Wall clock time and date at job start Sat Apr 11 2020 06:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86803 * 119.99747 * 2 1 4 4 H 1.48501 * 109.46743 * 274.48675 * 3 2 1 5 5 H 1.48499 * 109.47124 * 34.48563 * 3 2 1 6 6 H 1.48501 * 109.47079 * 154.48798 * 3 2 1 7 7 C 1.38953 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99512 * 340.61748 * 7 2 1 9 9 N 1.37091 * 119.99704 * 160.89324 * 7 2 1 10 10 C 1.34775 * 120.00483 * 316.84594 * 9 7 2 11 11 O 1.21288 * 119.99948 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00108 * 180.02562 * 10 9 7 13 13 H 1.09000 * 115.56072 * 317.80799 * 12 10 9 14 14 C 1.53140 * 117.51207 * 172.05832 * 12 10 9 15 15 C 1.52339 * 59.82914 * 252.56354 * 14 12 10 16 16 C 1.50775 * 121.76532 * 248.92359 * 15 14 12 17 17 O 1.21290 * 126.62067 * 36.19869 * 16 15 14 18 18 N 1.34599 * 106.76529 * 216.19622 * 16 15 14 19 19 C 1.39618 * 112.21763 * 0.02562 * 18 16 15 20 20 C 1.39321 * 130.81108 * 179.97438 * 19 18 16 21 21 C 1.37933 * 120.18148 * 180.02562 * 20 19 18 22 22 C 1.38302 * 120.35142 * 0.02562 * 21 20 19 23 23 C 1.38370 * 119.83422 * 359.97438 * 22 21 20 24 24 C 1.37685 * 119.98563 * 359.97438 * 23 22 21 25 25 C 1.46507 * 119.99546 * 136.84464 * 9 7 2 26 26 C 1.54263 * 110.03016 * 62.56728 * 25 9 7 27 27 C 1.54893 * 104.19333 * 217.10395 * 26 25 9 28 28 C 1.54893 * 102.74890 * 37.93697 * 27 26 25 29 29 C 1.53870 * 110.03328 * 305.39403 * 25 9 7 30 30 H 0.96998 * 120.00377 * 0.02562 * 1 2 3 31 31 H 1.08999 * 117.52049 * 0.02562 * 14 12 10 32 32 H 1.09003 * 117.51203 * 145.12496 * 14 12 10 33 33 H 0.97005 * 123.89362 * 179.97438 * 18 16 15 34 34 H 1.07996 * 119.90629 * 0.02562 * 20 19 18 35 35 H 1.08007 * 119.82138 * 180.02562 * 21 20 19 36 36 H 1.08007 * 120.08148 * 180.02562 * 22 21 20 37 37 H 1.07997 * 120.00551 * 180.02562 * 23 22 21 38 38 H 1.09003 * 110.01162 * 184.00287 * 25 9 7 39 39 H 1.09000 * 110.48911 * 335.77255 * 26 25 9 40 40 H 1.08998 * 110.49420 * 98.42769 * 26 25 9 41 41 H 1.09001 * 110.75502 * 279.62852 * 27 26 25 42 42 H 1.08995 * 110.76186 * 156.25626 * 27 26 25 43 43 H 1.09003 * 110.48813 * 203.38002 * 28 27 26 44 44 H 1.09003 * 110.59541 * 80.79377 * 28 27 26 45 45 H 1.09001 * 110.03385 * 238.56890 * 29 25 9 46 46 H 1.08995 * 110.03368 * 0.02562 * 29 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4006 2.1012 -1.3958 5 1 1.4961 2.6235 0.7927 6 1 3.5898 1.4148 0.6030 7 6 2.0089 -1.2034 0.0005 8 1 1.5148 -2.1120 0.3114 9 7 3.3232 -1.2361 -0.3881 10 6 3.7226 -0.5436 -1.4731 11 8 2.9192 0.1083 -2.1060 12 6 5.1673 -0.5801 -1.9005 13 1 5.8981 -0.5096 -1.0949 14 6 5.5255 0.0707 -3.2397 15 6 5.5241 -1.4464 -3.1019 16 6 6.7995 -2.2490 -3.1504 17 8 7.8781 -1.9212 -2.7029 18 7 6.5103 -3.3996 -3.7861 19 6 5.1713 -3.4650 -4.1764 20 6 4.4665 -4.4609 -4.8490 21 6 3.1259 -4.2941 -5.1276 22 6 2.4707 -3.1384 -4.7429 23 6 3.1634 -2.1444 -4.0746 24 6 4.5014 -2.3077 -3.7937 25 6 4.2935 -2.0240 0.3762 26 6 3.9147 -3.5187 0.3292 27 6 4.2698 -4.0451 1.7419 28 6 3.8625 -2.8650 2.6588 29 6 4.2603 -1.6084 1.8573 30 1 -0.4850 0.8400 -0.0004 31 1 4.7163 0.5256 -3.8110 32 1 6.4922 0.5686 -3.3150 33 1 7.1576 -4.1022 -3.9544 34 1 4.9711 -5.3660 -5.1529 35 1 2.5850 -5.0701 -5.6489 36 1 1.4208 -3.0126 -4.9629 37 1 2.6544 -1.2410 -3.7726 38 1 5.2945 -1.8789 -0.0301 39 1 2.8485 -3.6361 0.1353 40 1 4.5008 -4.0372 -0.4295 41 1 5.3382 -4.2456 1.8222 42 1 3.6895 -4.9367 1.9792 43 1 4.4104 -2.9065 3.6001 44 1 2.7882 -2.8757 2.8430 45 1 5.2454 -1.2624 2.1702 46 1 3.5220 -0.8208 2.0076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933241205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:15 Heat of formation + Delta-G solvation = -7.759793 kcal Electronic energy + Delta-G solvation = -31474.373864 eV Core-core repulsion = 27522.550940 eV Total energy + Delta-G solvation = -3951.822923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.89958 -41.01124 -39.49433 -38.84295 -37.20595 -36.59279 -35.35489 -33.87966 -31.76944 -30.22128 -29.54011 -28.78863 -27.80217 -26.70870 -24.33829 -23.58404 -22.58394 -21.76845 -21.57721 -21.11147 -20.54007 -19.15879 -18.61883 -18.08365 -17.69630 -17.17344 -16.86809 -16.67355 -16.41857 -16.13742 -15.56280 -15.49131 -15.33610 -15.19546 -14.91202 -14.60249 -14.26453 -14.11455 -14.03905 -13.84531 -13.38889 -13.19051 -13.03878 -12.75519 -12.48765 -12.37289 -12.28884 -12.09670 -11.93077 -11.87814 -11.87442 -11.86551 -11.60042 -11.45419 -11.36578 -11.22433 -10.71236 -10.40926 -9.72950 -9.49030 -9.03414 -8.38535 -6.10021 0.02515 0.38880 1.09835 1.25915 1.34861 1.48955 1.74949 1.96861 2.40804 2.47004 2.72660 2.95353 3.00198 3.10267 3.28109 3.37911 3.65362 3.75809 3.85489 3.89964 3.99773 4.10861 4.20438 4.35794 4.41798 4.48781 4.55660 4.58292 4.61013 4.64911 4.69300 4.71499 4.87052 4.87624 5.01951 5.09699 5.11679 5.15865 5.24047 5.35961 5.43017 5.46903 5.55537 5.55954 5.64941 5.74076 5.75024 5.93896 6.05810 6.78721 6.86971 6.93415 7.37705 7.89075 8.70877 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.005783 C = 0.005205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.436522 B = 4840.281352 C = 5378.452279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.052 3.948 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.309 1.309 6 H -0.267 1.267 7 C -0.316 4.316 8 H 0.070 0.930 9 N -0.455 5.455 10 C 0.480 3.520 11 O -0.574 6.574 12 C -0.141 4.141 13 H 0.140 0.860 14 C -0.090 4.090 15 C -0.125 4.125 16 C 0.569 3.431 17 O -0.522 6.522 18 N -0.637 5.637 19 C 0.134 3.866 20 C -0.129 4.129 21 C -0.078 4.078 22 C -0.146 4.146 23 C -0.079 4.079 24 C -0.121 4.121 25 C 0.120 3.880 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.113 4.113 29 C -0.133 4.133 30 H 0.270 0.730 31 H 0.109 0.891 32 H 0.139 0.861 33 H 0.431 0.569 34 H 0.165 0.835 35 H 0.166 0.834 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.054 -11.248 -6.372 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.152 4.152 3 Si 0.776 3.224 4 H -0.200 1.200 5 H -0.239 1.239 6 H -0.191 1.191 7 C -0.443 4.443 8 H 0.088 0.912 9 N -0.175 5.175 10 C 0.271 3.729 11 O -0.459 6.459 12 C -0.163 4.163 13 H 0.157 0.843 14 C -0.127 4.127 15 C -0.129 4.129 16 C 0.357 3.643 17 O -0.399 6.399 18 N -0.281 5.281 19 C 0.037 3.963 20 C -0.149 4.149 21 C -0.096 4.096 22 C -0.165 4.165 23 C -0.098 4.098 24 C -0.124 4.124 25 C 0.016 3.984 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.151 4.151 29 C -0.171 4.171 30 H 0.079 0.921 31 H 0.127 0.873 32 H 0.157 0.843 33 H 0.272 0.728 34 H 0.182 0.818 35 H 0.184 0.816 36 H 0.149 0.851 37 H 0.125 0.875 38 H 0.104 0.896 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.085 -10.605 -6.358 18.003 hybrid contribution -0.232 1.002 0.179 1.044 sum 12.853 -9.603 -6.179 17.193 Atomic orbital electron populations 1.69818 1.07810 1.28321 1.48606 1.25759 0.95193 1.01245 0.92996 0.85809 0.78966 0.80487 0.77173 1.19952 1.23861 1.19137 1.18411 0.85142 0.94361 1.46436 0.91250 1.43813 1.07720 1.43337 1.22634 1.19714 0.88694 0.83396 0.81121 1.90478 1.55006 1.44714 1.55666 1.22185 0.96119 1.04511 0.93442 0.84278 1.23023 1.04885 0.88814 0.96025 1.20191 0.94771 0.94688 1.03282 1.19142 0.87342 0.81606 0.76211 1.90766 1.26810 1.73778 1.48509 1.43217 1.09842 1.19907 1.55124 1.18277 0.83503 0.95871 0.98625 1.20689 0.94400 0.98622 1.01209 1.21263 0.93579 0.97018 0.97738 1.21298 1.00644 0.94427 1.00131 1.20682 0.92533 1.00278 0.96293 1.18937 0.93838 0.95651 1.03959 1.22125 0.91760 0.92046 0.92460 1.22556 1.00829 0.94136 0.98470 1.22414 1.01895 0.97572 0.92807 1.22239 1.00592 0.93746 0.98510 1.22444 1.01439 0.99199 0.94025 0.92051 0.87266 0.84347 0.72793 0.81775 0.81633 0.85073 0.87458 0.89622 0.93230 0.91817 0.89576 0.90689 0.89623 0.93362 0.90205 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.06 13.96 21.66 0.30 -55.76 16 2 C 0.05 3.06 4.85 84.93 0.41 3.47 16 3 Si 0.95 50.13 24.84 68.60 1.70 51.84 16 4 H -0.27 -15.21 6.32 99.48 0.63 -14.58 16 5 H -0.31 -16.15 7.11 99.48 0.71 -15.45 16 6 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.32 -17.44 7.99 84.04 0.67 -16.77 16 8 H 0.07 4.13 7.07 -2.91 -0.02 4.11 16 9 N -0.46 -21.16 2.11 -609.38 -1.29 -22.45 16 10 C 0.48 22.12 4.35 87.66 0.38 22.50 16 11 O -0.57 -30.49 9.82 -3.05 -0.03 -30.52 16 12 C -0.14 -5.16 4.69 -11.71 -0.05 -5.21 16 13 H 0.14 4.64 6.98 -2.39 -0.02 4.63 16 14 C -0.09 -2.88 9.79 30.42 0.30 -2.58 16 15 C -0.13 -4.05 2.41 -54.14 -0.13 -4.18 16 16 C 0.57 16.48 8.47 87.71 0.74 17.22 16 17 O -0.52 -16.96 18.03 -3.06 -0.06 -17.01 16 18 N -0.64 -14.32 5.90 -303.38 -1.79 -16.11 16 19 C 0.13 3.35 7.12 38.37 0.27 3.62 16 20 C -0.13 -2.49 10.07 22.46 0.23 -2.26 16 21 C -0.08 -1.61 10.02 22.21 0.22 -1.38 16 22 C -0.15 -4.20 10.06 22.32 0.22 -3.97 16 23 C -0.08 -2.85 9.26 22.17 0.21 -2.65 16 24 C -0.12 -3.94 5.73 -19.84 -0.11 -4.06 16 25 C 0.12 4.43 3.20 45.71 0.15 4.58 16 26 C -0.12 -4.05 6.42 31.67 0.20 -3.85 16 27 C -0.11 -2.84 6.91 31.89 0.22 -2.62 16 28 C -0.11 -3.30 6.83 31.67 0.22 -3.08 16 29 C -0.13 -4.60 6.25 31.32 0.20 -4.40 16 30 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.11 3.78 7.70 -2.39 -0.02 3.76 16 32 H 0.14 3.60 8.14 -2.39 -0.02 3.58 16 33 H 0.43 6.61 8.96 -92.70 -0.83 5.78 16 34 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.11 4.77 5.72 -2.91 -0.02 4.76 16 38 H 0.09 2.90 5.63 -2.39 -0.01 2.88 16 39 H 0.05 1.98 6.63 -2.39 -0.02 1.97 16 40 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.82 16 42 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 2.07 7.16 -2.39 -0.02 2.06 16 Total: -1.00 -74.09 364.93 3.30 -70.79 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.12 Total: 24.85 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.34 Total: -5.62 kcal Atomic # 7 Polarization: -91.55 SS G_CDS: -2.77 Total: -94.32 kcal Atomic # 8 Polarization: -47.44 SS G_CDS: -0.09 Total: -47.53 kcal Atomic # 14 Polarization: 50.13 SS G_CDS: 1.70 Total: 51.84 kcal Total: -74.09 3.30 -70.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933241205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.027 kcal (2) G-P(sol) polarization free energy of solvation -74.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds