Wall clock time and date at job start Sat Apr 11 2020 06:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46974 * 2 1 4 4 C 1.42894 * 113.99730 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47019 * 180.02562 * 4 3 2 6 6 N 1.31793 * 119.07589 * 89.99987 * 5 4 3 7 7 C 1.32662 * 120.98463 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 120.41712 * 179.97438 * 7 6 5 9 9 C 1.38320 * 119.16507 * 0.02562 * 7 6 5 10 10 C 1.39519 * 118.32347 * 359.97438 * 9 7 6 11 11 N 1.38563 * 120.51988 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99929 * 303.82141 * 11 10 9 13 13 C 1.53058 * 109.36135 * 176.81383 * 12 11 10 14 14 N 1.46949 * 109.36688 * 58.39930 * 13 12 11 15 15 C 1.46897 * 111.00123 * 176.81155 * 14 13 12 16 16 C 1.50696 * 109.47138 * 58.97944 * 15 14 13 17 17 H 1.07995 * 120.00069 * 5.01382 * 16 15 14 18 18 C 1.37877 * 120.00190 * 185.01002 * 16 15 14 19 19 N 1.31522 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00157 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47089 * 90.00356 * 20 18 16 22 22 H 1.48507 * 109.47234 * 210.00121 * 20 18 16 23 23 H 1.48500 * 109.47116 * 330.00159 * 20 18 16 24 24 C 1.46957 * 110.88291 * 300.68400 * 14 13 12 25 25 C 1.46957 * 111.00030 * 180.02562 * 11 10 9 26 26 N 1.31740 * 119.07941 * 270.02322 * 5 4 3 27 27 H 1.09008 * 109.46985 * 60.00322 * 1 2 3 28 28 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47562 * 300.00131 * 1 2 3 30 30 H 1.09000 * 109.47714 * 240.00397 * 2 1 3 31 31 H 1.08995 * 109.47250 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47376 * 60.00559 * 4 3 2 33 33 H 1.09001 * 109.47627 * 299.99740 * 4 3 2 34 34 H 1.08000 * 120.83246 * 180.02562 * 9 7 6 35 35 H 1.08993 * 109.49011 * 296.77746 * 12 11 10 36 36 H 1.08998 * 109.49090 * 56.84906 * 12 11 10 37 37 H 1.09002 * 109.48681 * 298.43016 * 13 12 11 38 38 H 1.08995 * 109.48444 * 178.37030 * 13 12 11 39 39 H 1.09005 * 109.47402 * 178.98508 * 15 14 13 40 40 H 1.08997 * 109.47166 * 298.97606 * 15 14 13 41 41 H 0.96999 * 119.99791 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.48483 * 299.34901 * 24 14 13 43 43 H 1.08997 * 109.48911 * 179.28786 * 24 14 13 44 44 H 1.09007 * 109.48296 * 303.15554 * 25 11 10 45 45 H 1.08996 * 109.48866 * 63.19767 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 7 3.9840 3.5347 1.1533 7 6 4.3254 4.8159 1.1980 8 17 4.5378 5.6161 2.7238 9 6 4.5089 5.5063 0.0135 10 6 4.3263 4.8204 -1.1876 11 7 4.4978 5.4677 -2.4007 12 6 3.6331 6.6524 -2.4923 13 6 3.9094 7.3818 -3.8092 14 7 3.6656 6.4672 -4.9333 15 6 3.8474 7.1534 -6.2193 16 6 5.2512 7.6945 -6.3059 17 1 5.9637 7.4750 -5.5246 18 6 5.6260 8.4698 -7.3827 19 7 4.7582 8.7375 -8.3340 20 14 7.3663 9.1400 -7.4904 21 1 8.2280 8.1667 -8.2082 22 1 7.3556 10.4292 -8.2273 23 1 7.8988 9.3568 -6.1212 24 6 4.5301 5.2824 -4.8416 25 6 4.2538 4.5531 -3.5248 26 7 3.9844 3.5353 -1.1499 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8339 0.9766 -0.8892 33 1 3.8332 0.9768 0.8908 34 1 4.7874 6.5497 0.0185 35 1 2.5883 6.3435 -2.4600 36 1 3.8412 7.3201 -1.6563 37 1 4.9472 7.7146 -3.8298 38 1 3.2488 8.2447 -3.8925 39 1 3.6785 6.4491 -7.0340 40 1 3.1357 7.9753 -6.2964 41 1 5.0218 9.2832 -9.0913 42 1 5.5750 5.5913 -4.8739 43 1 4.3220 4.6148 -5.6777 44 1 4.9145 3.6901 -3.4414 45 1 3.2161 4.2200 -3.5040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895028064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:41 Heat of formation + Delta-G solvation = 18.786158 kcal Electronic energy + Delta-G solvation = -27191.255919 eV Core-core repulsion = 23270.444016 eV Total energy + Delta-G solvation = -3920.811903 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -41.52482 -39.06824 -38.19481 -37.10308 -35.77213 -33.35992 -32.87168 -31.98537 -31.20080 -30.57461 -27.97100 -27.55921 -25.39695 -23.99143 -23.15285 -23.08927 -22.29125 -21.62737 -19.45381 -18.13090 -17.84548 -17.09509 -16.43705 -16.19059 -15.84233 -15.55899 -15.34994 -14.94825 -14.84344 -14.42255 -14.25928 -14.18635 -13.62190 -13.39283 -13.24861 -13.02245 -12.71083 -12.38913 -12.14419 -12.00752 -11.78757 -11.67936 -11.55102 -11.21666 -11.09659 -11.07078 -10.87885 -10.80683 -10.63039 -10.49543 -10.23389 -9.96821 -9.93577 -9.88976 -9.64709 -9.59386 -8.53919 -8.48663 -7.30875 -6.08569 -4.17912 0.51120 0.76857 1.34382 2.88401 3.24117 3.31483 3.34148 3.35705 3.53610 4.00005 4.16916 4.36225 4.54808 4.74184 4.79642 4.84141 4.88749 5.00727 5.06415 5.06613 5.13350 5.21683 5.24520 5.37194 5.39097 5.55714 5.61904 5.64059 5.71148 5.83580 5.87099 5.91541 6.08478 6.43656 6.45646 6.61735 6.67339 6.80427 6.90945 6.95494 7.17676 7.45571 7.81474 7.82972 7.92226 8.14293 8.21267 8.91965 9.49488 10.96748 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002708 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.775876 B =10338.333915 C =11923.765112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.379 6.379 4 C 0.137 3.863 5 C 0.365 3.635 6 N -0.528 5.528 7 C 0.237 3.763 8 Cl -0.015 7.015 9 C -0.227 4.227 10 C 0.382 3.618 11 N -0.466 5.466 12 C 0.062 3.938 13 C 0.063 3.937 14 N -0.544 5.544 15 C 0.188 3.812 16 C -0.552 4.552 17 H 0.059 0.941 18 C 0.066 3.934 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.059 3.941 25 C 0.069 3.931 26 N -0.535 5.535 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.160 0.840 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.029 0.971 40 H 0.036 0.964 41 H 0.263 0.737 42 H 0.049 0.951 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.936 -13.397 19.340 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.298 6.298 4 C 0.059 3.941 5 C 0.095 3.905 6 N -0.249 5.249 7 C 0.067 3.933 8 Cl 0.014 6.986 9 C -0.254 4.254 10 C 0.141 3.859 11 N -0.182 5.182 12 C -0.063 4.063 13 C -0.066 4.066 14 N -0.268 5.268 15 C 0.062 3.938 16 C -0.591 4.591 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.070 4.070 25 C -0.057 4.057 26 N -0.257 5.257 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.177 0.823 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.340 -13.942 19.189 24.113 hybrid contribution 1.783 1.292 -0.006 2.202 sum -2.557 -12.650 19.183 23.120 Atomic orbital electron populations 1.21743 0.93477 1.02311 1.03369 1.22506 0.95793 0.83010 1.00380 1.87942 1.19126 1.27163 1.95546 1.20890 0.82931 0.87754 1.02543 1.22338 0.90383 0.95820 0.81999 1.67548 1.17513 1.08905 1.30940 1.21654 0.93850 0.89875 0.87960 1.98427 1.94673 1.76460 1.29079 1.22104 1.08931 1.03792 0.90531 1.20190 0.86222 0.88384 0.91134 1.58992 1.50015 1.09221 0.99991 1.22563 0.93993 0.89193 1.00524 1.21974 1.01647 0.94917 0.88036 1.62736 1.51998 1.07404 1.04690 1.19743 0.95721 0.93776 0.84515 1.21733 0.98040 1.32411 1.06878 0.92335 1.24960 0.97204 0.95944 0.95608 1.69943 1.34361 1.38208 1.10329 0.86641 0.84995 0.78489 0.78182 1.20624 1.21136 1.19918 1.22051 0.97146 0.93325 0.94497 1.22278 1.01530 0.93803 0.88120 1.68250 1.16832 1.10269 1.30316 0.91655 0.90917 0.91828 0.92914 0.93076 0.90080 0.90310 0.82282 0.92639 0.89941 0.92632 0.90166 0.95262 0.94560 0.92747 0.93248 0.90441 0.89881 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.15 0.38 -0.71 16 2 C 0.06 0.47 6.66 37.15 0.25 0.72 16 3 O -0.38 -4.42 10.33 -35.23 -0.36 -4.78 16 4 C 0.14 1.45 6.37 36.01 0.23 1.68 16 5 C 0.36 4.93 7.27 -157.24 -1.14 3.78 16 6 N -0.53 -7.25 10.33 -7.93 -0.08 -7.33 16 7 C 0.24 3.03 7.33 -17.16 -0.13 2.90 16 8 Cl -0.01 -0.16 29.15 -51.86 -1.51 -1.67 16 9 C -0.23 -2.88 9.10 -39.07 -0.36 -3.24 16 10 C 0.38 5.52 6.40 -154.77 -0.99 4.53 16 11 N -0.47 -7.13 4.74 -172.88 -0.82 -7.95 16 12 C 0.06 0.92 5.37 -3.76 -0.02 0.90 16 13 C 0.06 1.14 5.24 -3.77 -0.02 1.12 16 14 N -0.54 -11.05 4.92 -235.92 -1.16 -12.21 16 15 C 0.19 4.62 5.14 -4.98 -0.03 4.60 16 16 C -0.55 -14.57 7.66 -34.44 -0.26 -14.83 16 17 H 0.06 1.54 5.82 -52.49 -0.31 1.24 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -25.55 13.29 55.43 0.74 -24.81 16 20 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.06 1.09 5.32 -3.77 -0.02 1.07 16 25 C 0.07 1.09 4.80 -3.77 -0.02 1.08 16 26 N -0.53 -7.80 8.77 -9.98 -0.09 -7.89 16 27 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.16 1.71 7.26 -52.49 -0.38 1.33 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.01 6.86 -51.93 -0.36 0.65 16 37 H 0.06 1.11 6.62 -51.93 -0.34 0.77 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.03 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 1.01 6.78 -51.93 -0.35 0.66 16 43 H 0.08 1.41 8.12 -51.93 -0.42 0.99 16 44 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 45 H 0.06 0.98 8.06 -51.93 -0.42 0.56 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -29.85 379.98 -11.57 -41.43 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.77 Total: -1.78 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.22 Total: 5.30 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -1.41 Total: -60.19 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.36 Total: -4.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.51 Total: -1.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.85 -11.57 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895028064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.213 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds