 18 O 1.20824 * 120.00304 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99857 * 180.02562 * 17 16 15 20 20 N 1.46500 * 109.47360 * 180.02562 * 19 17 16 21 21 N 1.40167 * 126.35278 * 270.00206 * 20 19 17 22 22 C 1.29399 * 108.14354 * 179.97438 * 21 20 19 23 23 C 1.50707 * 125.58262 * 179.97438 * 22 21 20 24 24 N 1.37348 * 108.82747 * 359.73668 * 22 21 20 25 25 C 1.46510 * 125.83294 * 180.30548 * 24 22 21 26 26 C 1.34820 * 108.33907 * 0.43203 * 24 22 21 27 27 O 1.21813 * 126.30395 * 179.84033 * 26 24 22 28 28 H 1.09005 * 109.47289 * 299.99622 * 1 2 3 29 29 H 1.08995 * 109.47214 * 59.99871 * 1 2 3 30 30 H 1.09004 * 109.47040 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46865 * 240.00393 * 2 1 3 32 32 H 1.08995 * 109.47214 * 120.00129 * 2 1 3 33 33 H 1.09005 * 109.47239 * 29.99953 * 4 3 2 34 34 H 1.08995 * 109.47767 * 150.00185 * 4 3 2 35 35 H 0.96997 * 119.99678 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.47170 * 60.00448 * 15 13 3 37 37 H 1.08997 * 109.47116 * 299.99793 * 15 13 3 38 38 H 1.08995 * 109.47328 * 60.00092 * 19 17 16 39 39 H 1.09003 * 109.47320 * 300.00141 * 19 17 16 40 40 H 1.09001 * 109.47199 * 0.02562 * 23 22 21 41 41 H 1.09005 * 109.46341 * 120.02204 * 23 22 21 42 42 H 1.08992 * 109.46964 * 240.02483 * 23 22 21 43 43 H 1.08993 * 109.46966 * 180.17531 * 25 24 22 44 44 H 1.09003 * 109.46486 * 300.17557 * 25 24 22 45 45 H 1.08996 * 109.47262 * 60.17080 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9137 2.0976 -3.4165 10 1 6.6013 1.2423 -2.4160 11 1 5.9215 1.4191 -4.7374 12 1 6.6209 3.3988 -3.5242 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3053 2.1961 3.5760 17 6 2.1334 1.7127 4.8162 18 8 1.7341 0.5834 4.9746 19 6 2.4383 2.5786 6.0114 20 7 2.1720 1.8265 7.2400 21 7 0.9564 1.7757 7.9362 22 6 1.1142 1.0096 8.9670 23 6 0.0537 0.6819 9.9865 24 7 2.4048 0.5399 8.9768 25 6 2.9813 -0.3629 9.9764 26 6 3.0513 1.0536 7.9112 27 8 4.2137 0.8529 7.6072 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0284 34 1 2.0954 3.1411 -1.1385 35 1 3.6755 3.5177 -4.4431 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0126 2.5298 38 1 1.8087 3.4680 5.9858 39 1 3.4870 2.8750 5.9873 40 1 -0.8734 1.1908 9.7228 41 1 -0.1146 -0.3949 10.0023 42 1 0.3823 1.0129 10.9717 43 1 4.0242 -0.5606 9.7288 44 1 2.9232 0.1008 10.9611 45 1 2.4254 -1.3004 9.9829 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848845640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:47 Heat of formation + Delta-G solvation = -90.478404 kcal Electronic energy + Delta-G solvation = -29430.405262 eV Core-core repulsion = 25064.146127 eV Total energy + Delta-G solvation = -4366.259135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.59668 -41.86651 -40.61888 -38.65113 -37.89597 -37.03153 -36.47796 -34.96129 -33.43581 -31.91049 -31.63218 -30.58456 -28.64249 -28.33613 -27.37041 -24.94292 -24.23811 -23.31444 -22.28073 -21.96002 -20.35446 -19.38632 -18.78746 -18.60727 -18.08141 -18.04579 -17.85470 -17.36280 -17.06464 -16.81292 -16.66700 -16.29019 -15.90191 -15.08368 -14.94672 -14.82312 -14.74304 -14.58853 -14.20312 -14.13496 -13.85190 -13.68202 -13.60340 -13.51312 -13.31297 -13.21730 -13.09136 -12.96027 -12.92185 -12.71651 -12.54128 -12.27785 -12.12153 -12.06033 -11.86336 -11.71897 -11.54347 -11.11809 -10.77881 -10.66649 -9.72929 -9.58061 -8.25251 -6.39418 0.37895 0.84501 0.87146 1.21329 1.35120 1.37798 1.48454 1.52368 1.57185 2.00422 2.28901 2.41297 3.04768 3.26551 3.35247 3.41768 3.72464 3.84155 3.88421 3.97294 4.05407 4.10152 4.15347 4.34191 4.47045 4.54920 4.70448 4.73983 4.77369 4.82531 4.83894 4.89334 4.91265 4.99754 5.05693 5.07756 5.18291 5.32883 5.51668 5.58824 5.77023 6.02147 6.34837 6.50758 6.57354 6.69490 6.79383 7.17223 7.33817 8.82408 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019803 B = 0.002173 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.599471 B =12880.516932 C =13509.073900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.595 5.595 4 C 0.263 3.737 5 C -0.544 4.544 6 H 0.052 0.948 7 C 0.009 3.991 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.269 1.269 11 H -0.268 1.268 12 H -0.281 1.281 13 C 0.501 3.499 14 O -0.574 6.574 15 C 0.063 3.937 16 O -0.340 6.340 17 C 0.448 3.552 18 O -0.524 6.524 19 C 0.173 3.827 20 N -0.451 5.451 21 N -0.308 5.308 22 C 0.294 3.706 23 C -0.074 4.074 24 N -0.554 5.554 25 C 0.086 3.914 26 C 0.636 3.364 27 O -0.593 6.593 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.031 0.969 34 H 0.002 0.998 35 H 0.268 0.732 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.122 0.878 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.659 -9.493 31.428 34.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 N -0.327 5.327 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.565 5.565 9 Si 0.792 3.208 10 H -0.194 1.194 11 H -0.193 1.193 12 H -0.207 1.207 13 C 0.288 3.712 14 O -0.454 6.454 15 C -0.014 4.014 16 O -0.254 6.254 17 C 0.290 3.710 18 O -0.412 6.412 19 C 0.050 3.950 20 N -0.270 5.270 21 N -0.131 5.131 22 C 0.017 3.983 23 C -0.132 4.132 24 N -0.282 5.282 25 C -0.054 4.054 26 C 0.335 3.665 27 O -0.469 6.469 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.096 0.904 44 H 0.133 0.867 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -9.387 -8.702 30.478 33.056 hybrid contribution 1.555 -0.388 -0.870 1.823 sum -7.832 -9.090 29.608 31.947 Atomic orbital electron populations 1.22170 0.94150 1.03795 1.01928 1.21861 0.95690 0.81020 1.04273 1.48206 1.63562 1.15217 1.05704 1.18812 0.95593 0.91753 0.79642 1.21717 0.97811 1.32158 1.06612 0.92944 1.25838 1.02369 0.94446 0.96406 1.70046 1.37625 1.34038 1.14836 0.85368 0.79025 0.78027 0.78385 1.19382 1.19266 1.20691 1.20441 0.78443 0.86660 0.85697 1.90680 1.46978 1.20010 1.87690 1.22838 1.04638 0.91946 0.81942 1.86541 1.78812 1.45406 1.14670 1.24688 0.73812 0.87462 0.84995 1.90654 1.43054 1.20832 1.86674 1.20973 1.07701 0.92163 0.74182 1.48410 1.09005 1.46163 1.23417 1.77073 1.04299 1.24481 1.07276 1.25328 0.86356 0.90872 0.95782 1.20794 0.93020 1.05353 0.94069 1.46070 1.11616 1.44956 1.25580 1.22233 1.00181 0.93001 0.89943 1.17025 0.85357 0.81605 0.82494 1.91058 1.15145 1.67366 1.73349 0.92466 0.93438 0.88426 0.89885 0.88821 0.95071 0.98020 0.92306 0.87028 0.85947 0.80955 0.83033 0.87493 0.86736 0.85957 0.90419 0.86732 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 10.24 71.98 0.74 -3.36 16 2 C 0.09 2.92 5.93 86.38 0.51 3.43 16 3 N -0.59 -25.76 2.46 -826.17 -2.03 -27.79 16 4 C 0.26 14.28 5.16 85.63 0.44 14.72 16 5 C -0.54 -31.78 9.39 25.60 0.24 -31.54 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.50 5.46 84.65 0.46 0.97 16 8 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 9 Si 0.97 45.66 29.54 68.60 2.03 47.69 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 13 C 0.50 21.99 7.75 87.66 0.68 22.67 16 14 O -0.57 -31.12 16.08 15.77 0.25 -30.87 16 15 C 0.06 2.09 4.50 71.24 0.32 2.41 16 16 O -0.34 -11.49 9.75 -44.97 -0.44 -11.93 16 17 C 0.45 13.39 8.03 71.24 0.57 13.96 16 18 O -0.52 -17.83 16.18 21.97 0.36 -17.48 16 19 C 0.17 3.95 6.98 85.63 0.60 4.55 16 20 N -0.45 -11.33 3.11 -481.77 -1.50 -12.83 16 21 N -0.31 -6.44 12.53 -49.60 -0.62 -7.06 16 22 C 0.29 4.04 7.98 137.70 1.10 5.14 16 23 C -0.07 -0.08 10.10 71.24 0.72 0.64 16 24 N -0.55 -9.44 3.14 -668.80 -2.10 -11.54 16 25 C 0.09 0.64 10.86 127.77 1.39 2.03 16 26 C 0.64 17.26 8.61 178.99 1.54 18.80 16 27 O -0.59 -20.44 17.48 -4.71 -0.08 -20.52 16 28 H 0.06 1.37 7.22 -2.38 -0.02 1.35 16 29 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 32 H 0.09 2.38 6.44 -2.39 -0.02 2.36 16 33 H 0.03 1.70 8.07 -2.38 -0.02 1.68 16 34 H 0.00 0.10 7.42 -2.39 -0.02 0.09 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.11 3.35 7.39 -2.39 -0.02 3.33 16 37 H 0.12 3.38 7.18 -2.39 -0.02 3.36 16 38 H 0.17 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.15 3.11 8.11 -2.39 -0.02 3.09 16 40 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.11 -0.28 8.14 -2.38 -0.02 -0.29 16 42 H 0.12 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.08 0.90 7.73 -2.39 -0.02 0.88 16 44 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -94.07 394.74 6.47 -87.60 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.01 Total: 6.29 kcal Atomic # 6 Polarization: 45.09 SS G_CDS: 9.31 Total: 54.40 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -5.97 Total: -115.17 kcal Atomic # 8 Polarization: -80.89 SS G_CDS: 0.09 Total: -80.80 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -94.07 6.47 -87.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848845640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.880 kcal (2) G-P(sol) polarization free energy of solvation -94.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds