Wall clock time and date at job start Sat Apr 11 2020 06:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48501 * 109.46743 * 274.48675 * 3 2 1 5 5 H 1.48499 * 109.47124 * 34.48563 * 3 2 1 6 6 H 1.48501 * 109.47079 * 154.48798 * 3 2 1 7 7 C 1.38953 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 340.61748 * 7 2 1 9 9 N 1.37091 * 119.99704 * 160.89324 * 7 2 1 10 10 C 1.34775 * 120.00483 * 316.84594 * 9 7 2 11 11 O 1.21288 * 119.99948 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00108 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.56072 * 317.80799 * 12 10 9 14 14 C 1.53140 * 117.51207 * 172.05832 * 12 10 9 15 15 C 1.52339 * 59.82914 * 252.56354 * 14 12 10 16 16 C 1.50775 * 121.76532 * 248.92359 * 15 14 12 17 17 O 1.21290 * 126.62067 * 36.19869 * 16 15 14 18 18 N 1.34599 * 106.76529 * 216.19622 * 16 15 14 19 19 C 1.39618 * 112.21763 * 0.02562 * 18 16 15 20 20 C 1.39321 * 130.81108 * 179.97438 * 19 18 16 21 21 C 1.37933 * 120.18148 * 180.02562 * 20 19 18 22 22 C 1.38302 * 120.35142 * 0.02562 * 21 20 19 23 23 C 1.38370 * 119.83422 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.98563 * 359.97438 * 23 22 21 25 25 C 1.46507 * 119.99546 * 136.84464 * 9 7 2 26 26 C 1.54263 * 110.03016 * 62.56728 * 25 9 7 27 27 C 1.54893 * 104.19333 * 217.10395 * 26 25 9 28 28 C 1.54893 * 102.74890 * 37.93697 * 27 26 25 29 29 C 1.53870 * 110.03328 * 305.39403 * 25 9 7 30 30 H 0.96998 * 120.00377 * 0.02562 * 1 2 3 31 31 H 1.08999 * 117.52049 * 0.02562 * 14 12 10 32 32 H 1.09003 * 117.51203 * 145.12496 * 14 12 10 33 33 H 0.97005 * 123.89362 * 179.97438 * 18 16 15 34 34 H 1.07996 * 119.90629 * 0.02562 * 20 19 18 35 35 H 1.08007 * 119.82138 * 180.02562 * 21 20 19 36 36 H 1.08007 * 120.08148 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.00551 * 180.02562 * 23 22 21 38 38 H 1.09003 * 110.01162 * 184.00287 * 25 9 7 39 39 H 1.09000 * 110.48911 * 335.77255 * 26 25 9 40 40 H 1.08998 * 110.49420 * 98.42769 * 26 25 9 41 41 H 1.09001 * 110.75502 * 279.62852 * 27 26 25 42 42 H 1.08995 * 110.76186 * 156.25626 * 27 26 25 43 43 H 1.09003 * 110.48813 * 203.38002 * 28 27 26 44 44 H 1.09003 * 110.59541 * 80.79377 * 28 27 26 45 45 H 1.09001 * 110.03385 * 238.56890 * 29 25 9 46 46 H 1.08995 * 110.03368 * 0.02562 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4006 2.1012 -1.3958 5 1 1.4961 2.6235 0.7927 6 1 3.5898 1.4148 0.6030 7 6 2.0089 -1.2034 0.0005 8 1 1.5148 -2.1120 0.3114 9 7 3.3232 -1.2361 -0.3881 10 6 3.7226 -0.5436 -1.4731 11 8 2.9192 0.1083 -2.1060 12 6 5.1673 -0.5801 -1.9005 13 1 5.8981 -0.5096 -1.0949 14 6 5.5255 0.0707 -3.2397 15 6 5.5241 -1.4464 -3.1019 16 6 6.7995 -2.2490 -3.1504 17 8 7.8781 -1.9212 -2.7029 18 7 6.5103 -3.3996 -3.7861 19 6 5.1713 -3.4650 -4.1764 20 6 4.4665 -4.4609 -4.8490 21 6 3.1259 -4.2941 -5.1276 22 6 2.4707 -3.1384 -4.7429 23 6 3.1634 -2.1444 -4.0746 24 6 4.5014 -2.3077 -3.7937 25 6 4.2935 -2.0240 0.3762 26 6 3.9147 -3.5187 0.3292 27 6 4.2698 -4.0451 1.7419 28 6 3.8625 -2.8650 2.6588 29 6 4.2603 -1.6084 1.8573 30 1 -0.4850 0.8400 -0.0004 31 1 4.7163 0.5256 -3.8110 32 1 6.4922 0.5686 -3.3150 33 1 7.1576 -4.1022 -3.9544 34 1 4.9711 -5.3660 -5.1529 35 1 2.5850 -5.0701 -5.6489 36 1 1.4208 -3.0126 -4.9629 37 1 2.6544 -1.2410 -3.7726 38 1 5.2945 -1.8789 -0.0301 39 1 2.8485 -3.6361 0.1353 40 1 4.5008 -4.0372 -0.4295 41 1 5.3382 -4.2456 1.8222 42 1 3.6895 -4.9367 1.9792 43 1 4.4104 -2.9065 3.6001 44 1 2.7882 -2.8757 2.8430 45 1 5.2454 -1.2624 2.1702 46 1 3.5220 -0.8208 2.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933241205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:18 Heat of formation + Delta-G solvation = 11.268468 kcal Electronic energy + Delta-G solvation = -31473.548736 eV Core-core repulsion = 27522.550940 eV Total energy + Delta-G solvation = -3950.997796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.65257 -39.36444 -38.30534 -37.36722 -35.78070 -35.38358 -33.55509 -31.87655 -30.62423 -29.09398 -28.17770 -27.20472 -26.26046 -25.26297 -22.63154 -22.44956 -21.42823 -20.33365 -20.19645 -19.77974 -18.83061 -17.77767 -17.29017 -16.64026 -16.17988 -15.63275 -15.34506 -15.31068 -15.13480 -14.69283 -14.17084 -14.01194 -13.91005 -13.72806 -13.29555 -12.99264 -12.89436 -12.78044 -12.62767 -12.19067 -11.94056 -11.77557 -11.52418 -11.18956 -11.04755 -10.89497 -10.79867 -10.72489 -10.64303 -10.56847 -10.39874 -10.15878 -10.10085 -10.02779 -9.89771 -9.81005 -8.63581 -8.57158 -8.51758 -7.90812 -7.59131 -6.22297 -3.97136 1.21239 1.51406 2.36596 2.92901 3.24743 3.45657 3.59810 3.65471 3.90523 4.03082 4.28371 4.35755 4.53210 4.60458 4.68883 5.01629 5.04776 5.07501 5.13186 5.23767 5.25602 5.40471 5.42518 5.54461 5.63970 5.70045 5.71764 5.82972 5.87597 5.96482 6.07240 6.09961 6.14470 6.20134 6.22689 6.27932 6.33232 6.35601 6.50001 6.55218 6.71252 6.75429 6.78772 6.84868 6.86866 6.95240 7.18041 7.81966 7.97412 7.98375 8.76116 8.87457 9.40523 9.78509 10.83152 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.005783 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.436522 B = 4840.281352 C = 5378.452279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.095 3.905 3 Si 0.902 3.098 4 H -0.253 1.253 5 H -0.309 1.309 6 H -0.280 1.280 7 C -0.337 4.337 8 H 0.096 0.904 9 N -0.442 5.442 10 C 0.477 3.523 11 O -0.540 6.540 12 C -0.124 4.124 13 H 0.125 0.875 14 C -0.099 4.099 15 C -0.132 4.132 16 C 0.564 3.436 17 O -0.505 6.505 18 N -0.657 5.657 19 C 0.135 3.865 20 C -0.146 4.146 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.050 4.050 24 C -0.093 4.093 25 C 0.126 3.874 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.116 4.116 29 C -0.130 4.130 30 H 0.272 0.728 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.411 0.589 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.070 0.930 45 H 0.053 0.947 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.599 -8.303 -5.692 13.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.114 4.114 3 Si 0.732 3.268 4 H -0.178 1.178 5 H -0.238 1.238 6 H -0.205 1.205 7 C -0.462 4.462 8 H 0.114 0.886 9 N -0.161 5.161 10 C 0.266 3.734 11 O -0.424 6.424 12 C -0.145 4.145 13 H 0.143 0.857 14 C -0.136 4.136 15 C -0.136 4.136 16 C 0.352 3.648 17 O -0.380 6.380 18 N -0.299 5.299 19 C 0.038 3.962 20 C -0.167 4.167 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.068 4.068 24 C -0.096 4.096 25 C 0.021 3.979 26 C -0.164 4.164 27 C -0.160 4.160 28 C -0.154 4.154 29 C -0.169 4.169 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.249 0.751 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.168 0.832 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.072 0.928 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.599 -7.620 -5.684 13.510 hybrid contribution 0.849 0.209 0.111 0.881 sum 10.448 -7.411 -5.573 13.969 Atomic orbital electron populations 1.69743 1.06763 1.28097 1.45193 1.25258 0.94821 0.99095 0.92254 0.86526 0.79158 0.82592 0.78528 1.17840 1.23823 1.20515 1.18649 0.83378 0.95873 1.48330 0.88610 1.43698 1.08270 1.42449 1.21728 1.19071 0.87122 0.85215 0.82006 1.90497 1.53367 1.43561 1.54946 1.22370 0.98958 1.01250 0.91964 0.85720 1.22936 1.04136 0.88298 0.98253 1.20108 0.93836 0.94302 1.05325 1.19424 0.88243 0.81103 0.76000 1.90766 1.26480 1.73269 1.47515 1.43484 1.09880 1.20318 1.56264 1.18149 0.83363 0.96250 0.98408 1.20193 0.94691 0.98171 1.03681 1.20837 0.93274 0.97644 0.99105 1.21119 1.00236 0.93825 1.00172 1.20910 0.91619 1.00547 0.93701 1.18894 0.93997 0.94128 1.02600 1.21855 0.92152 0.91690 0.92181 1.22632 1.02853 0.94963 0.95955 1.22436 1.00052 0.97814 0.95649 1.22257 1.01485 0.94464 0.97192 1.22418 1.01069 0.99075 0.94294 0.91856 0.85946 0.87107 0.75073 0.86125 0.85575 0.85369 0.83160 0.91226 0.89849 0.92902 0.92311 0.92069 0.92659 0.91140 0.92819 0.89631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.96 55.50 0.77 -24.38 16 2 C 0.09 2.64 4.85 -17.47 -0.08 2.56 16 3 Si 0.90 23.22 24.84 -169.99 -4.22 19.00 16 4 H -0.25 -6.77 6.32 56.52 0.36 -6.41 16 5 H -0.31 -7.94 7.11 56.52 0.40 -7.53 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.34 -8.80 7.99 -14.93 -0.12 -8.92 16 8 H 0.10 2.66 7.07 -52.49 -0.37 2.29 16 9 N -0.44 -9.99 2.11 -106.54 -0.22 -10.22 16 10 C 0.48 10.67 4.35 -10.98 -0.05 10.62 16 11 O -0.54 -13.61 9.82 5.55 0.05 -13.56 16 12 C -0.12 -2.29 4.69 -92.03 -0.43 -2.72 16 13 H 0.13 2.18 6.98 -51.93 -0.36 1.81 16 14 C -0.10 -1.60 9.79 -27.00 -0.26 -1.86 16 15 C -0.13 -2.20 2.41 -157.52 -0.38 -2.58 16 16 C 0.56 8.95 8.47 -11.03 -0.09 8.85 16 17 O -0.51 -8.96 18.03 5.55 0.10 -8.86 16 18 N -0.66 -8.61 5.90 -9.79 -0.06 -8.67 16 19 C 0.13 1.90 7.12 -83.59 -0.59 1.30 16 20 C -0.15 -1.75 10.07 -39.29 -0.40 -2.15 16 21 C -0.09 -1.09 10.02 -39.67 -0.40 -1.49 16 22 C -0.13 -1.96 10.06 -39.51 -0.40 -2.36 16 23 C -0.05 -0.86 9.26 -39.73 -0.37 -1.23 16 24 C -0.09 -1.55 5.73 -104.58 -0.60 -2.15 16 25 C 0.13 2.37 3.20 -66.81 -0.21 2.16 16 26 C -0.13 -2.16 6.42 -25.07 -0.16 -2.32 16 27 C -0.12 -1.76 6.91 -24.73 -0.17 -1.93 16 28 C -0.12 -1.79 6.83 -25.07 -0.17 -1.97 16 29 C -0.13 -2.32 6.25 -25.62 -0.16 -2.48 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.12 2.04 7.70 -51.93 -0.40 1.64 16 32 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 33 H 0.41 4.12 8.96 -40.82 -0.37 3.75 16 34 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.15 3.06 5.72 -52.49 -0.30 2.76 16 38 H 0.07 1.24 5.63 -51.93 -0.29 0.95 16 39 H 0.08 1.63 6.63 -51.93 -0.34 1.29 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.09 1.77 7.16 -51.93 -0.37 1.40 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -31.48 364.93 -9.34 -40.83 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.22 Total: 9.02 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -5.05 Total: -8.65 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.49 Total: -43.27 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.15 Total: -22.42 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.22 Total: 19.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.48 -9.34 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933241205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.095 kcal (2) G-P(sol) polarization free energy of solvation -31.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds