Wall clock time and date at job start Sat Apr 11 2020 06:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48491 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47059 * 300.00383 * 3 2 1 6 6 H 1.48503 * 109.47020 * 59.99828 * 3 2 1 7 7 C 1.37876 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00006 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.63538 * 56.86664 * 9 7 2 11 11 C 1.55156 * 110.71965 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 C 1.34783 * 125.62758 * 204.13325 * 13 12 11 15 15 O 1.21580 * 119.99781 * 179.91875 * 14 13 12 16 16 N 1.34777 * 119.99931 * 359.92659 * 14 13 12 17 17 C 1.46495 * 119.99661 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.20552 * 325.63487 * 17 16 14 19 19 C 1.52539 * 109.20995 * 84.99789 * 17 16 14 20 20 C 1.53148 * 110.18673 * 192.78607 * 19 17 16 21 21 S 1.81942 * 108.59732 * 295.39163 * 20 19 17 22 22 C 1.81477 * 101.91803 * 51.52237 * 21 20 19 23 23 C 1.53211 * 113.50742 * 178.83431 * 22 21 20 24 24 C 1.53897 * 86.90687 * 220.23224 * 23 22 21 25 25 C 1.53226 * 113.47970 * 80.75142 * 22 21 20 26 26 C 1.52695 * 112.25733 * 309.83207 * 22 21 20 27 27 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 28 28 H 0.97006 * 120.00080 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99876 * 303.13748 * 10 9 7 30 30 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 31 31 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 32 32 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 33 33 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 34 34 H 0.97003 * 120.00022 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.35345 * 313.00635 * 19 17 16 36 36 H 1.08996 * 109.35396 * 72.71514 * 19 17 16 37 37 H 1.09007 * 109.61419 * 55.12177 * 20 19 17 38 38 H 1.08995 * 109.61811 * 175.47309 * 20 19 17 39 39 H 1.09005 * 113.63923 * 334.73115 * 23 22 21 40 40 H 1.08998 * 113.64281 * 105.72781 * 23 22 21 41 41 H 1.08999 * 113.59130 * 270.43268 * 24 23 22 42 42 H 1.08994 * 113.59424 * 139.58815 * 24 23 22 43 43 H 1.08998 * 113.64196 * 254.30343 * 25 22 21 44 44 H 1.09003 * 113.63976 * 25.29381 * 25 22 21 45 45 H 1.09000 * 109.42882 * 299.07573 * 26 22 21 46 46 H 1.09003 * 109.42676 * 179.23883 * 26 22 21 47 47 H 1.08998 * 109.88206 * 239.55467 * 27 13 12 48 48 H 1.09004 * 110.01118 * 118.46560 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1201 11 6 2.2332 -3.7002 -0.0005 12 6 1.3764 -4.8039 0.6682 13 7 0.5944 -4.0999 1.7014 14 6 0.0730 -4.6616 2.8101 15 8 -0.5560 -3.9817 3.5978 16 7 0.2489 -5.9769 3.0457 17 6 -0.3173 -6.5873 4.2511 18 1 -0.2838 -5.8662 5.0677 19 6 -1.7681 -6.9750 3.9832 20 6 -2.4751 -7.3172 5.2979 21 16 -1.6919 -8.7971 6.0098 22 6 0.0635 -8.3369 5.9930 23 6 0.9832 -9.4136 6.5780 24 6 1.7668 -8.2664 7.2401 25 6 0.4708 -7.4400 7.1667 26 6 0.5112 -7.8135 4.6302 27 6 0.4790 -2.6840 1.3228 28 1 -0.4850 0.8401 0.0004 29 1 -0.2690 -1.8414 -1.1661 30 1 2.5074 -3.9808 -1.0175 31 1 3.1198 -3.4798 0.5941 32 1 0.7113 -5.2632 -0.0632 33 1 2.0178 -5.5577 1.1249 34 1 0.7505 -6.5194 2.4171 35 1 -2.2818 -6.1422 3.5030 36 1 -1.7943 -7.8434 3.3249 37 1 -2.3797 -6.4826 5.9926 38 1 -3.5296 -7.5146 5.1057 39 1 0.4868 -10.0723 7.2907 40 1 1.5550 -9.9561 5.8252 41 1 2.5713 -7.8724 6.6192 42 1 2.0864 -8.4872 8.2585 43 1 0.6314 -6.3990 6.8861 44 1 -0.1680 -7.5500 8.0430 45 1 0.3719 -8.5914 3.8795 46 1 1.5651 -7.5391 4.6755 47 1 0.9171 -2.0560 2.0984 48 1 -0.5691 -2.4201 1.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927280779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:00 Heat of formation + Delta-G solvation = -61.078767 kcal Electronic energy + Delta-G solvation = -28490.486569 eV Core-core repulsion = 24671.795512 eV Total energy + Delta-G solvation = -3818.691056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -40.26346 -39.38477 -37.62585 -35.97495 -34.31753 -32.60296 -32.18234 -30.22531 -29.62117 -27.84637 -26.17711 -25.96662 -24.70707 -23.80371 -22.70409 -21.05152 -19.81605 -19.57724 -19.01492 -17.80709 -17.21431 -16.89473 -16.29639 -15.57157 -15.35770 -15.06132 -14.93106 -14.52996 -14.41022 -14.16052 -13.88142 -13.40233 -13.11550 -13.03316 -12.98891 -12.82203 -12.71195 -12.57014 -12.19628 -11.90183 -11.69487 -11.64479 -11.50966 -11.23289 -11.08893 -10.92602 -10.84525 -10.79569 -10.67917 -10.49778 -10.31464 -10.19029 -9.84337 -9.63420 -9.37033 -8.94626 -8.69426 -8.33635 -7.85687 -7.81558 -6.31379 -4.39791 1.59171 2.30334 2.97316 3.18966 3.27670 3.30888 3.65482 4.02028 4.18336 4.22018 4.28229 4.43176 4.48917 4.63857 4.79741 4.86061 4.96536 5.01610 5.10746 5.26999 5.34018 5.34671 5.42240 5.46101 5.55647 5.58414 5.65047 5.66811 5.73546 5.75842 5.79668 5.91722 5.98789 6.03421 6.05451 6.12007 6.47561 6.68802 6.69169 6.84216 6.94615 7.22024 7.29507 7.57881 7.71816 7.99214 8.46937 8.63837 9.06233 9.29119 9.41512 10.76463 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.002534 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.202291 B =11046.380550 C =11195.081992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.116 4.116 12 C 0.103 3.897 13 N -0.628 5.628 14 C 0.716 3.284 15 O -0.596 6.596 16 N -0.747 5.747 17 C 0.162 3.838 18 H 0.089 0.911 19 C -0.133 4.133 20 C -0.074 4.074 21 S -0.263 6.263 22 C -0.040 4.040 23 C -0.107 4.107 24 C -0.137 4.137 25 C -0.129 4.129 26 C -0.105 4.105 27 C 0.121 3.879 28 H 0.270 0.730 29 H 0.386 0.614 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.393 0.607 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.063 0.937 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 -18.097 10.266 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.154 4.154 12 C -0.020 4.020 13 N -0.365 5.365 14 C 0.418 3.582 15 O -0.475 6.475 16 N -0.403 5.403 17 C 0.056 3.944 18 H 0.107 0.893 19 C -0.173 4.173 20 C -0.223 4.223 21 S -0.033 6.033 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.176 4.176 25 C -0.168 4.168 26 C -0.145 4.145 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.238 0.762 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.227 0.773 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.122 0.878 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.081 0.919 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.338 -18.964 11.124 21.989 hybrid contribution 0.685 2.280 -0.631 2.463 sum 1.024 -16.684 10.493 19.736 Atomic orbital electron populations 1.69582 1.06022 1.27895 1.49961 1.25080 0.95056 0.99829 0.93355 0.86335 0.80034 0.82684 0.77780 1.19588 1.20718 1.20750 1.21558 0.93725 0.90099 1.52110 0.91463 1.19478 0.85881 0.92064 0.81807 1.86069 1.51437 1.53465 1.48660 1.22731 0.97655 0.94896 1.00150 1.22248 0.93844 0.95584 0.90328 1.47958 1.55410 1.12280 1.20872 1.15516 0.79972 0.81296 0.81444 1.90882 1.46784 1.61990 1.47829 1.45153 1.60648 1.08359 1.26141 1.20589 0.91517 0.94137 0.88149 0.89337 1.22147 0.95885 1.02812 0.96444 1.23413 1.02088 0.97484 0.99291 1.86753 1.04890 1.28169 1.83465 1.23808 0.92833 1.01072 0.97343 1.22732 0.96132 0.95761 0.99956 1.22872 0.96675 0.96584 1.01434 1.23238 0.97405 0.98918 0.97259 1.21739 1.00509 0.97443 0.94808 1.22891 1.01469 0.76672 0.99116 0.91940 0.76165 0.90561 0.90594 0.91980 0.92665 0.77307 0.89831 0.90742 0.89492 0.87771 0.89139 0.90418 0.89743 0.90770 0.90560 0.88778 0.90074 0.89859 0.91883 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.68 10.97 55.43 0.61 -23.07 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.54 -13.84 8.10 -34.44 -0.28 -14.12 16 8 H 0.07 1.71 7.76 -52.49 -0.41 1.30 16 9 C 0.25 5.91 0.86 -89.94 -0.08 5.84 16 10 O -0.59 -14.65 13.10 -35.23 -0.46 -15.11 16 11 C -0.12 -2.25 6.22 -24.58 -0.15 -2.40 16 12 C 0.10 1.74 6.57 -2.50 -0.02 1.72 16 13 N -0.63 -12.65 3.33 -176.21 -0.59 -13.23 16 14 C 0.72 13.92 8.38 -86.91 -0.73 13.19 16 15 O -0.60 -13.87 16.31 5.29 0.09 -13.79 16 16 N -0.75 -10.53 5.01 -59.03 -0.30 -10.83 16 17 C 0.16 1.98 2.18 -68.29 -0.15 1.83 16 18 H 0.09 1.29 6.33 -51.93 -0.33 0.96 16 19 C -0.13 -1.57 5.27 -26.89 -0.14 -1.71 16 20 C -0.07 -0.79 6.48 37.23 0.24 -0.54 16 21 S -0.26 -2.73 21.59 -107.50 -2.32 -5.05 16 22 C -0.04 -0.36 0.98 -90.55 -0.09 -0.45 16 23 C -0.11 -0.79 7.27 -26.15 -0.19 -0.98 16 24 C -0.14 -0.98 7.74 -25.81 -0.20 -1.18 16 25 C -0.13 -1.12 7.06 -26.16 -0.18 -1.31 16 26 C -0.11 -0.98 4.37 -27.01 -0.12 -1.10 16 27 C 0.12 2.90 5.54 -3.07 -0.02 2.88 16 28 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 29 H 0.39 10.01 6.98 45.56 0.32 10.33 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.41 8.02 -51.93 -0.42 1.00 16 32 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 33 H 0.06 0.73 7.30 -51.93 -0.38 0.35 16 34 H 0.39 4.61 7.08 -40.82 -0.29 4.32 16 35 H 0.08 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 37 H 0.09 0.96 8.12 -51.92 -0.42 0.54 16 38 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 41 H 0.08 0.59 7.66 -51.93 -0.40 0.19 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.76 7.14 -51.93 -0.37 0.39 16 44 H 0.09 0.81 8.09 -51.93 -0.42 0.39 16 45 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 46 H 0.08 0.73 7.38 -51.93 -0.38 0.35 16 47 H 0.06 1.65 7.81 -51.93 -0.41 1.25 16 48 H 0.06 1.63 8.07 -51.93 -0.42 1.21 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -29.35 382.51 -11.67 -41.02 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -7.24 Total: 15.64 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.20 Total: 3.39 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.27 Total: -47.13 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -0.38 Total: -28.90 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.32 Total: -5.05 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.35 -11.67 -41.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927280779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.058 kcal (2) G-P(sol) polarization free energy of solvation -29.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds