Wall clock time and date at job start Sat Apr 11 2020 06:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46974 * 2 1 4 4 C 1.42894 * 113.99730 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47019 * 180.02562 * 4 3 2 6 6 N 1.31793 * 119.07589 * 89.99987 * 5 4 3 7 7 C 1.32662 * 120.98463 * 180.02562 * 6 5 4 8 8 Cl 1.73601 * 120.41712 * 179.97438 * 7 6 5 9 9 C 1.38320 * 119.16507 * 0.02562 * 7 6 5 10 10 C 1.39519 * 118.32347 * 359.97438 * 9 7 6 11 11 N 1.38563 * 120.51988 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99929 * 303.82141 * 11 10 9 13 13 C 1.53058 * 109.36135 * 176.81383 * 12 11 10 14 14 N 1.46949 * 109.36688 * 58.39930 * 13 12 11 15 15 C 1.46897 * 111.00123 * 176.81155 * 14 13 12 16 16 C 1.50696 * 109.47138 * 58.97944 * 15 14 13 17 17 H 1.07995 * 120.00069 * 5.01382 * 16 15 14 18 18 C 1.37877 * 120.00190 * 185.01002 * 16 15 14 19 19 N 1.31522 * 119.99813 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00157 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47089 * 90.00356 * 20 18 16 22 22 H 1.48507 * 109.47234 * 210.00121 * 20 18 16 23 23 H 1.48500 * 109.47116 * 330.00159 * 20 18 16 24 24 C 1.46957 * 110.88291 * 300.68400 * 14 13 12 25 25 C 1.46957 * 111.00030 * 180.02562 * 11 10 9 26 26 N 1.31740 * 119.07941 * 270.02322 * 5 4 3 27 27 H 1.09008 * 109.46985 * 60.00322 * 1 2 3 28 28 H 1.08998 * 109.47331 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47562 * 300.00131 * 1 2 3 30 30 H 1.09000 * 109.47714 * 240.00397 * 2 1 3 31 31 H 1.08995 * 109.47250 * 119.99879 * 2 1 3 32 32 H 1.09001 * 109.47376 * 60.00559 * 4 3 2 33 33 H 1.09001 * 109.47627 * 299.99740 * 4 3 2 34 34 H 1.08000 * 120.83246 * 180.02562 * 9 7 6 35 35 H 1.08993 * 109.49011 * 296.77746 * 12 11 10 36 36 H 1.08998 * 109.49090 * 56.84906 * 12 11 10 37 37 H 1.09002 * 109.48681 * 298.43016 * 13 12 11 38 38 H 1.08995 * 109.48444 * 178.37030 * 13 12 11 39 39 H 1.09005 * 109.47402 * 178.98508 * 15 14 13 40 40 H 1.08997 * 109.47166 * 298.97606 * 15 14 13 41 41 H 0.96999 * 119.99791 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.48483 * 299.34901 * 24 14 13 43 43 H 1.08997 * 109.48911 * 179.28786 * 24 14 13 44 44 H 1.09007 * 109.48296 * 303.15554 * 25 11 10 45 45 H 1.08996 * 109.48866 * 63.19767 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4307 1.4602 0.0006 5 6 3.8193 2.9162 0.0012 6 7 3.9840 3.5347 1.1533 7 6 4.3254 4.8159 1.1980 8 17 4.5378 5.6161 2.7238 9 6 4.5089 5.5063 0.0135 10 6 4.3263 4.8204 -1.1876 11 7 4.4978 5.4677 -2.4007 12 6 3.6331 6.6524 -2.4923 13 6 3.9094 7.3818 -3.8092 14 7 3.6656 6.4672 -4.9333 15 6 3.8474 7.1534 -6.2193 16 6 5.2512 7.6945 -6.3059 17 1 5.9637 7.4750 -5.5246 18 6 5.6260 8.4698 -7.3827 19 7 4.7582 8.7375 -8.3340 20 14 7.3663 9.1400 -7.4904 21 1 8.2280 8.1667 -8.2082 22 1 7.3556 10.4292 -8.2273 23 1 7.8988 9.3568 -6.1212 24 6 4.5301 5.2824 -4.8416 25 6 4.2538 4.5531 -3.5248 26 7 3.9844 3.5353 -1.1499 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8339 0.9766 -0.8892 33 1 3.8332 0.9768 0.8908 34 1 4.7874 6.5497 0.0185 35 1 2.5883 6.3435 -2.4600 36 1 3.8412 7.3201 -1.6563 37 1 4.9472 7.7146 -3.8298 38 1 3.2488 8.2447 -3.8925 39 1 3.6785 6.4491 -7.0340 40 1 3.1357 7.9753 -6.2964 41 1 5.0218 9.2832 -9.0913 42 1 5.5750 5.5913 -4.8739 43 1 4.3220 4.6148 -5.6777 44 1 4.9145 3.6901 -3.4414 45 1 3.2161 4.2200 -3.5040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895028064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:39 Heat of formation + Delta-G solvation = -0.879908 kcal Electronic energy + Delta-G solvation = -27192.108704 eV Core-core repulsion = 23270.444016 eV Total energy + Delta-G solvation = -3921.664688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -42.57111 -40.35169 -38.99657 -38.04925 -37.22002 -34.73745 -34.27664 -33.21470 -32.19302 -31.75338 -29.63801 -28.44298 -27.12012 -25.18175 -24.54854 -23.68471 -23.60485 -23.04725 -20.95398 -19.20473 -18.96975 -18.37959 -17.85934 -17.00915 -16.88118 -16.75078 -16.49358 -16.33716 -15.98474 -15.85809 -15.67354 -15.46063 -14.95871 -14.85372 -14.27693 -13.92230 -13.75839 -13.63240 -13.42382 -13.19574 -12.96909 -12.86243 -12.69128 -12.52234 -12.35463 -12.31978 -12.25139 -12.23018 -12.05019 -11.89448 -11.76721 -11.69349 -11.51798 -10.89295 -10.65386 -10.64538 -10.60264 -9.69095 -9.07764 -8.15714 -6.34467 -0.46937 -0.28139 0.40455 1.37609 1.38852 1.48731 1.94329 2.30719 2.37788 2.58469 3.10039 3.12568 3.18008 3.29006 3.57693 3.77443 3.89134 4.05159 4.08238 4.17433 4.21174 4.31217 4.34897 4.37973 4.41998 4.44740 4.53198 4.56544 4.72033 4.76672 4.86101 4.98078 5.02724 5.05094 5.16019 5.19487 5.27875 5.33569 5.34260 5.71629 5.78715 5.80675 6.01679 6.13388 6.21675 6.44516 6.79263 6.85432 7.37121 8.87197 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012532 B = 0.002708 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.775876 B =10338.333915 C =11923.765112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.407 6.407 4 C 0.138 3.862 5 C 0.355 3.645 6 N -0.536 5.536 7 C 0.231 3.769 8 Cl 0.005 6.995 9 C -0.221 4.221 10 C 0.369 3.631 11 N -0.474 5.474 12 C 0.073 3.927 13 C 0.065 3.935 14 N -0.545 5.545 15 C 0.202 3.798 16 C -0.554 4.554 17 H 0.058 0.942 18 C 0.013 3.987 19 N -0.926 5.926 20 Si 0.955 3.045 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.267 1.267 24 C 0.064 3.936 25 C 0.086 3.914 26 N -0.548 5.548 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.180 0.820 35 H 0.056 0.944 36 H 0.114 0.886 37 H 0.036 0.964 38 H 0.080 0.920 39 H 0.005 0.995 40 H 0.012 0.988 41 H 0.265 0.735 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.148 -14.065 21.411 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.326 6.326 4 C 0.060 3.940 5 C 0.085 3.915 6 N -0.257 5.257 7 C 0.061 3.939 8 Cl 0.033 6.967 9 C -0.248 4.248 10 C 0.129 3.871 11 N -0.190 5.190 12 C -0.052 4.052 13 C -0.064 4.064 14 N -0.269 5.269 15 C 0.075 3.925 16 C -0.593 4.593 17 H 0.076 0.924 18 C -0.186 4.186 19 N -0.565 5.565 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.192 1.192 24 C -0.065 4.065 25 C -0.041 4.041 26 N -0.271 5.271 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.197 0.803 35 H 0.074 0.926 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.023 0.977 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.553 -14.630 21.295 26.079 hybrid contribution 1.481 1.452 -0.557 2.147 sum -2.073 -13.178 20.738 24.658 Atomic orbital electron populations 1.21777 0.93191 1.03522 1.02341 1.22736 0.96062 0.81744 1.01744 1.87901 1.19578 1.29361 1.95794 1.21021 0.82809 0.86228 1.03980 1.22897 0.89982 0.96954 0.81628 1.67641 1.17570 1.09403 1.31099 1.21882 0.93376 0.89799 0.88877 1.98434 1.94480 1.75997 1.27760 1.22254 1.08121 1.04598 0.89791 1.20210 0.87126 0.88727 0.91072 1.58991 1.50586 1.09217 1.00217 1.22469 0.93991 0.89413 0.99341 1.21973 1.00422 0.95087 0.88874 1.62651 1.52593 1.07986 1.03656 1.19388 0.94444 0.92523 0.86133 1.21954 0.98651 1.32033 1.06675 0.92389 1.25777 1.01123 0.96384 0.95331 1.70061 1.36355 1.39117 1.11004 0.85601 0.80179 0.77818 0.78369 1.20154 1.20754 1.19179 1.22014 0.95497 0.92665 0.96341 1.22024 1.01414 0.93696 0.86952 1.68243 1.17234 1.10485 1.31095 0.92951 0.88603 0.92538 0.91811 0.91373 0.88925 0.88523 0.80313 0.92608 0.86788 0.94544 0.90193 0.97712 0.97030 0.92618 0.95216 0.90715 0.88921 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.24 16 2 C 0.05 0.75 6.66 71.98 0.48 1.23 16 3 O -0.41 -8.94 10.33 -148.98 -1.54 -10.48 16 4 C 0.14 2.68 6.37 71.24 0.45 3.13 16 5 C 0.36 9.05 7.27 138.77 1.01 10.06 16 6 N -0.54 -13.75 10.33 -179.00 -1.85 -15.60 16 7 C 0.23 5.42 7.33 84.59 0.62 6.04 16 8 Cl 0.00 0.09 29.15 -2.72 -0.08 0.01 16 9 C -0.22 -5.12 9.10 22.60 0.21 -4.91 16 10 C 0.37 10.04 6.40 133.12 0.85 10.89 16 11 N -0.47 -13.84 4.74 -700.86 -3.32 -17.16 16 12 C 0.07 2.04 5.37 86.31 0.46 2.50 16 13 C 0.07 2.35 5.24 86.31 0.45 2.80 16 14 N -0.54 -22.53 4.92 -900.31 -4.43 -26.96 16 15 C 0.20 10.28 5.14 85.56 0.44 10.72 16 16 C -0.55 -29.77 7.66 25.60 0.20 -29.57 16 17 H 0.06 3.08 5.82 -2.91 -0.02 3.06 16 18 C 0.01 0.74 5.46 84.65 0.46 1.20 16 19 N -0.93 -54.11 13.29 21.45 0.28 -53.83 16 20 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 21 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.06 2.38 5.32 86.31 0.46 2.84 16 25 C 0.09 2.66 4.80 86.31 0.41 3.08 16 26 N -0.55 -15.23 8.77 -185.48 -1.63 -16.85 16 27 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.18 3.29 7.26 -2.91 -0.02 3.27 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 2.47 6.86 -2.39 -0.02 2.46 16 37 H 0.04 1.46 6.62 -2.39 -0.02 1.44 16 38 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 39 H 0.00 0.26 8.12 -2.38 -0.02 0.24 16 40 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.03 1.23 6.78 -2.38 -0.02 1.21 16 43 H 0.07 2.79 8.12 -2.39 -0.02 2.77 16 44 H 0.09 2.71 7.84 -2.38 -0.02 2.69 16 45 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 Total: -1.00 -64.41 379.98 -2.29 -66.69 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.99 Total: 10.23 kcal Atomic # 6 Polarization: 11.51 SS G_CDS: 7.25 Total: 18.76 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -10.94 Total: -130.40 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -1.54 Total: -10.48 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.01 kcal Total: -64.41 -2.29 -66.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895028064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.814 kcal (2) G-P(sol) polarization free energy of solvation -64.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds