Wall clock time and date at job start Sat Apr 11 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47228 * 2 1 4 4 N 1.28434 * 125.18660 * 275.26793 * 3 2 1 5 5 C 1.30840 * 110.98574 * 180.31399 * 4 3 2 6 6 C 1.39816 * 107.87239 * 359.71127 * 5 4 3 7 7 Cl 1.73598 * 127.33642 * 179.97438 * 6 5 4 8 8 C 1.36749 * 125.18961 * 95.09243 * 3 2 1 9 9 C 1.47028 * 126.90724 * 359.96321 * 8 3 2 10 10 O 1.21641 * 120.00011 * 267.49813 * 9 8 3 11 11 N 1.34780 * 119.99832 * 87.48975 * 9 8 3 12 12 C 1.46496 * 119.99766 * 175.69247 * 11 9 8 13 13 H 1.08999 * 109.45913 * 324.75201 * 12 11 9 14 14 C 1.53040 * 109.46230 * 84.72370 * 12 11 9 15 15 C 1.53198 * 109.30964 * 58.65692 * 14 12 11 16 16 N 1.46919 * 108.77494 * 54.63229 * 15 14 12 17 17 C 1.36943 * 120.62941 * 126.37088 * 16 15 14 18 18 H 1.07999 * 120.00230 * 211.01086 * 17 16 15 19 19 C 1.38821 * 119.99553 * 31.00968 * 17 16 15 20 20 N 1.31614 * 120.00216 * 11.27262 * 19 17 16 21 21 Si 1.86803 * 119.99582 * 191.27114 * 19 17 16 22 22 H 1.48502 * 109.47070 * 60.00206 * 21 19 17 23 23 H 1.48497 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47233 * 300.00209 * 21 19 17 25 25 C 1.46918 * 118.74248 * 306.39108 * 16 15 14 26 26 C 1.53040 * 109.45952 * 204.79382 * 12 11 9 27 27 H 1.08996 * 109.49700 * 181.39329 * 26 12 11 28 28 C 1.53009 * 109.49841 * 61.29282 * 26 12 11 29 29 H 1.09006 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47606 * 300.00332 * 1 2 3 31 31 H 1.09002 * 109.47014 * 60.00423 * 1 2 3 32 32 H 1.08997 * 109.47312 * 239.99294 * 2 1 3 33 33 H 1.09002 * 109.46539 * 119.99338 * 2 1 3 34 34 H 1.07999 * 126.06647 * 179.68981 * 5 4 3 35 35 H 0.97001 * 119.99593 * 355.41443 * 11 9 8 36 36 H 1.09000 * 109.49810 * 178.60410 * 14 12 11 37 37 H 1.08997 * 109.49742 * 298.70536 * 14 12 11 38 38 H 1.09000 * 109.58527 * 174.42579 * 15 14 12 39 39 H 1.09000 * 109.58327 * 294.84381 * 15 14 12 40 40 H 0.96998 * 119.99922 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.58798 * 173.40171 * 25 16 15 42 42 H 1.08999 * 109.59021 * 293.82260 * 25 16 15 43 43 H 1.09004 * 109.46599 * 60.00079 * 28 26 12 44 44 H 1.08991 * 109.47240 * 180.02562 * 28 26 12 45 45 H 1.08999 * 109.46846 * 300.00223 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1742 2.1110 -1.0452 5 6 2.6311 3.2948 -0.7262 6 6 2.7799 3.3372 0.6633 7 17 3.3516 4.6675 1.6209 8 6 2.3746 2.0910 1.1132 9 6 2.3403 1.6238 2.5068 10 8 1.3537 1.8213 3.1904 11 7 3.4019 0.9764 3.0268 12 6 3.4061 0.5943 4.4410 13 1 2.8937 1.3587 5.0252 14 6 2.6847 -0.7449 4.6095 15 6 3.3872 -1.8090 3.7603 16 7 4.8104 -1.8402 4.1236 17 6 5.4106 -3.0144 4.4928 18 1 6.2262 -3.0047 5.2007 19 6 4.9707 -4.2171 3.9571 20 7 4.1372 -4.2182 2.9385 21 14 5.5619 -5.8341 4.6819 22 1 5.1642 -5.9110 6.1106 23 1 4.9499 -6.9636 3.9369 24 1 7.0409 -5.9133 4.5748 25 6 5.5774 -0.5877 4.0837 26 6 4.8505 0.4627 4.9294 27 1 4.8544 0.1543 5.9748 28 6 5.5612 1.8106 4.7911 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.8541 4.0969 -1.4142 35 1 4.1615 0.7600 2.4636 36 1 2.7091 -1.0418 5.6580 37 1 1.6496 -0.6441 4.2834 38 1 2.9394 -2.7840 3.9525 39 1 3.2850 -1.5595 2.7041 40 1 3.8301 -5.0586 2.5640 41 1 6.5748 -0.7570 4.4894 42 1 5.6539 -0.2387 3.0540 43 1 5.0419 2.5583 5.3906 44 1 6.5900 1.7162 5.1385 45 1 5.5580 2.1173 3.7451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000942080484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:02 Heat of formation + Delta-G solvation = 52.322056 kcal Electronic energy + Delta-G solvation = -28970.102109 eV Core-core repulsion = 25050.744432 eV Total energy + Delta-G solvation = -3919.357677 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.69822 -39.83106 -37.66202 -36.67239 -34.62956 -34.35974 -32.68729 -31.37288 -30.89487 -29.91745 -29.74943 -25.97059 -25.42992 -24.33501 -23.33218 -22.00261 -21.68831 -21.16008 -20.01130 -18.71222 -18.27836 -16.84591 -16.33561 -16.14002 -15.52655 -15.14408 -14.92735 -14.64197 -14.41344 -14.12383 -14.00575 -13.79123 -13.46134 -13.37536 -13.00374 -12.92986 -12.63864 -12.27914 -12.16625 -11.91888 -11.74273 -11.53300 -11.45955 -11.45163 -11.13859 -10.89122 -10.76985 -10.58657 -10.46090 -10.29836 -10.15857 -10.02160 -9.84744 -9.53470 -9.37826 -8.84464 -8.77097 -8.55565 -6.72271 -5.87849 -3.35431 1.42624 1.70547 2.30397 2.37876 2.80243 3.28343 3.32431 3.38110 3.39138 4.37918 4.40801 4.57534 4.78481 4.82663 5.07859 5.10462 5.14024 5.25868 5.26259 5.29829 5.43779 5.49950 5.52043 5.61711 5.80534 5.92655 5.93362 6.02272 6.06424 6.09446 6.20678 6.26091 6.39819 6.50002 6.52679 6.57578 6.66705 6.82295 6.84065 7.26015 7.56679 7.59177 7.70684 7.82026 8.19805 8.37817 9.12851 9.73902 10.30972 11.20100 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.003931 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.921692 B = 7121.941971 C = 8281.170940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.112 3.888 3 N -0.257 5.257 4 N -0.271 5.271 5 C 0.019 3.981 6 C -0.121 4.121 7 Cl -0.024 7.024 8 C -0.003 4.003 9 C 0.589 3.411 10 O -0.521 6.521 11 N -0.692 5.692 12 C 0.160 3.840 13 H 0.076 0.924 14 C -0.156 4.156 15 C 0.176 3.824 16 N -0.590 5.590 17 C -0.255 4.255 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.905 5.905 21 Si 0.905 3.095 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.151 3.849 26 C -0.118 4.118 27 H 0.084 0.916 28 C -0.143 4.143 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.193 0.807 35 H 0.404 0.596 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.014 0.986 40 H 0.254 0.746 41 H 0.058 0.942 42 H 0.013 0.987 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 13.123 -4.769 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.045 5.045 4 N -0.102 5.102 5 C -0.159 4.159 6 C -0.159 4.159 7 Cl 0.004 6.996 8 C -0.134 4.134 9 C 0.370 3.630 10 O -0.396 6.396 11 N -0.343 5.343 12 C 0.057 3.943 13 H 0.094 0.906 14 C -0.196 4.196 15 C 0.050 3.950 16 N -0.313 5.313 17 C -0.384 4.384 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.734 3.266 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.024 3.976 26 C -0.139 4.139 27 H 0.102 0.898 28 C -0.201 4.201 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.210 0.790 35 H 0.241 0.759 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.032 0.968 40 H 0.064 0.936 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.067 12.368 -5.172 14.009 hybrid contribution 0.931 -0.318 0.718 1.218 sum -3.136 12.050 -4.454 13.224 Atomic orbital electron populations 1.22160 0.92959 1.04023 1.03527 1.22230 0.96552 0.75543 1.06379 1.45830 1.44722 1.12338 1.01623 1.73217 1.19188 1.04103 1.13678 1.23472 1.03935 0.95776 0.92675 1.21191 1.11540 0.90531 0.92589 1.98344 1.87261 1.43205 1.70773 1.21395 1.08370 0.93457 0.90175 1.16809 0.83820 0.78403 0.83970 1.90839 1.32048 1.56251 1.60440 1.46122 1.19539 1.55987 1.12666 1.21020 0.96799 0.97014 0.79508 0.90610 1.22612 0.98835 0.95901 1.02301 1.20725 0.83656 0.97116 0.93460 1.44008 1.04928 1.03136 1.79195 1.19128 1.16360 0.83931 1.19016 0.91822 1.25119 0.99704 0.98374 0.95998 1.69947 1.35898 1.25612 1.23460 0.86344 0.78447 0.83174 0.78594 1.20954 1.21615 1.20856 1.20929 0.94718 0.86737 0.95186 1.21958 0.93947 0.96202 1.01815 0.89771 1.21777 1.00190 0.96630 1.01492 0.89527 0.91339 0.91442 0.87261 0.87355 0.79033 0.75945 0.91473 0.92616 0.89344 0.96837 0.93560 0.92336 0.96966 0.93170 0.92647 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 10.24 37.16 0.38 -1.43 16 2 C 0.11 1.35 6.91 -4.05 -0.03 1.32 16 3 N -0.26 -3.53 3.35 -57.11 -0.19 -3.72 16 4 N -0.27 -3.65 11.89 30.61 0.36 -3.29 16 5 C 0.02 0.23 12.04 -17.38 -0.21 0.02 16 6 C -0.12 -1.63 6.89 -38.88 -0.27 -1.90 16 7 Cl -0.02 -0.30 29.24 -51.86 -1.52 -1.82 16 8 C 0.00 -0.04 6.71 -82.00 -0.55 -0.60 16 9 C 0.59 9.51 6.87 -12.70 -0.09 9.43 16 10 O -0.52 -9.86 16.79 5.24 0.09 -9.77 16 11 N -0.69 -10.69 3.59 -54.97 -0.20 -10.88 16 12 C 0.16 2.60 2.18 -67.89 -0.15 2.45 16 13 H 0.08 1.24 7.65 -51.93 -0.40 0.85 16 14 C -0.16 -2.88 5.77 -26.61 -0.15 -3.03 16 15 C 0.18 3.85 5.00 -3.71 -0.02 3.83 16 16 N -0.59 -13.47 2.99 -172.32 -0.51 -13.99 16 17 C -0.25 -6.55 9.58 -15.05 -0.14 -6.70 16 18 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 19 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 20 N -0.90 -24.64 11.06 55.49 0.61 -24.03 16 21 Si 0.90 20.82 29.57 -169.99 -5.03 15.80 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.15 2.82 5.50 -3.72 -0.02 2.80 16 26 C -0.12 -1.84 2.67 -90.50 -0.24 -2.09 16 27 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 28 C -0.14 -1.85 9.05 37.16 0.34 -1.51 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.11 1.43 7.65 -51.93 -0.40 1.03 16 34 H 0.19 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.40 6.17 6.72 -40.82 -0.27 5.90 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.09 2.23 6.09 -51.93 -0.32 1.92 16 39 H 0.01 0.30 7.74 -51.93 -0.40 -0.10 16 40 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 41 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.01 0.23 6.64 -51.93 -0.34 -0.11 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.67 7.54 -51.93 -0.39 0.27 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -29.29 379.67 -8.61 -37.90 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.71 Total: 5.39 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.24 Total: 2.69 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.07 Total: -55.91 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.29 -8.61 -37.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942080484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.223 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds