Wall clock time and date at job start Sat Apr 11 2020 06:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 120.00135 * 2 1 4 4 H 1.48506 * 109.47134 * 272.94309 * 3 2 1 5 5 H 1.48497 * 109.46932 * 32.94398 * 3 2 1 6 6 H 1.48499 * 109.47099 * 152.94363 * 3 2 1 7 7 C 1.38809 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00477 * 339.33969 * 7 2 1 9 9 N 1.36938 * 120.00095 * 159.34557 * 7 2 1 10 10 C 1.46925 * 120.63308 * 332.62860 * 9 7 2 11 11 C 1.53188 * 108.77795 * 233.58943 * 10 9 7 12 12 C 1.53040 * 109.31134 * 305.36291 * 11 10 9 13 13 O 1.45207 * 109.45864 * 181.38775 * 12 11 10 14 14 C 1.34227 * 116.99855 * 149.97515 * 13 12 11 15 15 O 1.20830 * 120.00385 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99822 * 180.02562 * 14 13 12 17 17 C 1.50704 * 109.46915 * 179.97438 * 16 14 13 18 18 C 1.39381 * 119.48714 * 269.72233 * 17 16 14 19 19 C 1.36168 * 121.08462 * 179.71105 * 18 17 16 20 20 C 1.40375 * 119.51389 * 0.55624 * 19 18 17 21 21 C 1.40440 * 122.07743 * 179.72685 * 20 19 18 22 22 N 1.31243 * 119.87923 * 180.02562 * 21 20 19 23 23 C 1.32613 * 122.77977 * 359.97438 * 22 21 20 24 24 C 1.36177 * 121.87163 * 359.97438 * 23 22 21 25 25 C 1.40690 * 118.66807 * 0.02562 * 24 23 22 26 26 C 1.36213 * 119.49381 * 89.99572 * 17 16 14 27 27 C 1.53038 * 109.52858 * 61.36930 * 12 11 10 28 28 C 1.46929 * 120.63026 * 152.60741 * 9 7 2 29 29 H 0.96998 * 119.99629 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.58901 * 113.79877 * 10 9 7 31 31 H 1.09006 * 109.69720 * 353.44302 * 10 9 7 32 32 H 1.08996 * 109.49938 * 185.40893 * 11 10 9 33 33 H 1.09000 * 109.52361 * 65.33071 * 11 10 9 34 34 H 1.09001 * 109.45952 * 301.35326 * 12 11 10 35 35 H 1.09002 * 109.46504 * 299.99185 * 16 14 13 36 36 H 1.08987 * 109.47508 * 59.99362 * 16 14 13 37 37 H 1.07996 * 119.45702 * 0.02562 * 18 17 16 38 38 H 1.08000 * 120.24507 * 180.30402 * 19 18 17 39 39 H 1.07997 * 120.05807 * 0.04936 * 21 20 19 40 40 H 1.07994 * 119.06380 * 180.02562 * 23 22 21 41 41 H 1.08000 * 120.66214 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.26145 * 0.02562 * 26 17 16 43 43 H 1.09004 * 109.49479 * 58.58165 * 27 12 11 44 44 H 1.09000 * 109.49684 * 178.67509 * 27 12 11 45 45 H 1.09002 * 109.58792 * 246.19735 * 28 9 7 46 46 H 1.09000 * 109.58755 * 6.48308 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4355 2.0824 -1.3983 5 1 1.4802 2.6338 0.7614 6 1 3.5775 1.4229 0.6368 7 6 2.0102 -1.2021 -0.0005 8 1 1.5224 -2.1076 0.3290 9 7 3.3136 -1.2401 -0.4189 10 6 3.8174 -0.2584 -1.3890 11 6 4.4622 -1.0077 -2.5592 12 6 5.5289 -1.9643 -2.0214 13 8 6.1651 -2.6523 -3.1306 14 6 7.4460 -3.0185 -2.9665 15 8 8.0170 -2.7719 -1.9306 16 6 8.1724 -3.7362 -4.0748 17 6 9.5849 -4.0318 -3.6407 18 6 10.5912 -3.1032 -3.9010 19 6 11.8773 -3.3343 -3.5180 20 6 12.1984 -4.5322 -2.8604 21 6 13.5075 -4.8283 -2.4469 22 7 13.7594 -5.9621 -1.8357 23 6 12.8215 -6.8643 -1.5811 24 6 11.5221 -6.6718 -1.9402 25 6 11.1739 -5.4790 -2.6001 26 6 9.8595 -5.2047 -3.0049 27 6 4.8749 -2.9899 -1.0927 28 6 4.2350 -2.2631 0.0943 29 1 -0.4849 0.8401 -0.0004 30 1 4.5598 0.3803 -0.9106 31 1 2.9923 0.3520 -1.7562 32 1 4.9247 -0.2920 -3.2389 33 1 3.6999 -1.5756 -3.0925 34 1 6.2780 -1.3984 -1.4675 35 1 7.6583 -4.6705 -4.3006 36 1 8.1902 -3.1071 -4.9646 37 1 10.3459 -2.1830 -4.4103 38 1 12.6455 -2.6031 -3.7223 39 1 14.3053 -4.1242 -2.6313 40 1 13.0958 -7.7774 -1.0738 41 1 10.7741 -7.4200 -1.7234 42 1 9.0713 -5.9177 -2.8137 43 1 4.1084 -3.5390 -1.6395 44 1 5.6313 -3.6852 -0.7285 45 1 5.0115 -1.7878 0.6937 46 1 3.6844 -2.9759 0.7082 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870245518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:21 Heat of formation + Delta-G solvation = -10.684731 kcal Electronic energy + Delta-G solvation = -28381.533405 eV Core-core repulsion = 24429.583647 eV Total energy + Delta-G solvation = -3951.949758 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -41.26069 -40.49249 -38.29236 -37.52274 -36.02144 -33.52085 -33.07525 -32.66013 -30.72125 -30.46302 -30.14762 -28.64791 -25.31042 -24.35142 -23.60046 -22.99850 -22.62877 -21.99090 -20.75121 -19.67404 -18.19101 -17.74349 -17.51138 -17.10743 -16.89959 -16.14457 -15.96529 -15.35068 -15.17628 -14.67405 -14.52376 -14.38905 -14.25246 -13.89931 -13.86182 -13.58092 -13.36109 -13.04360 -12.92185 -12.58537 -12.40174 -12.30115 -12.13356 -12.05451 -11.89704 -11.43512 -11.34902 -10.91322 -10.83253 -10.60277 -10.56179 -10.47253 -10.17576 -9.91816 -9.84307 -9.79607 -9.46621 -9.30971 -8.70087 -8.42844 -7.07800 -6.00047 -3.36959 -0.00046 0.50562 1.56845 2.18887 2.46316 2.94523 3.26825 3.45012 3.47530 3.74340 4.02641 4.09279 4.16961 4.43297 4.47510 4.48753 4.60133 4.68931 4.79225 4.86477 4.90735 4.99229 5.07706 5.10615 5.15135 5.24744 5.32832 5.33837 5.41338 5.49369 5.66883 5.69495 5.71160 5.92804 5.96004 6.04864 6.08080 6.08710 6.18641 6.27212 6.27949 6.44664 6.49285 6.52595 6.59184 6.63654 6.87864 7.62322 7.78742 7.88854 8.27267 8.86638 9.65465 10.01705 11.15658 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.025029 B = 0.002086 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.439749 B =13418.794029 C =13659.199946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.270 1.270 7 C -0.262 4.262 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.129 4.129 12 C 0.098 3.902 13 O -0.355 6.355 14 C 0.458 3.542 15 O -0.501 6.501 16 C -0.081 4.081 17 C -0.049 4.049 18 C -0.102 4.102 19 C -0.086 4.086 20 C -0.111 4.111 21 C 0.145 3.855 22 N -0.491 5.491 23 C 0.073 3.927 24 C -0.152 4.152 25 C -0.022 4.022 26 C -0.095 4.095 27 C -0.147 4.147 28 C 0.152 3.848 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.163 0.837 40 H 0.153 0.847 41 H 0.138 0.862 42 H 0.132 0.868 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.384 -10.549 -11.017 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.229 1.229 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.169 4.169 12 C 0.045 3.955 13 O -0.272 6.272 14 C 0.300 3.700 15 O -0.389 6.389 16 C -0.118 4.118 17 C -0.050 4.050 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.113 4.113 21 C -0.026 4.026 22 N -0.199 5.199 23 C -0.070 4.070 24 C -0.171 4.171 25 C -0.027 4.027 26 C -0.113 4.113 27 C -0.187 4.187 28 C 0.026 3.974 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.180 0.820 40 H 0.170 0.830 41 H 0.156 0.844 42 H 0.150 0.850 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 25.142 -10.701 -10.311 29.206 hybrid contribution -0.526 1.213 -0.132 1.329 sum 24.616 -9.488 -10.443 28.373 Atomic orbital electron populations 1.69833 1.05692 1.26628 1.52676 1.25290 0.95261 0.97587 0.99397 0.86988 0.80142 0.84716 0.77105 1.21505 1.22947 1.19509 1.18920 0.84800 0.94887 1.40398 0.89508 1.44427 1.08795 1.33223 1.46476 1.21372 0.97418 0.92044 0.88902 1.22240 0.97028 0.97678 0.99905 1.22881 0.93892 0.93360 0.85399 1.86547 1.25529 1.69158 1.45955 1.23345 0.81157 0.77155 0.88330 1.90694 1.67623 1.51537 1.29013 1.20401 0.91636 1.02859 0.96924 1.19147 0.93829 0.94334 0.97696 1.20802 0.92586 0.98845 0.99733 1.20934 0.96982 0.95654 0.97001 1.19057 0.95012 0.95934 1.01304 1.23214 0.94084 0.93478 0.91850 1.67423 1.37222 1.02653 1.12568 1.22178 0.89079 0.98039 0.97718 1.21936 0.98295 0.97246 0.99638 1.18120 0.93547 0.94115 0.96915 1.20824 0.95292 0.97454 0.97719 1.22456 0.99944 0.97964 0.98317 1.20880 0.92433 0.91485 0.92631 0.92678 0.95401 0.90014 0.91906 0.90385 0.90235 0.86500 0.86482 0.85365 0.84660 0.81980 0.82998 0.84374 0.84970 0.90835 0.92270 0.95594 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.42 13.97 55.49 0.78 -26.65 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.04 24.34 -169.99 -4.14 17.90 16 4 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.68 6.63 56.52 0.37 -6.31 16 7 C -0.26 -7.23 10.04 -15.06 -0.15 -7.38 16 8 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 9 N -0.61 -14.29 2.77 -172.32 -0.48 -14.77 16 10 C 0.13 2.76 4.20 -3.71 -0.02 2.75 16 11 C -0.13 -2.28 5.74 -26.61 -0.15 -2.44 16 12 C 0.10 1.65 2.42 -26.69 -0.06 1.59 16 13 O -0.36 -5.17 9.88 -39.25 -0.39 -5.56 16 14 C 0.46 5.95 7.92 36.01 0.29 6.24 16 15 O -0.50 -8.11 15.25 -18.75 -0.29 -8.40 16 16 C -0.08 -0.67 5.91 -29.03 -0.17 -0.84 16 17 C -0.05 -0.45 4.34 -104.92 -0.46 -0.90 16 18 C -0.10 -0.86 9.58 -39.90 -0.38 -1.24 16 19 C -0.09 -0.69 9.81 -39.52 -0.39 -1.07 16 20 C -0.11 -1.04 5.74 -106.86 -0.61 -1.66 16 21 C 0.15 1.27 11.05 -16.97 -0.19 1.09 16 22 N -0.49 -5.01 10.30 -13.15 -0.14 -5.14 16 23 C 0.07 0.64 11.07 -17.96 -0.20 0.44 16 24 C -0.15 -1.30 9.88 -39.40 -0.39 -1.69 16 25 C -0.02 -0.22 5.75 -106.82 -0.61 -0.83 16 26 C -0.09 -0.89 9.42 -39.56 -0.37 -1.26 16 27 C -0.15 -2.53 5.72 -26.61 -0.15 -2.68 16 28 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.03 0.60 7.07 -51.93 -0.37 0.23 16 31 H 0.08 1.90 4.50 -51.93 -0.23 1.67 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.41 7.15 -51.93 -0.37 1.04 16 35 H 0.12 0.72 8.07 -51.93 -0.42 0.31 16 36 H 0.12 0.70 8.07 -51.94 -0.42 0.28 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.07 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -34.15 375.42 -9.62 -43.77 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.49 Total: -0.51 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -4.14 Total: -6.31 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.16 Total: -46.56 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.67 Total: -13.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.15 -9.62 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870245518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.086 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds