Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86797 * 119.99916 * 2 1 4 4 H 1.48502 * 109.47085 * 239.99647 * 3 2 1 5 5 H 1.48501 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47442 * 119.99780 * 3 2 1 7 7 C 1.38949 * 120.00111 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00099 * 200.01572 * 7 2 1 9 9 N 1.37092 * 120.00208 * 20.01094 * 7 2 1 10 10 C 1.34779 * 119.99817 * 49.54783 * 9 7 2 11 11 O 1.21294 * 119.99976 * 180.02562 * 10 9 7 12 12 C 1.50697 * 119.99871 * 0.02562 * 10 9 7 13 13 H 1.08998 * 115.58463 * 34.21044 * 12 10 9 14 14 C 1.53139 * 117.51318 * 248.42995 * 12 10 9 15 15 C 1.52340 * 117.51551 * 179.97438 * 12 10 9 16 16 C 1.50776 * 121.76193 * 356.35405 * 15 12 10 17 17 O 1.21291 * 126.62107 * 36.20814 * 16 15 12 18 18 N 1.34605 * 106.76345 * 216.46568 * 16 15 12 19 19 C 1.39617 * 112.21819 * 359.57093 * 18 16 15 20 20 C 1.39318 * 130.81403 * 180.15505 * 19 18 16 21 21 C 1.37926 * 120.18816 * 180.32324 * 20 19 18 22 22 C 1.38301 * 120.34733 * 0.02562 * 21 20 19 23 23 C 1.38369 * 119.83786 * 0.02562 * 22 21 20 24 24 C 1.37692 * 119.98249 * 359.95614 * 23 22 21 25 25 C 1.46500 * 120.00496 * 229.55128 * 9 7 2 26 26 C 1.54266 * 110.03440 * 62.25169 * 25 9 7 27 27 C 1.54960 * 104.16208 * 217.14294 * 26 25 9 28 28 C 1.54881 * 102.77943 * 37.88413 * 27 26 25 29 29 C 1.53876 * 110.02947 * 305.03616 * 25 9 7 30 30 H 0.97000 * 120.00631 * 354.87779 * 1 2 3 31 31 H 1.09001 * 117.51618 * 145.12695 * 14 12 10 32 32 H 1.08993 * 117.51782 * 359.97438 * 14 12 10 33 33 H 0.97006 * 123.89121 * 179.73979 * 18 16 15 34 34 H 1.08008 * 119.90371 * 0.35376 * 20 19 18 35 35 H 1.08001 * 119.82464 * 179.97438 * 21 20 19 36 36 H 1.08009 * 120.08295 * 179.97438 * 22 21 20 37 37 H 1.08001 * 120.01011 * 180.02562 * 23 22 21 38 38 H 1.09001 * 110.02139 * 183.64784 * 25 9 7 39 39 H 1.09005 * 110.48213 * 335.78940 * 26 25 9 40 40 H 1.08996 * 110.48771 * 98.42962 * 26 25 9 41 41 H 1.09007 * 110.71448 * 279.56934 * 27 26 25 42 42 H 1.09001 * 110.92315 * 156.29796 * 27 26 25 43 43 H 1.09000 * 110.48949 * 203.40848 * 28 27 26 44 44 H 1.09002 * 110.48592 * 80.76891 * 28 27 26 45 45 H 1.09004 * 110.03422 * 238.56663 * 29 25 9 46 46 H 1.08997 * 110.03189 * 359.97438 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0399 -1.2314 0.3207 9 7 1.3855 -2.3550 -0.4052 10 6 0.7063 -2.3794 -1.5691 11 8 0.1544 -3.3982 -1.9279 12 6 0.6325 -1.1410 -2.4246 13 1 1.5191 -0.5071 -2.4125 14 6 -0.7286 -0.4514 -2.5551 15 6 -0.1495 -1.2321 -3.7288 16 6 -0.7606 -2.5279 -4.1989 17 8 -1.2617 -3.3859 -3.5033 18 7 -0.6376 -2.5514 -5.5391 19 6 -0.0153 -1.4030 -6.0324 20 6 0.3001 -1.0269 -7.3362 21 6 0.9321 0.1750 -7.5777 22 6 1.2584 1.0159 -6.5293 23 6 0.9496 0.6496 -5.2312 24 6 0.3184 -0.5493 -4.9862 25 6 1.4576 -3.5590 0.4262 26 6 0.7907 -3.2985 1.7926 27 6 1.6739 -4.0769 2.8002 28 6 3.1028 -3.8560 2.2452 29 6 2.9271 -3.9138 0.7137 30 1 -0.4851 0.8366 0.0750 31 1 -0.7371 0.6361 -2.6290 32 1 -1.5704 -0.8938 -2.0226 33 1 -0.9480 -3.2809 -6.0981 34 1 0.0485 -1.6782 -8.1603 35 1 1.1743 0.4605 -8.5907 36 1 1.7536 1.9560 -6.7232 37 1 1.2027 1.3044 -4.4104 38 1 0.9645 -4.3904 -0.0775 39 1 0.7974 -2.2331 2.0234 40 1 -0.2285 -3.6848 1.7995 41 1 1.4183 -5.1366 2.7985 42 1 1.5802 -3.6602 3.8030 43 1 3.7701 -4.6491 2.5828 44 1 3.4836 -2.8809 2.5490 45 1 3.1468 -4.9177 0.3502 46 1 3.5865 -3.1904 0.2342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933241203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -7.439078 kcal Electronic energy + Delta-G solvation = -30792.723245 eV Core-core repulsion = 26840.914229 eV Total energy + Delta-G solvation = -3951.809016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.62288 -40.66371 -39.28867 -38.48365 -36.82082 -36.32280 -35.79596 -33.14616 -31.65606 -30.10225 -29.49644 -28.86340 -26.98843 -26.37524 -24.72628 -23.43792 -22.37930 -21.55980 -21.42966 -21.05859 -20.29522 -18.68728 -18.62410 -17.57594 -17.43659 -17.03981 -16.68152 -16.28005 -16.24889 -15.85552 -15.71828 -15.23087 -15.16900 -14.82682 -14.70539 -14.52293 -14.15168 -14.07802 -13.67708 -13.41049 -13.10470 -12.95934 -12.82839 -12.67226 -12.53863 -12.25410 -12.08925 -12.02051 -11.89150 -11.84804 -11.82796 -11.68040 -11.42601 -11.34278 -11.31018 -11.09053 -10.59506 -9.94609 -9.63666 -9.11840 -8.87905 -8.17611 -5.98086 0.22254 0.43611 1.48597 1.49056 1.53393 1.60081 2.03709 2.18435 2.38528 2.80427 2.93506 3.02806 3.31975 3.41698 3.49904 3.72830 3.85051 3.92182 4.06469 4.14670 4.20021 4.25662 4.48843 4.52929 4.60538 4.62847 4.64752 4.69581 4.74208 4.78239 4.80864 4.86624 4.90065 5.06030 5.10361 5.13984 5.16476 5.22591 5.26233 5.42702 5.50305 5.54409 5.59344 5.63452 5.64642 5.72816 5.95903 6.17074 6.19343 6.81945 7.11838 7.20794 7.78050 8.25340 8.87662 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.004556 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.542777 B = 6144.713535 C = 7402.004301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.029 3.971 3 Si 0.958 3.042 4 H -0.260 1.260 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.357 4.357 8 H 0.083 0.917 9 N -0.446 5.446 10 C 0.501 3.499 11 O -0.610 6.610 12 C -0.074 4.074 13 H 0.123 0.877 14 C -0.046 4.046 15 C -0.156 4.156 16 C 0.541 3.459 17 O -0.493 6.493 18 N -0.660 5.660 19 C 0.128 3.872 20 C -0.139 4.139 21 C -0.081 4.081 22 C -0.136 4.136 23 C -0.080 4.080 24 C -0.119 4.119 25 C 0.123 3.877 26 C -0.116 4.116 27 C -0.111 4.111 28 C -0.106 4.106 29 C -0.120 4.120 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.418 0.582 34 H 0.151 0.849 35 H 0.168 0.832 36 H 0.158 0.842 37 H 0.127 0.873 38 H 0.046 0.954 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.855 4.504 -10.112 12.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.178 4.178 3 Si 0.782 3.218 4 H -0.184 1.184 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.100 0.900 9 N -0.165 5.165 10 C 0.291 3.709 11 O -0.496 6.496 12 C -0.095 4.095 13 H 0.140 0.860 14 C -0.084 4.084 15 C -0.160 4.160 16 C 0.328 3.672 17 O -0.364 6.364 18 N -0.305 5.305 19 C 0.032 3.968 20 C -0.160 4.160 21 C -0.099 4.099 22 C -0.155 4.155 23 C -0.098 4.098 24 C -0.122 4.122 25 C 0.019 3.981 26 C -0.154 4.154 27 C -0.149 4.149 28 C -0.143 4.143 29 C -0.159 4.159 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.092 0.908 33 H 0.258 0.742 34 H 0.169 0.831 35 H 0.186 0.814 36 H 0.176 0.824 37 H 0.145 0.855 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.136 3.618 -9.785 11.222 hybrid contribution -0.347 0.145 0.313 0.489 sum 3.789 3.763 -9.472 10.873 Atomic orbital electron populations 1.70079 1.07323 1.28697 1.44387 1.26106 0.95547 1.01904 0.94258 0.85537 0.78562 0.78142 0.79571 1.18425 1.20523 1.19809 1.19236 0.95989 0.84191 1.49060 0.89976 1.43518 1.47395 1.10202 1.15423 1.19958 0.80738 0.88028 0.82174 1.90715 1.50139 1.34854 1.73942 1.21500 0.97898 0.98613 0.91511 0.85964 1.22235 0.95487 0.98235 0.92459 1.20587 1.07588 0.97245 0.90619 1.19641 0.78619 0.87071 0.81860 1.90834 1.43315 1.42803 1.59469 1.43516 1.58756 1.20697 1.07524 1.18537 0.96472 0.86598 0.95227 1.20702 1.03331 0.99551 0.92381 1.21300 0.95659 0.92040 1.00893 1.21387 1.01625 1.01596 0.90854 1.20507 0.96655 0.93745 0.98894 1.19141 1.04836 0.97176 0.91031 1.21722 0.96356 0.88478 0.91526 1.22478 0.97282 1.00831 0.94845 1.22415 0.94761 0.99753 0.97951 1.22215 0.96823 1.01966 0.93329 1.22328 0.95117 1.00492 0.97937 0.91745 0.86373 0.90800 0.74228 0.83087 0.81421 0.82394 0.85510 0.93581 0.92037 0.94797 0.90941 0.90463 0.89597 0.91879 0.91856 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.44 10.22 21.66 0.22 -43.22 16 2 C 0.03 1.34 3.43 84.93 0.29 1.63 16 3 Si 0.96 36.71 29.60 68.60 2.03 38.74 16 4 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 5 H -0.28 -10.57 7.11 99.48 0.71 -9.86 16 6 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.36 -17.53 7.00 84.04 0.59 -16.94 16 8 H 0.08 3.93 6.96 -2.91 -0.02 3.91 16 9 N -0.45 -23.05 2.41 -609.38 -1.47 -24.52 16 10 C 0.50 27.57 6.89 87.66 0.60 28.17 16 11 O -0.61 -37.35 11.71 21.01 0.25 -37.11 16 12 C -0.07 -3.51 3.74 -11.71 -0.04 -3.55 16 13 H 0.12 5.64 6.98 -2.39 -0.02 5.62 16 14 C -0.05 -2.01 7.87 30.44 0.24 -1.78 16 15 C -0.16 -6.66 2.42 -54.12 -0.13 -6.79 16 16 C 0.54 24.69 7.77 87.71 0.68 25.37 16 17 O -0.49 -27.12 14.48 21.02 0.30 -26.81 16 18 N -0.66 -22.68 5.90 -303.37 -1.79 -24.47 16 19 C 0.13 3.87 7.12 38.37 0.27 4.15 16 20 C -0.14 -2.90 10.07 22.46 0.23 -2.67 16 21 C -0.08 -1.35 10.02 22.21 0.22 -1.13 16 22 C -0.14 -2.62 10.06 22.32 0.22 -2.39 16 23 C -0.08 -2.15 10.03 22.17 0.22 -1.93 16 24 C -0.12 -4.02 6.12 -19.84 -0.12 -4.14 16 25 C 0.12 5.79 3.29 45.72 0.15 5.94 16 26 C -0.12 -5.02 6.43 31.69 0.20 -4.81 16 27 C -0.11 -3.58 6.91 31.91 0.22 -3.36 16 28 C -0.11 -3.29 6.83 31.67 0.22 -3.08 16 29 C -0.12 -4.60 6.22 31.32 0.19 -4.40 16 30 H 0.27 12.87 8.32 -92.71 -0.77 12.09 16 31 H 0.12 4.50 8.14 -2.39 -0.02 4.48 16 32 H 0.07 3.71 8.14 -2.39 -0.02 3.70 16 33 H 0.42 11.73 8.96 -92.70 -0.83 10.90 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 37 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 38 H 0.05 2.41 6.95 -2.39 -0.02 2.40 16 39 H 0.06 2.98 7.21 -2.38 -0.02 2.96 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.06 2.22 8.14 -2.38 -0.02 2.21 16 46 H 0.06 2.45 6.65 -2.39 -0.02 2.44 16 Total: -1.00 -71.95 367.22 3.99 -67.96 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: 0.18 Total: 41.12 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.26 Total: 8.30 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -3.03 Total: -92.21 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: 0.55 Total: -63.92 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -71.95 3.99 -67.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933241203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.522 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds