Wall clock time and date at job start Sat Apr 11 2020 06:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 120.00337 * 2 1 4 4 H 1.48491 * 109.47381 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47059 * 300.00383 * 3 2 1 6 6 H 1.48503 * 109.47020 * 59.99828 * 3 2 1 7 7 C 1.37876 * 119.99964 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00006 * 359.97438 * 7 2 1 10 10 O 1.42903 * 110.63538 * 56.86664 * 9 7 2 11 11 C 1.55156 * 110.71965 * 180.02562 * 9 7 2 12 12 C 1.54906 * 101.61451 * 153.84937 * 11 9 7 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 C 1.34783 * 125.62758 * 204.13325 * 13 12 11 15 15 O 1.21580 * 119.99781 * 179.91875 * 14 13 12 16 16 N 1.34777 * 119.99931 * 359.92659 * 14 13 12 17 17 C 1.46495 * 119.99661 * 179.97438 * 16 14 13 18 18 H 1.08998 * 109.20552 * 325.63487 * 17 16 14 19 19 C 1.52539 * 109.20995 * 84.99789 * 17 16 14 20 20 C 1.53148 * 110.18673 * 192.78607 * 19 17 16 21 21 S 1.81942 * 108.59732 * 295.39163 * 20 19 17 22 22 C 1.81477 * 101.91803 * 51.52237 * 21 20 19 23 23 C 1.53211 * 113.50742 * 178.83431 * 22 21 20 24 24 C 1.53897 * 86.90687 * 220.23224 * 23 22 21 25 25 C 1.53226 * 113.47970 * 80.75142 * 22 21 20 26 26 C 1.52695 * 112.25733 * 309.83207 * 22 21 20 27 27 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 28 28 H 0.97006 * 120.00080 * 359.97438 * 1 2 3 29 29 H 0.96701 * 113.99876 * 303.13748 * 10 9 7 30 30 H 1.09002 * 111.00677 * 271.94521 * 11 9 7 31 31 H 1.09002 * 111.00564 * 35.75779 * 11 9 7 32 32 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 33 33 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 34 34 H 0.97003 * 120.00022 * 359.97438 * 16 14 13 35 35 H 1.09000 * 109.35345 * 313.00635 * 19 17 16 36 36 H 1.08996 * 109.35396 * 72.71514 * 19 17 16 37 37 H 1.09007 * 109.61419 * 55.12177 * 20 19 17 38 38 H 1.08995 * 109.61811 * 175.47309 * 20 19 17 39 39 H 1.09005 * 113.63923 * 334.73115 * 23 22 21 40 40 H 1.08998 * 113.64281 * 105.72781 * 23 22 21 41 41 H 1.08999 * 113.59130 * 270.43268 * 24 23 22 42 42 H 1.08994 * 113.59424 * 139.58815 * 24 23 22 43 43 H 1.08998 * 113.64196 * 254.30343 * 25 22 21 44 44 H 1.09003 * 113.63976 * 25.29381 * 25 22 21 45 45 H 1.09000 * 109.42882 * 299.07573 * 26 22 21 46 46 H 1.09003 * 109.42676 * 179.23883 * 26 22 21 47 47 H 1.08998 * 109.88206 * 239.55467 * 27 13 12 48 48 H 1.09004 * 110.01118 * 118.46560 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 0.3656 -2.5696 -1.1201 11 6 2.2332 -3.7002 -0.0005 12 6 1.3764 -4.8039 0.6682 13 7 0.5944 -4.0999 1.7014 14 6 0.0730 -4.6616 2.8101 15 8 -0.5560 -3.9817 3.5978 16 7 0.2489 -5.9769 3.0457 17 6 -0.3173 -6.5873 4.2511 18 1 -0.2838 -5.8662 5.0677 19 6 -1.7681 -6.9750 3.9832 20 6 -2.4751 -7.3172 5.2979 21 16 -1.6919 -8.7971 6.0098 22 6 0.0635 -8.3369 5.9930 23 6 0.9832 -9.4136 6.5780 24 6 1.7668 -8.2664 7.2401 25 6 0.4708 -7.4400 7.1667 26 6 0.5112 -7.8135 4.6302 27 6 0.4790 -2.6840 1.3228 28 1 -0.4850 0.8401 0.0004 29 1 -0.2690 -1.8414 -1.1661 30 1 2.5074 -3.9808 -1.0175 31 1 3.1198 -3.4798 0.5941 32 1 0.7113 -5.2632 -0.0632 33 1 2.0178 -5.5577 1.1249 34 1 0.7505 -6.5194 2.4171 35 1 -2.2818 -6.1422 3.5030 36 1 -1.7943 -7.8434 3.3249 37 1 -2.3797 -6.4826 5.9926 38 1 -3.5296 -7.5146 5.1057 39 1 0.4868 -10.0723 7.2907 40 1 1.5550 -9.9561 5.8252 41 1 2.5713 -7.8724 6.6192 42 1 2.0864 -8.4872 8.2585 43 1 0.6314 -6.3990 6.8861 44 1 -0.1680 -7.5500 8.0430 45 1 0.3719 -8.5914 3.8795 46 1 1.5651 -7.5391 4.6755 47 1 0.9171 -2.0560 2.0984 48 1 -0.5691 -2.4201 1.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927280779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:57 Heat of formation + Delta-G solvation = -79.843089 kcal Electronic energy + Delta-G solvation = -28491.300251 eV Core-core repulsion = 24671.795512 eV Total energy + Delta-G solvation = -3819.504738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.52265 -40.43437 -39.19407 -37.18528 -36.10667 -34.17850 -33.85559 -31.66768 -30.67046 -29.57771 -27.36273 -26.79021 -26.16081 -24.58440 -24.24007 -22.10005 -21.40779 -21.13834 -19.80112 -19.30446 -18.95592 -17.84217 -17.63533 -17.05240 -16.76099 -16.25678 -16.17181 -15.93230 -15.74592 -15.33650 -14.83282 -14.78237 -14.67813 -14.66078 -14.00282 -13.96859 -13.69657 -13.57913 -13.48761 -13.33167 -13.30497 -12.88801 -12.66610 -12.55179 -12.49656 -12.31177 -12.26144 -12.17752 -12.07628 -11.62607 -11.49613 -11.32580 -11.20964 -11.08976 -10.65732 -10.60078 -10.30564 -10.26506 -9.44018 -8.67925 -8.28139 -6.43753 0.79423 1.39180 1.42821 1.49152 1.53393 1.58754 2.10665 2.36700 2.95702 2.98714 3.28937 3.54029 3.66185 3.73308 3.80470 3.83822 3.89146 3.94562 4.08782 4.16252 4.24177 4.25989 4.37511 4.47300 4.56412 4.59811 4.70531 4.72637 4.77473 4.81615 4.84761 4.94586 5.00128 5.02392 5.07833 5.10097 5.12658 5.17284 5.23942 5.36662 5.42994 5.48172 5.48266 5.75022 6.00231 6.14943 6.63230 7.03336 7.28275 7.37383 7.53790 8.78208 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021076 B = 0.002534 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.202291 B =11046.380550 C =11195.081992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.285 1.285 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.233 3.767 10 O -0.589 6.589 11 C -0.111 4.111 12 C 0.108 3.892 13 N -0.634 5.634 14 C 0.712 3.288 15 O -0.642 6.642 16 N -0.723 5.723 17 C 0.162 3.838 18 H 0.062 0.938 19 C -0.126 4.126 20 C -0.072 4.072 21 S -0.270 6.270 22 C -0.042 4.042 23 C -0.098 4.098 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.096 4.096 27 C 0.140 3.860 28 H 0.271 0.729 29 H 0.378 0.622 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.104 0.896 34 H 0.410 0.590 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.029 0.971 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.251 -20.697 10.305 23.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.177 4.177 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.211 1.211 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.398 6.398 11 C -0.148 4.148 12 C -0.014 4.014 13 N -0.370 5.370 14 C 0.414 3.586 15 O -0.525 6.525 16 N -0.379 5.379 17 C 0.057 3.943 18 H 0.080 0.920 19 C -0.167 4.167 20 C -0.221 4.221 21 S -0.039 6.039 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.167 4.167 25 C -0.175 4.175 26 C -0.135 4.135 27 C 0.015 3.985 28 H 0.080 0.920 29 H 0.229 0.771 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.247 0.753 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.077 0.923 44 H 0.110 0.890 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.048 0.952 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 2.419 -21.642 11.149 24.465 hybrid contribution 0.010 3.078 -0.591 3.135 sum 2.429 -18.564 10.558 21.494 Atomic orbital electron populations 1.69689 1.07164 1.28457 1.50496 1.25837 0.95807 1.02921 0.93135 0.85405 0.79185 0.78937 0.77506 1.18744 1.20281 1.21095 1.21896 0.94009 0.91342 1.52069 0.91318 1.19711 0.86391 0.93667 0.81026 1.86058 1.51466 1.53019 1.49262 1.22724 0.97081 0.93469 1.01566 1.22421 0.93832 0.95387 0.89772 1.47877 1.56194 1.11049 1.21888 1.15722 0.79499 0.82672 0.80726 1.90850 1.48688 1.63588 1.49327 1.44937 1.59811 1.06333 1.26820 1.20714 0.92424 0.94739 0.86425 0.91956 1.22064 0.95380 1.02076 0.97132 1.23335 1.02740 0.97605 0.98400 1.86785 1.06295 1.27432 1.83404 1.23969 0.91927 1.02108 0.97234 1.22727 0.95426 0.95409 1.00121 1.22861 0.95825 0.95715 1.02315 1.23254 0.98789 0.98185 0.97228 1.21688 1.00419 0.96054 0.95350 1.22363 0.98730 0.78810 0.98553 0.92004 0.77139 0.89136 0.89788 0.91176 0.87773 0.75286 0.92899 0.89283 0.90624 0.86862 0.88978 0.88880 0.89162 0.89653 0.92282 0.88979 0.88379 0.88564 0.95227 0.95832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.16 10.97 21.45 0.24 -49.92 16 2 C 0.02 1.23 5.28 84.66 0.45 1.67 16 3 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 7 C -0.55 -28.90 8.10 25.60 0.21 -28.69 16 8 H 0.07 3.47 7.76 -2.91 -0.02 3.45 16 9 C 0.23 11.17 0.86 -10.35 -0.01 11.16 16 10 O -0.59 -29.87 13.10 -148.98 -1.95 -31.82 16 11 C -0.11 -4.06 6.22 31.98 0.20 -3.86 16 12 C 0.11 3.34 6.57 86.85 0.57 3.91 16 13 N -0.63 -25.38 3.33 -829.66 -2.76 -28.15 16 14 C 0.71 27.80 8.38 179.05 1.50 29.30 16 15 O -0.64 -31.18 16.31 -3.97 -0.06 -31.25 16 16 N -0.72 -19.26 5.01 -458.94 -2.30 -21.56 16 17 C 0.16 3.82 2.18 44.76 0.10 3.92 16 18 H 0.06 1.85 6.33 -2.39 -0.02 1.83 16 19 C -0.13 -2.95 5.27 30.49 0.16 -2.78 16 20 C -0.07 -1.52 6.48 72.03 0.47 -1.05 16 21 S -0.27 -5.18 21.59 -56.49 -1.22 -6.40 16 22 C -0.04 -0.66 0.98 -10.75 -0.01 -0.67 16 23 C -0.10 -1.14 7.27 30.97 0.23 -0.91 16 24 C -0.13 -1.48 7.74 31.19 0.24 -1.24 16 25 C -0.13 -2.20 7.06 30.97 0.22 -1.98 16 26 C -0.10 -1.51 4.37 30.41 0.13 -1.38 16 27 C 0.14 6.96 5.54 86.73 0.48 7.44 16 28 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 29 H 0.38 20.30 6.98 -74.06 -0.52 19.78 16 30 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.08 2.93 8.02 -2.39 -0.02 2.92 16 32 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.10 2.25 7.30 -2.39 -0.02 2.23 16 34 H 0.41 8.19 7.08 -92.71 -0.66 7.54 16 35 H 0.05 1.57 8.06 -2.39 -0.02 1.55 16 36 H 0.09 1.81 8.06 -2.39 -0.02 1.79 16 37 H 0.08 1.75 8.12 -2.38 -0.02 1.73 16 38 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 39 H 0.09 1.09 8.09 -2.38 -0.02 1.07 16 40 H 0.09 0.84 8.10 -2.39 -0.02 0.82 16 41 H 0.09 0.97 7.66 -2.39 -0.02 0.95 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 1.17 7.14 -2.39 -0.02 1.15 16 44 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 45 H 0.10 1.29 8.09 -2.39 -0.02 1.27 16 46 H 0.10 1.34 7.38 -2.39 -0.02 1.32 16 47 H 0.03 1.63 7.81 -2.39 -0.02 1.61 16 48 H 0.02 1.32 8.07 -2.38 -0.02 1.30 16 Total: -1.00 -66.91 382.51 -1.31 -68.21 By element: Atomic # 1 Polarization: 42.23 SS G_CDS: -0.20 Total: 42.03 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 4.93 Total: 14.84 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -4.82 Total: -99.62 kcal Atomic # 8 Polarization: -61.05 SS G_CDS: -2.02 Total: -63.07 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -1.22 Total: -6.40 kcal Total: -66.91 -1.31 -68.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927280779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -66.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds