Wall clock time and date at job start Sat Apr 11 2020 06:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 119.99997 * 2 1 4 4 H 1.48508 * 109.47187 * 239.99421 * 3 2 1 5 5 H 1.48502 * 109.47079 * 119.99784 * 3 2 1 6 6 H 1.48494 * 109.47495 * 359.97438 * 3 2 1 7 7 C 1.37882 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99746 * 173.33255 * 7 2 1 9 9 C 1.50696 * 119.99720 * 353.33619 * 7 2 1 10 10 C 1.53046 * 109.45898 * 208.51120 * 9 7 2 11 11 C 1.53183 * 109.31409 * 178.61607 * 10 9 7 12 12 N 1.46922 * 108.77797 * 54.63695 * 11 10 9 13 13 C 1.34773 * 120.63301 * 126.37040 * 12 11 10 14 14 O 1.21289 * 120.00344 * 180.02562 * 13 12 11 15 15 C 1.50702 * 120.00199 * 0.02562 * 13 12 11 16 16 H 1.08997 * 115.55816 * 325.75932 * 15 13 12 17 17 C 1.53140 * 117.51332 * 111.57281 * 15 13 12 18 18 C 1.52332 * 117.51829 * 180.02562 * 15 13 12 19 19 C 1.50779 * 121.75560 * 3.66461 * 18 15 13 20 20 O 1.21286 * 126.62162 * 323.71612 * 19 18 15 21 21 N 1.34604 * 106.76621 * 143.72962 * 19 18 15 22 22 C 1.39621 * 112.21627 * 0.02562 * 21 19 18 23 23 C 1.39321 * 130.80622 * 179.97438 * 22 21 19 24 24 C 1.37934 * 120.17968 * 180.02562 * 23 22 21 25 25 C 1.38303 * 120.35061 * 0.02562 * 24 23 22 26 26 C 1.38368 * 119.83352 * 359.97438 * 25 24 23 27 27 C 1.37685 * 119.98555 * 0.02562 * 26 25 24 28 28 C 1.46934 * 118.73809 * 306.39326 * 12 11 10 29 29 C 1.53047 * 109.46062 * 88.44944 * 9 7 2 30 30 H 0.97000 * 120.00276 * 174.56864 * 1 2 3 31 31 H 1.08993 * 109.46563 * 328.47100 * 9 7 2 32 32 H 1.09001 * 109.49615 * 298.57205 * 10 9 7 33 33 H 1.09006 * 109.49406 * 58.66374 * 10 9 7 34 34 H 1.09002 * 109.58944 * 294.85104 * 11 10 9 35 35 H 1.08997 * 109.59002 * 174.42515 * 11 10 9 36 36 H 1.09005 * 117.51384 * 214.88128 * 17 15 13 37 37 H 1.09000 * 117.51833 * 0.02562 * 17 15 13 38 38 H 0.96996 * 123.89548 * 180.02562 * 21 19 18 39 39 H 1.07992 * 119.91005 * 0.02562 * 23 22 21 40 40 H 1.08004 * 119.82149 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.08270 * 179.97438 * 25 24 23 42 42 H 1.08006 * 120.00907 * 179.97438 * 26 25 24 43 43 H 1.08998 * 109.58171 * 293.81934 * 28 12 11 44 44 H 1.09004 * 109.70199 * 173.46585 * 28 12 11 45 45 H 1.08997 * 109.49223 * 301.33239 * 29 9 7 46 46 H 1.08990 * 109.49661 * 61.39484 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 3.1028 1.6964 1.2125 6 1 1.2842 2.7464 -0.0006 7 6 2.0045 -1.1941 0.0005 8 1 3.0790 -1.1973 -0.1081 9 6 1.2586 -2.4946 0.1526 10 6 2.1698 -3.5306 0.8149 11 6 1.3975 -4.8406 0.9992 12 7 0.8557 -5.2573 -0.3014 13 6 1.1028 -6.4908 -0.7848 14 8 0.6502 -6.8226 -1.8601 15 6 1.9413 -7.4579 0.0105 16 1 2.7478 -7.0124 0.5929 17 6 1.2400 -8.6869 0.5961 18 6 2.1854 -8.8366 -0.5896 19 6 1.6840 -9.2042 -1.9633 20 8 0.6405 -8.8514 -2.4710 21 7 2.6177 -9.9997 -2.5174 22 6 3.7027 -10.2133 -1.6650 23 6 4.8655 -10.9602 -1.8408 24 6 5.8089 -11.0214 -0.8364 25 6 5.6091 -10.3433 0.3523 26 6 4.4569 -9.5992 0.5350 27 6 3.5129 -9.5357 -0.4653 28 6 0.0399 -4.3034 -1.0652 29 6 0.8275 -2.9994 -1.2265 30 1 -0.4850 -0.8363 -0.0795 31 1 0.3768 -2.3372 0.7736 32 1 3.0399 -3.7071 0.1824 33 1 2.4953 -3.1603 1.7870 34 1 0.5797 -4.6867 1.7033 35 1 2.0692 -5.6105 1.3788 36 1 1.5850 -9.0500 1.5642 37 1 0.1723 -8.7959 0.4056 38 1 2.5453 -10.3808 -3.4064 39 1 5.0286 -11.4928 -2.7660 40 1 6.7085 -11.6019 -0.9791 41 1 6.3504 -10.3946 1.1360 42 1 4.2978 -9.0689 1.4623 43 1 -0.8885 -4.1057 -0.5294 44 1 -0.1863 -4.7176 -2.0478 45 1 0.1976 -2.2510 -1.7072 46 1 1.7101 -3.1804 -1.8398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935317698.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:35 Heat of formation + Delta-G solvation = -1.208253 kcal Electronic energy + Delta-G solvation = -29543.231946 eV Core-core repulsion = 25591.693119 eV Total energy + Delta-G solvation = -3951.538827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93522 -39.76079 -38.46161 -37.20577 -36.09987 -35.56869 -33.72541 -31.26883 -30.93422 -30.46138 -29.44866 -26.46737 -25.78586 -24.32753 -22.83319 -22.75541 -22.18773 -21.74106 -20.56894 -19.60830 -18.42331 -17.96010 -17.62857 -16.85020 -16.29799 -16.04939 -15.65422 -15.39219 -15.05530 -14.61828 -14.28142 -14.18870 -14.08811 -13.74904 -13.71755 -13.41204 -13.16292 -12.91824 -12.74089 -12.45238 -12.30350 -12.22725 -11.82604 -11.57082 -11.27937 -11.18627 -10.97672 -10.82107 -10.79934 -10.68978 -10.48864 -10.23964 -10.11885 -9.72127 -9.39080 -9.17527 -9.06010 -8.64706 -8.38678 -8.20307 -7.99128 -6.36607 -4.08405 0.83017 0.99783 2.22497 2.76621 2.85099 3.22887 3.42946 3.43592 3.48919 3.62760 3.82052 3.99272 4.02279 4.18889 4.51897 4.55771 4.62292 4.70771 4.79423 4.98889 5.11333 5.13744 5.27058 5.30478 5.33868 5.40171 5.57907 5.62595 5.69151 5.82809 5.83851 5.91564 6.02371 6.06700 6.16748 6.21788 6.33845 6.36660 6.40307 6.65603 6.69606 6.78514 6.80899 6.94404 7.04602 7.42030 7.56789 7.81631 8.01764 8.21192 8.42832 8.55591 8.85774 9.63261 11.01411 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.002692 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.666656 B =10398.220671 C =11142.392656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.021 3.979 3 Si 1.064 2.936 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.594 4.594 8 H 0.047 0.953 9 C 0.032 3.968 10 C -0.118 4.118 11 C 0.104 3.896 12 N -0.597 5.597 13 C 0.524 3.476 14 O -0.512 6.512 15 C -0.133 4.133 16 H 0.138 0.862 17 C -0.098 4.098 18 C -0.119 4.119 19 C 0.553 3.447 20 O -0.436 6.436 21 N -0.668 5.668 22 C 0.158 3.842 23 C -0.146 4.146 24 C -0.084 4.084 25 C -0.145 4.145 26 C -0.063 4.063 27 C -0.108 4.108 28 C 0.110 3.890 29 C -0.121 4.121 30 H 0.271 0.729 31 H 0.033 0.967 32 H 0.051 0.949 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.065 0.935 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -23.874 3.018 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.184 4.184 3 Si 0.892 3.108 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.208 1.208 7 C -0.632 4.632 8 H 0.065 0.935 9 C 0.013 3.987 10 C -0.157 4.157 11 C -0.018 4.018 12 N -0.330 5.330 13 C 0.310 3.690 14 O -0.388 6.388 15 C -0.154 4.154 16 H 0.155 0.845 17 C -0.136 4.136 18 C -0.123 4.123 19 C 0.338 3.662 20 O -0.303 6.303 21 N -0.313 5.313 22 C 0.060 3.940 23 C -0.167 4.167 24 C -0.102 4.102 25 C -0.164 4.164 26 C -0.082 4.082 27 C -0.111 4.111 28 C -0.011 4.011 29 C -0.160 4.160 30 H 0.082 0.918 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.251 0.749 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.078 0.922 44 H 0.097 0.903 45 H 0.084 0.916 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.451 -22.083 2.258 23.753 hybrid contribution 0.499 -1.749 -0.550 1.900 sum 8.950 -23.832 1.707 25.515 Atomic orbital electron populations 1.70793 1.06885 1.30921 1.46083 1.25789 0.96487 1.02529 0.93551 0.83625 0.75000 0.75670 0.76500 1.21548 1.21465 1.20835 1.21919 0.94609 0.91745 1.54922 0.93461 1.18838 0.95201 0.93311 0.91369 1.21963 0.98795 0.93758 1.01160 1.21936 0.97846 0.97984 0.84074 1.48054 1.51597 1.12445 1.20894 1.19511 0.81132 0.82129 0.86259 1.90906 1.51260 1.75601 1.21005 1.22259 1.03001 0.88015 1.02161 0.84470 1.22966 0.98605 0.96834 0.95191 1.20065 0.95891 1.00649 0.95663 1.19178 0.83270 0.77645 0.86125 1.90922 1.21646 1.50302 1.67468 1.43696 1.19223 1.49809 1.18537 1.18208 0.89057 0.96652 0.90085 1.20349 0.92839 1.02536 1.01023 1.20876 0.98198 0.98335 0.92807 1.21019 0.97778 0.99363 0.98243 1.20273 0.92372 0.97801 0.97718 1.18987 0.95369 1.01584 0.95189 1.21795 0.93276 0.89907 0.96156 1.22146 0.98810 0.93542 1.01503 0.91830 0.94860 0.93039 0.91657 0.91741 0.91039 0.86231 0.86764 0.74920 0.85650 0.85259 0.85277 0.85431 0.92246 0.90300 0.91647 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.76 13.55 55.43 0.75 -26.00 16 2 C 0.02 0.58 5.45 -17.82 -0.10 0.48 16 3 Si 1.06 24.72 29.91 -169.99 -5.08 19.63 16 4 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.59 -16.04 8.30 -34.44 -0.29 -16.33 16 8 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 9 C 0.03 0.74 1.70 -91.73 -0.16 0.59 16 10 C -0.12 -2.28 5.34 -26.61 -0.14 -2.42 16 11 C 0.10 1.63 6.35 -3.72 -0.02 1.61 16 12 N -0.60 -10.59 2.97 -172.77 -0.51 -11.11 16 13 C 0.52 9.23 7.48 -10.99 -0.08 9.15 16 14 O -0.51 -10.90 11.78 -19.63 -0.23 -11.13 16 15 C -0.13 -1.73 5.01 -92.04 -0.46 -2.19 16 16 H 0.14 1.48 6.56 -51.93 -0.34 1.14 16 17 C -0.10 -1.03 9.99 -26.97 -0.27 -1.30 16 18 C -0.12 -1.50 2.42 -157.50 -0.38 -1.88 16 19 C 0.55 8.38 7.77 -11.02 -0.09 8.30 16 20 O -0.44 -8.37 14.48 -19.63 -0.28 -8.66 16 21 N -0.67 -7.78 5.90 -9.79 -0.06 -7.84 16 22 C 0.16 1.66 7.12 -83.60 -0.59 1.06 16 23 C -0.15 -1.17 10.07 -39.29 -0.40 -1.56 16 24 C -0.08 -0.57 10.02 -39.67 -0.40 -0.97 16 25 C -0.14 -1.01 10.06 -39.51 -0.40 -1.41 16 26 C -0.06 -0.52 10.03 -39.74 -0.40 -0.92 16 27 C -0.11 -1.16 6.12 -104.58 -0.64 -1.80 16 28 C 0.11 2.17 6.43 -3.71 -0.02 2.15 16 29 C -0.12 -2.72 5.24 -26.61 -0.14 -2.86 16 30 H 0.27 7.84 6.39 -40.82 -0.26 7.58 16 31 H 0.03 0.84 6.98 -51.93 -0.36 0.48 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.87 5.51 -51.93 -0.29 0.59 16 36 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.41 3.82 8.96 -40.82 -0.37 3.45 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.08 1.61 7.01 -51.93 -0.36 1.25 16 45 H 0.06 1.58 7.71 -51.93 -0.40 1.18 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 370.96 15.07 5.59 5.59 Total: -1.00 -34.88 370.96 -11.04 -45.92 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.24 Total: 3.89 kcal Atomic # 6 Polarization: -5.33 SS G_CDS: -4.97 Total: -10.30 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.18 Total: -44.95 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.52 Total: -19.79 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.08 Total: 19.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.88 -11.04 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935317698.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.713 kcal (2) G-P(sol) polarization free energy of solvation -34.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds