Wall clock time and date at job start Sat Apr 11 2020 06:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99873 * 2 1 4 4 H 1.48499 * 109.47066 * 272.94206 * 3 2 1 5 5 H 1.48500 * 109.47264 * 32.94178 * 3 2 1 6 6 H 1.48504 * 109.47034 * 152.94198 * 3 2 1 7 7 C 1.38807 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99890 * 339.34880 * 7 2 1 9 9 N 1.36937 * 120.00168 * 159.34543 * 7 2 1 10 10 C 1.46923 * 120.63096 * 332.63422 * 9 7 2 11 11 C 1.53197 * 108.77724 * 233.58894 * 10 9 7 12 12 C 1.53044 * 109.30709 * 305.35897 * 11 10 9 13 13 O 1.45198 * 109.45896 * 181.38324 * 12 11 10 14 14 C 1.34223 * 117.00124 * 149.97343 * 13 12 11 15 15 O 1.20834 * 119.99931 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00266 * 180.02562 * 14 13 12 17 17 C 1.50697 * 109.47419 * 180.02562 * 16 14 13 18 18 C 1.39359 * 119.46665 * 89.99671 * 17 16 14 19 19 C 1.36146 * 120.86409 * 179.97438 * 18 17 16 20 20 C 1.40425 * 119.61636 * 0.02562 * 19 18 17 21 21 C 1.40767 * 121.37377 * 180.02562 * 20 19 18 22 22 C 1.36570 * 118.15277 * 179.97438 * 21 20 19 23 23 C 1.39341 * 119.93280 * 359.97438 * 22 21 20 24 24 N 1.31080 * 121.74815 * 0.02562 * 23 22 21 25 25 C 1.33686 * 121.32422 * 359.97438 * 24 23 22 26 26 C 1.36078 * 119.46447 * 270.00194 * 17 16 14 27 27 C 1.53040 * 109.52515 * 61.37601 * 12 11 10 28 28 C 1.46924 * 120.63373 * 152.60768 * 9 7 2 29 29 H 0.97005 * 119.99694 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.58755 * 113.79572 * 10 9 7 31 31 H 1.09008 * 109.70334 * 353.44118 * 10 9 7 32 32 H 1.08998 * 109.49760 * 185.41622 * 11 10 9 33 33 H 1.08989 * 109.52500 * 65.32873 * 11 10 9 34 34 H 1.08994 * 109.46323 * 301.36257 * 12 11 10 35 35 H 1.09003 * 109.47355 * 60.00252 * 16 14 13 36 36 H 1.09000 * 109.46925 * 299.99904 * 16 14 13 37 37 H 1.07995 * 119.56922 * 0.25644 * 18 17 16 38 38 H 1.07994 * 120.18791 * 179.97438 * 19 18 17 39 39 H 1.08001 * 120.91967 * 359.95586 * 21 20 19 40 40 H 1.07996 * 120.03644 * 180.02562 * 22 21 20 41 41 H 1.07996 * 119.12272 * 179.97438 * 23 22 21 42 42 H 1.07996 * 120.12851 * 359.97438 * 26 17 16 43 43 H 1.09003 * 109.50079 * 58.57266 * 27 12 11 44 44 H 1.09001 * 109.49709 * 178.67282 * 27 12 11 45 45 H 1.08997 * 109.59027 * 246.20445 * 28 9 7 46 46 H 1.09004 * 109.58197 * 6.48714 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4354 2.0824 -1.3982 5 1 1.4801 2.6340 0.7613 6 1 3.5775 1.4231 0.6369 7 6 2.0103 -1.2021 0.0005 8 1 1.5223 -2.1072 0.3308 9 7 3.3136 -1.2404 -0.4177 10 6 3.8173 -0.2594 -1.3887 11 6 4.4622 -1.0097 -2.5583 12 6 5.5291 -1.9657 -2.0197 13 8 6.1652 -2.6548 -3.1282 14 6 7.4461 -3.0207 -2.9639 15 8 8.0168 -2.7738 -1.9278 16 6 8.1725 -3.7394 -4.0715 17 6 9.5847 -4.0356 -3.6367 18 6 9.8641 -5.2356 -2.9856 19 6 11.1297 -5.5325 -2.5810 20 6 12.1677 -4.6180 -2.8219 21 6 13.4897 -4.8873 -2.4200 22 6 14.4479 -3.9519 -2.6881 23 6 14.1031 -2.7712 -3.3429 24 7 12.8711 -2.5238 -3.7157 25 6 11.8860 -3.3973 -3.4837 26 6 10.5663 -3.1268 -3.8862 27 6 4.8751 -2.9907 -1.0902 28 6 4.2351 -2.2628 0.0962 29 1 -0.4850 0.8401 -0.0004 30 1 4.5597 0.3797 -0.9107 31 1 2.9923 0.3507 -1.7564 32 1 4.9248 -0.2946 -3.2385 33 1 3.7000 -1.5780 -3.0911 34 1 6.2780 -1.3995 -1.4661 35 1 8.1904 -3.1110 -4.9619 36 1 7.6585 -4.6739 -4.2965 37 1 9.0671 -5.9413 -2.8037 38 1 11.3339 -6.4655 -2.0770 39 1 13.7390 -5.8080 -1.9135 40 1 15.4720 -4.1274 -2.3937 41 1 14.8713 -2.0403 -3.5479 42 1 10.3328 -2.2017 -4.3921 43 1 4.1085 -3.5403 -1.6365 44 1 5.6314 -3.6857 -0.7254 45 1 5.0115 -1.7871 0.6953 46 1 3.6845 -2.9751 0.7107 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873512621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:27 Heat of formation + Delta-G solvation = -8.853631 kcal Electronic energy + Delta-G solvation = -28375.181176 eV Core-core repulsion = 24423.310820 eV Total energy + Delta-G solvation = -3951.870356 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.23576 -40.44796 -38.17633 -37.38493 -35.95969 -34.02467 -32.81733 -32.36502 -30.67019 -30.48526 -30.39924 -28.46272 -25.27319 -24.44375 -23.57290 -22.94828 -22.48521 -21.96639 -20.73102 -19.64180 -18.24792 -17.69476 -17.38368 -17.24039 -16.96212 -16.08824 -15.96970 -15.16479 -14.84865 -14.75093 -14.61562 -14.49287 -14.22387 -13.86592 -13.54703 -13.39659 -13.37081 -13.31452 -12.84120 -12.55962 -12.37134 -12.09451 -11.95606 -11.87662 -11.83042 -11.72696 -11.30736 -10.89559 -10.88148 -10.79298 -10.54458 -10.42302 -10.14341 -9.87982 -9.83256 -9.76363 -9.43720 -9.03675 -8.67770 -8.57979 -7.05198 -5.97927 -3.34641 0.05455 0.44737 1.65703 2.25020 2.41992 2.93322 3.29436 3.47199 3.50016 3.79967 3.87854 4.18778 4.27246 4.43746 4.49853 4.52002 4.63276 4.69082 4.80893 4.88008 4.92293 5.03650 5.11489 5.12937 5.19123 5.21227 5.35925 5.43917 5.53123 5.56573 5.62433 5.73698 5.74579 5.96267 5.99764 6.08297 6.11075 6.12760 6.19149 6.22517 6.31371 6.48824 6.52585 6.55180 6.62679 6.67888 6.91555 7.58094 7.84546 7.91248 8.29413 8.88983 9.67813 10.04280 11.17765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024372 B = 0.002101 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.581933 B =13323.012042 C =13665.998357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.880 3.120 4 H -0.287 1.287 5 H -0.302 1.302 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.087 0.913 9 N -0.606 5.606 10 C 0.129 3.871 11 C -0.129 4.129 12 C 0.098 3.902 13 O -0.355 6.355 14 C 0.458 3.542 15 O -0.501 6.501 16 C -0.079 4.079 17 C -0.053 4.053 18 C -0.096 4.096 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.057 4.057 22 C -0.178 4.178 23 C 0.128 3.872 24 N -0.473 5.473 25 C 0.128 3.872 26 C -0.075 4.075 27 C -0.147 4.147 28 C 0.152 3.848 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.136 0.864 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.026 0.974 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.299 -11.828 -9.822 31.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.710 3.290 4 H -0.215 1.215 5 H -0.230 1.230 6 H -0.195 1.195 7 C -0.390 4.390 8 H 0.105 0.895 9 N -0.329 5.329 10 C 0.003 3.997 11 C -0.169 4.169 12 C 0.044 3.956 13 O -0.272 6.272 14 C 0.300 3.700 15 O -0.389 6.389 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.103 4.103 21 C -0.083 4.083 22 C -0.198 4.198 23 C -0.044 4.044 24 N -0.180 5.180 25 C 0.007 3.993 26 C -0.094 4.094 27 C -0.187 4.187 28 C 0.026 3.974 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.100 0.900 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 26.928 -10.872 -9.894 30.679 hybrid contribution 0.725 0.258 0.598 0.975 sum 27.653 -10.614 -9.297 31.045 Atomic orbital electron populations 1.69835 1.05692 1.26609 1.52730 1.25286 0.95256 0.97582 0.99411 0.86992 0.80143 0.84714 0.77128 1.21492 1.22971 1.19502 1.18918 0.84805 0.94882 1.40347 0.89519 1.44424 1.08785 1.33301 1.46417 1.21373 0.97410 0.92044 0.88908 1.22238 0.97030 0.97700 0.99887 1.22872 0.93892 0.93352 0.85443 1.86542 1.25543 1.69137 1.45961 1.23356 0.81127 0.77140 0.88354 1.90693 1.67609 1.51539 1.29024 1.20377 0.91504 1.02839 0.96894 1.19046 0.93689 0.94583 0.98186 1.20807 0.97108 0.96422 0.97071 1.20928 0.92154 0.98855 0.99590 1.18868 0.94852 0.95976 1.00585 1.21487 0.91610 0.99208 0.96028 1.21894 1.00932 0.95601 1.01341 1.22974 0.93312 0.95410 0.92754 1.68032 1.00495 1.31062 1.18435 1.18790 0.93524 0.90305 0.96658 1.20632 0.90151 0.99125 0.99483 1.22455 0.99936 0.97968 0.98295 1.20882 0.92424 0.91477 0.92651 0.92697 0.95400 0.90031 0.91894 0.90389 0.90243 0.86475 0.86385 0.85233 0.84974 0.84371 0.84513 0.82396 0.84616 0.90841 0.92251 0.95602 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.61 13.97 55.49 0.78 -26.84 16 2 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 3 Si 0.88 22.29 24.35 -169.99 -4.14 18.15 16 4 H -0.29 -6.96 6.62 56.52 0.37 -6.59 16 5 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 6 H -0.27 -6.77 6.64 56.52 0.38 -6.39 16 7 C -0.26 -7.27 10.03 -15.06 -0.15 -7.43 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.46 2.77 -172.31 -0.48 -14.93 16 10 C 0.13 2.81 4.20 -3.71 -0.02 2.80 16 11 C -0.13 -2.34 5.74 -26.61 -0.15 -2.50 16 12 C 0.10 1.69 2.42 -26.69 -0.06 1.63 16 13 O -0.35 -5.36 9.88 -39.24 -0.39 -5.75 16 14 C 0.46 6.26 7.92 36.01 0.29 6.55 16 15 O -0.50 -8.46 15.25 -18.76 -0.29 -8.75 16 16 C -0.08 -0.71 5.91 -29.04 -0.17 -0.88 16 17 C -0.05 -0.54 4.34 -104.98 -0.46 -0.99 16 18 C -0.10 -0.88 9.59 -39.92 -0.38 -1.26 16 19 C -0.10 -0.84 9.78 -39.51 -0.39 -1.22 16 20 C -0.10 -1.01 5.74 -106.80 -0.61 -1.62 16 21 C -0.06 -0.43 9.90 -39.23 -0.39 -0.82 16 22 C -0.18 -1.19 10.03 -39.77 -0.40 -1.59 16 23 C 0.13 1.07 11.15 -17.46 -0.19 0.88 16 24 N -0.47 -5.48 10.34 -10.97 -0.11 -5.59 16 25 C 0.13 1.51 6.60 -84.86 -0.56 0.95 16 26 C -0.08 -0.85 9.58 -39.47 -0.38 -1.23 16 27 C -0.15 -2.57 5.72 -26.61 -0.15 -2.72 16 28 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.61 7.08 -51.93 -0.37 0.24 16 31 H 0.08 1.93 4.50 -51.92 -0.23 1.69 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.45 8.14 -51.94 -0.42 1.02 16 34 H 0.08 1.45 7.16 -51.93 -0.37 1.08 16 35 H 0.12 0.81 8.07 -51.93 -0.42 0.40 16 36 H 0.12 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 40 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 41 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.07 1.39 7.93 -51.93 -0.41 0.98 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -34.70 375.54 -9.75 -44.45 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.49 Total: -0.57 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -4.30 Total: -5.82 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: 0.18 Total: -47.37 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.67 Total: -14.49 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.14 Total: 18.15 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.70 -9.75 -44.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873512621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.593 kcal (2) G-P(sol) polarization free energy of solvation -34.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds