Wall clock time and date at job start Sat Apr 11 2020 06:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.50696 * 109.52460 * 334.49807 * 3 2 1 5 5 O 1.21288 * 119.99819 * 240.00183 * 4 3 2 6 6 N 1.34774 * 120.00032 * 59.99726 * 4 3 2 7 7 C 1.47135 * 121.26655 * 179.97438 * 6 4 3 8 8 C 1.52798 * 107.81050 * 116.01208 * 7 6 4 9 9 C 1.50568 * 110.86598 * 47.44141 * 8 7 6 10 10 C 1.41407 * 117.63180 * 160.33656 * 9 8 7 11 11 C 1.41399 * 119.96863 * 358.47380 * 10 9 8 12 12 H 1.08001 * 119.99836 * 25.73699 * 11 10 9 13 13 C 1.39940 * 120.00464 * 205.73081 * 11 10 9 14 14 N 1.30822 * 119.99754 * 15.36806 * 13 11 10 15 15 Si 1.86800 * 120.00261 * 195.36827 * 13 11 10 16 16 H 1.48499 * 109.46967 * 90.00369 * 15 13 11 17 17 H 1.48497 * 109.46928 * 210.00100 * 15 13 11 18 18 H 1.48493 * 109.47303 * 329.99936 * 15 13 11 19 19 C 1.40407 * 120.06655 * 178.45233 * 10 9 8 20 20 C 1.37644 * 119.53787 * 0.37804 * 19 10 9 21 21 C 1.38335 * 119.98925 * 0.16490 * 20 19 10 22 22 C 1.37050 * 122.99225 * 339.68116 * 9 8 7 23 23 C 1.46659 * 121.33944 * 0.02562 * 6 4 3 24 24 C 1.53181 * 109.51847 * 214.37316 * 3 2 1 25 25 C 1.53191 * 109.03337 * 296.94845 * 24 3 2 26 26 C 1.53096 * 109.21399 * 303.11829 * 25 24 3 27 27 O 1.42901 * 109.41556 * 57.56724 * 26 25 24 28 28 C 1.42898 * 114.10471 * 298.84543 * 27 26 25 29 29 H 1.09005 * 109.81091 * 356.42981 * 7 6 4 30 30 H 1.09005 * 109.84390 * 235.61018 * 7 6 4 31 31 H 1.08996 * 109.19788 * 287.07713 * 8 7 6 32 32 H 1.09007 * 109.19407 * 167.79687 * 8 7 6 33 33 H 0.97005 * 120.00301 * 179.97438 * 14 13 11 34 34 H 1.07996 * 120.23110 * 180.35655 * 19 10 9 35 35 H 1.07995 * 120.00961 * 180.17805 * 20 19 10 36 36 H 1.07997 * 119.47511 * 179.86688 * 21 20 19 37 37 H 1.08999 * 109.43136 * 104.18769 * 23 6 4 38 38 H 1.09010 * 109.42792 * 344.29564 * 23 6 4 39 39 H 1.09000 * 109.54843 * 56.87804 * 24 3 2 40 40 H 1.09000 * 109.54326 * 177.14859 * 24 3 2 41 41 H 1.08996 * 109.52440 * 183.18282 * 25 24 3 42 42 H 1.08997 * 109.52077 * 63.04862 * 25 24 3 43 43 H 1.09008 * 109.47976 * 297.59057 * 26 25 24 44 44 H 1.08996 * 109.49322 * 177.56196 * 26 25 24 45 45 H 1.08995 * 109.47810 * 301.17774 * 28 27 26 46 46 H 1.08999 * 109.48156 * 181.13534 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1123 -1.2810 0.6115 5 8 3.8099 -1.2465 1.6031 6 7 2.7879 -2.4657 0.0566 7 6 3.2653 -3.7338 0.6301 8 6 2.0448 -4.5196 1.1074 9 6 0.9732 -4.5404 0.0499 10 6 -0.0170 -5.5459 0.1393 11 6 0.0416 -6.5046 1.1770 12 1 0.5406 -6.2664 2.1047 13 6 -0.5471 -7.7621 1.0020 14 7 -0.8819 -8.1665 -0.1963 15 14 -0.8549 -8.8631 2.4793 16 1 -2.2045 -8.5837 3.0322 17 1 -0.7760 -10.2858 2.0612 18 1 0.1711 -8.5950 3.5188 19 6 -1.0587 -5.5930 -0.8010 20 6 -1.1031 -4.6597 -1.8118 21 6 -0.1237 -3.6865 -1.8979 22 6 0.9149 -3.6285 -0.9715 23 6 1.9468 -2.5416 -1.1424 24 6 3.1193 1.1926 0.8151 25 6 2.6671 2.4908 0.1393 26 6 3.1763 2.5112 -1.3043 27 8 2.6885 1.3600 -1.9964 28 6 3.1196 0.1173 -1.4382 29 1 3.9270 -3.5323 1.4726 30 1 3.7986 -4.3058 -0.1292 31 1 1.6490 -4.0537 2.0098 32 1 2.3439 -5.5428 1.3348 33 1 -1.2896 -9.0383 -0.3177 34 1 -1.8195 -6.3562 -0.7318 35 1 -1.9024 -4.6871 -2.5375 36 1 -0.1654 -2.9598 -2.6956 37 1 2.5695 -2.7658 -2.0085 38 1 1.4449 -1.5859 -1.2943 39 1 2.7122 1.1452 1.8251 40 1 4.2081 1.1649 0.8578 41 1 3.0740 3.3445 0.6811 42 1 1.5783 2.5428 0.1422 43 1 4.2664 2.5011 -1.3055 44 1 2.8207 3.4129 -1.8028 45 1 4.2088 0.0759 -1.4410 46 1 2.7228 -0.7055 -2.0329 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869494303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:01 Heat of formation + Delta-G solvation = -43.044317 kcal Electronic energy + Delta-G solvation = -30341.623630 eV Core-core repulsion = 26388.270655 eV Total energy + Delta-G solvation = -3953.352975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 2.48 seconds Orbital eigenvalues (eV) -42.33633 -40.37427 -39.47083 -37.66073 -37.19615 -35.51883 -34.79384 -33.97372 -32.53236 -31.83494 -30.43123 -27.25436 -26.90336 -26.31773 -25.63673 -24.38189 -22.64784 -22.43809 -22.04593 -20.16130 -19.00771 -18.79461 -18.11155 -17.65762 -17.13333 -16.87434 -16.50755 -16.45023 -16.18904 -15.91754 -15.63976 -15.28192 -15.06574 -14.79572 -14.64842 -14.42703 -14.17718 -14.10332 -14.00758 -13.73923 -13.59071 -13.45857 -13.18753 -13.09780 -12.97094 -12.80582 -12.78697 -12.59945 -12.22049 -12.17218 -12.00029 -11.93570 -11.59651 -11.39294 -11.12993 -11.07896 -11.01645 -10.58712 -9.82898 -9.22374 -9.11459 -8.62904 -6.35086 0.93475 0.99983 1.05288 1.35729 1.47454 1.48102 1.49413 1.52371 1.86924 2.17756 2.56605 2.70423 2.81456 3.17917 3.43952 3.46898 3.62008 3.81022 3.97582 4.00996 4.12581 4.18220 4.28950 4.30262 4.41414 4.44995 4.47244 4.58066 4.60224 4.69256 4.73341 4.79738 4.83926 4.97066 5.01112 5.06515 5.08716 5.18917 5.22158 5.27523 5.31557 5.49674 5.72652 5.91656 6.09394 6.12664 6.13841 6.19747 6.28972 6.37594 6.68849 6.81515 6.93587 7.03126 8.32570 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.003278 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.308827 B = 8538.655566 C = 9184.453925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.228 3.772 3 C -0.010 4.010 4 C 0.535 3.465 5 O -0.544 6.544 6 N -0.597 5.597 7 C 0.120 3.880 8 C -0.064 4.064 9 C -0.187 4.187 10 C 0.079 3.921 11 C -0.489 4.489 12 H 0.078 0.922 13 C 0.036 3.964 14 N -0.824 5.824 15 Si 0.975 3.025 16 H -0.269 1.269 17 H -0.267 1.267 18 H -0.256 1.256 19 C -0.193 4.193 20 C -0.112 4.112 21 C -0.232 4.232 22 C -0.082 4.082 23 C 0.150 3.850 24 C -0.095 4.095 25 C -0.156 4.156 26 C 0.048 3.952 27 O -0.386 6.386 28 C 0.068 3.932 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.286 0.714 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.049 0.951 43 H 0.085 0.915 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 16.013 -2.484 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.090 4.090 3 C -0.017 4.017 4 C 0.320 3.680 5 O -0.421 6.421 6 N -0.328 5.328 7 C -0.001 4.001 8 C -0.102 4.102 9 C -0.189 4.189 10 C 0.077 3.923 11 C -0.518 4.518 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.451 5.451 15 Si 0.797 3.203 16 H -0.194 1.194 17 H -0.192 1.192 18 H -0.180 1.180 19 C -0.213 4.213 20 C -0.130 4.130 21 C -0.251 4.251 22 C -0.082 4.082 23 C 0.028 3.972 24 C -0.133 4.133 25 C -0.194 4.194 26 C -0.028 4.028 27 O -0.304 6.304 28 C -0.010 4.010 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.104 0.896 44 H 0.131 0.869 45 H 0.130 0.870 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.953 15.842 -2.240 19.390 hybrid contribution -0.685 -1.215 0.840 1.628 sum 10.268 14.627 -1.400 17.926 Atomic orbital electron populations 1.81293 1.13532 1.08532 1.08516 1.28502 0.94440 0.92964 0.93122 1.19484 0.82256 0.96805 1.03155 1.19885 0.80494 0.84044 0.83535 1.90702 1.39469 1.86709 1.25240 1.48100 1.49325 1.06327 1.29036 1.21734 0.95662 0.82675 1.00054 1.20360 0.93801 1.00354 0.95677 1.19615 0.99097 1.00574 0.99586 1.17981 0.89993 0.91681 0.92620 1.19794 1.32870 0.97772 1.01387 0.90436 1.26685 0.92337 0.99698 0.99138 1.69878 1.31065 1.20045 1.24071 0.85294 0.79561 0.77087 0.78377 1.19365 1.19198 1.18011 1.21244 1.00211 1.00722 0.99111 1.20847 0.98573 0.95654 0.97936 1.20522 0.98746 1.02921 1.02927 1.19442 0.96536 0.96330 0.95940 1.20909 0.91069 0.97606 0.87635 1.21624 1.03759 0.89975 0.97987 1.22302 1.01244 0.98039 0.97765 1.22983 1.00146 0.88368 0.91293 1.88035 1.74759 1.13897 1.53725 1.23065 1.01813 0.88744 0.87417 0.88111 0.88782 0.94253 0.90582 0.90335 0.88411 0.87657 0.86800 0.86947 0.89310 0.90975 0.86590 0.86717 0.93205 0.89649 0.86893 0.87031 0.86928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.01 18.54 20.01 0.37 -15.64 16 2 C 0.23 6.80 9.77 89.44 0.87 7.67 16 3 C -0.01 -0.22 0.47 -54.64 -0.03 -0.24 16 4 C 0.53 14.75 6.48 87.66 0.57 15.32 16 5 O -0.54 -16.96 15.45 -3.05 -0.05 -17.01 16 6 N -0.60 -17.62 2.93 -824.23 -2.42 -20.04 16 7 C 0.12 3.70 6.44 86.19 0.56 4.25 16 8 C -0.06 -2.55 4.95 29.74 0.15 -2.41 16 9 C -0.19 -8.70 5.82 -19.40 -0.11 -8.81 16 10 C 0.08 4.24 5.58 -21.19 -0.12 4.12 16 11 C -0.49 -25.91 8.05 23.46 0.19 -25.72 16 12 H 0.08 3.97 6.82 -2.91 -0.02 3.95 16 13 C 0.04 1.82 5.17 85.26 0.44 2.26 16 14 N -0.82 -43.16 10.88 21.82 0.24 -42.92 16 15 Si 0.98 38.56 29.59 68.60 2.03 40.59 16 16 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 17 H -0.27 -10.03 7.11 99.48 0.71 -9.32 16 18 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 19 C -0.19 -10.36 8.66 22.66 0.20 -10.17 16 20 C -0.11 -5.30 10.03 22.15 0.22 -5.07 16 21 C -0.23 -9.90 9.63 22.55 0.22 -9.68 16 22 C -0.08 -3.37 5.82 -19.84 -0.12 -3.49 16 23 C 0.15 4.53 4.25 85.65 0.36 4.89 16 24 C -0.09 -1.63 4.10 30.72 0.13 -1.50 16 25 C -0.16 -2.05 5.87 30.69 0.18 -1.87 16 26 C 0.05 0.54 6.84 72.01 0.49 1.03 16 27 O -0.39 -6.91 10.44 -148.98 -1.56 -8.47 16 28 C 0.07 1.15 5.22 72.01 0.38 1.53 16 29 H 0.10 2.91 7.07 -2.38 -0.02 2.89 16 30 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 3.10 7.02 -2.38 -0.02 3.08 16 33 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 34 H 0.10 5.54 6.15 -2.91 -0.02 5.52 16 35 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.11 4.18 8.05 -2.91 -0.02 4.16 16 37 H 0.11 2.68 7.88 -2.39 -0.02 2.66 16 38 H 0.09 2.60 3.56 -2.38 -0.01 2.59 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.12 1.54 8.03 -2.39 -0.02 1.52 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 0.90 7.40 -2.39 -0.02 0.88 16 43 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.11 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.11 1.97 4.91 -2.39 -0.01 1.96 16 Total: -1.00 -68.18 362.51 4.22 -63.96 By element: Atomic # 1 Polarization: 26.40 SS G_CDS: 1.02 Total: 27.42 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 4.58 Total: -27.89 kcal Atomic # 7 Polarization: -76.79 SS G_CDS: -1.81 Total: -78.60 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -1.60 Total: -25.48 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Total: -68.18 4.22 -63.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869494303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.913 kcal (2) G-P(sol) polarization free energy of solvation -68.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.48 seconds