Wall clock time and date at job start Sat Apr 11 2020 06:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46492 * 109.47228 * 2 1 4 4 N 1.28434 * 125.18660 * 275.26793 * 3 2 1 5 5 C 1.30840 * 110.98574 * 180.31399 * 4 3 2 6 6 C 1.39816 * 107.87239 * 359.71127 * 5 4 3 7 7 Cl 1.73598 * 127.33642 * 179.97438 * 6 5 4 8 8 C 1.36749 * 125.18961 * 95.09243 * 3 2 1 9 9 C 1.47028 * 126.90724 * 359.96321 * 8 3 2 10 10 O 1.21641 * 120.00011 * 267.49813 * 9 8 3 11 11 N 1.34780 * 119.99832 * 87.48975 * 9 8 3 12 12 C 1.46496 * 119.99766 * 175.69247 * 11 9 8 13 13 H 1.08999 * 109.45913 * 324.75201 * 12 11 9 14 14 C 1.53040 * 109.46230 * 84.72370 * 12 11 9 15 15 C 1.53198 * 109.30964 * 58.65692 * 14 12 11 16 16 N 1.46919 * 108.77494 * 54.63229 * 15 14 12 17 17 C 1.36943 * 120.62941 * 126.37088 * 16 15 14 18 18 H 1.07999 * 120.00230 * 211.01086 * 17 16 15 19 19 C 1.38821 * 119.99553 * 31.00968 * 17 16 15 20 20 N 1.31614 * 120.00216 * 11.27262 * 19 17 16 21 21 Si 1.86803 * 119.99582 * 191.27114 * 19 17 16 22 22 H 1.48502 * 109.47070 * 60.00206 * 21 19 17 23 23 H 1.48497 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47233 * 300.00209 * 21 19 17 25 25 C 1.46918 * 118.74248 * 306.39108 * 16 15 14 26 26 C 1.53040 * 109.45952 * 204.79382 * 12 11 9 27 27 H 1.08996 * 109.49700 * 181.39329 * 26 12 11 28 28 C 1.53009 * 109.49841 * 61.29282 * 26 12 11 29 29 H 1.09006 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47606 * 300.00332 * 1 2 3 31 31 H 1.09002 * 109.47014 * 60.00423 * 1 2 3 32 32 H 1.08997 * 109.47312 * 239.99294 * 2 1 3 33 33 H 1.09002 * 109.46539 * 119.99338 * 2 1 3 34 34 H 1.07999 * 126.06647 * 179.68981 * 5 4 3 35 35 H 0.97001 * 119.99593 * 355.41443 * 11 9 8 36 36 H 1.09000 * 109.49810 * 178.60410 * 14 12 11 37 37 H 1.08997 * 109.49742 * 298.70536 * 14 12 11 38 38 H 1.09000 * 109.58527 * 174.42579 * 15 14 12 39 39 H 1.09000 * 109.58327 * 294.84381 * 15 14 12 40 40 H 0.96998 * 119.99922 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.58798 * 173.40171 * 25 16 15 42 42 H 1.08999 * 109.59021 * 293.82260 * 25 16 15 43 43 H 1.09004 * 109.46599 * 60.00079 * 28 26 12 44 44 H 1.08991 * 109.47240 * 180.02562 * 28 26 12 45 45 H 1.08999 * 109.46846 * 300.00223 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1742 2.1110 -1.0452 5 6 2.6311 3.2948 -0.7262 6 6 2.7799 3.3372 0.6633 7 17 3.3516 4.6675 1.6209 8 6 2.3746 2.0910 1.1132 9 6 2.3403 1.6238 2.5068 10 8 1.3537 1.8213 3.1904 11 7 3.4019 0.9764 3.0268 12 6 3.4061 0.5943 4.4410 13 1 2.8937 1.3587 5.0252 14 6 2.6847 -0.7449 4.6095 15 6 3.3872 -1.8090 3.7603 16 7 4.8104 -1.8402 4.1236 17 6 5.4106 -3.0144 4.4928 18 1 6.2262 -3.0047 5.2007 19 6 4.9707 -4.2171 3.9571 20 7 4.1372 -4.2182 2.9385 21 14 5.5619 -5.8341 4.6819 22 1 5.1642 -5.9110 6.1106 23 1 4.9499 -6.9636 3.9369 24 1 7.0409 -5.9133 4.5748 25 6 5.5774 -0.5877 4.0837 26 6 4.8505 0.4627 4.9294 27 1 4.8544 0.1543 5.9748 28 6 5.5612 1.8106 4.7911 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 2.8541 4.0969 -1.4142 35 1 4.1615 0.7600 2.4636 36 1 2.7091 -1.0418 5.6580 37 1 1.6496 -0.6441 4.2834 38 1 2.9394 -2.7840 3.9525 39 1 3.2850 -1.5595 2.7041 40 1 3.8301 -5.0586 2.5640 41 1 6.5748 -0.7570 4.4894 42 1 5.6539 -0.2387 3.0540 43 1 5.0419 2.5583 5.3906 44 1 6.5900 1.7162 5.1385 45 1 5.5580 2.1173 3.7451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942080484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:00 Heat of formation + Delta-G solvation = 36.011392 kcal Electronic energy + Delta-G solvation = -28970.809393 eV Core-core repulsion = 25050.744432 eV Total energy + Delta-G solvation = -3920.064961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.73354 -41.19500 -39.12934 -37.67605 -36.02933 -35.59668 -34.10990 -32.90935 -32.36692 -31.21852 -30.83167 -27.38936 -27.13890 -25.37681 -24.58287 -23.51768 -22.81618 -22.64180 -21.16308 -20.18977 -19.42084 -18.65621 -17.50960 -17.24075 -16.86202 -16.62400 -16.37758 -15.91688 -15.74750 -15.47929 -15.33702 -15.08409 -14.78207 -14.68921 -14.37581 -14.23104 -13.93226 -13.54882 -13.17595 -13.14739 -12.91761 -12.89563 -12.77592 -12.69228 -12.55496 -12.41569 -12.36876 -12.23176 -11.95888 -11.69459 -11.59735 -11.51530 -11.37193 -11.11022 -10.52559 -10.42522 -10.15087 -9.87213 -8.59956 -7.85206 -5.34503 0.33366 0.65762 1.14352 1.40447 1.48565 1.50245 1.55898 1.68177 2.07323 2.51784 3.31412 3.35841 3.41097 3.68870 3.77480 3.85936 3.86462 4.04588 4.10845 4.13258 4.17405 4.28038 4.40575 4.58185 4.62064 4.66590 4.70441 4.76010 4.80030 4.96946 5.01969 5.04496 5.07907 5.12715 5.16022 5.30367 5.40492 5.45628 5.51579 5.54950 5.66441 5.75804 6.29217 6.42893 6.80474 6.91149 7.18208 7.87266 8.39091 9.19866 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013524 B = 0.003931 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.921692 B = 7121.941971 C = 8281.170940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -0.259 5.259 4 N -0.280 5.280 5 C 0.027 3.973 6 C -0.123 4.123 7 Cl -0.015 7.015 8 C -0.026 4.026 9 C 0.596 3.404 10 O -0.551 6.551 11 N -0.685 5.685 12 C 0.167 3.833 13 H 0.082 0.918 14 C -0.144 4.144 15 C 0.189 3.811 16 N -0.606 5.606 17 C -0.262 4.262 18 H 0.065 0.935 19 C -0.042 4.042 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.281 1.281 23 H -0.296 1.296 24 H -0.277 1.277 25 C 0.150 3.850 26 C -0.105 4.105 27 H 0.082 0.918 28 C -0.135 4.135 29 H 0.102 0.898 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.125 0.875 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.406 0.594 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.002 0.998 40 H 0.249 0.751 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 14.618 -4.986 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.011 4.011 3 N -0.048 5.048 4 N -0.110 5.110 5 C -0.150 4.150 6 C -0.161 4.161 7 Cl 0.013 6.987 8 C -0.157 4.157 9 C 0.379 3.621 10 O -0.428 6.428 11 N -0.335 5.335 12 C 0.063 3.937 13 H 0.100 0.900 14 C -0.184 4.184 15 C 0.064 3.936 16 N -0.329 5.329 17 C -0.393 4.393 18 H 0.083 0.917 19 C -0.238 4.238 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.207 1.207 23 H -0.222 1.222 24 H -0.203 1.203 25 C 0.024 3.976 26 C -0.126 4.126 27 H 0.101 0.899 28 C -0.193 4.193 29 H 0.121 0.879 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.109 0.891 34 H 0.244 0.756 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.081 0.919 44 H 0.087 0.913 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.242 13.886 -5.384 15.242 hybrid contribution 0.702 -0.737 0.771 1.277 sum -2.539 13.149 -4.613 14.165 Atomic orbital electron populations 1.22103 0.91977 1.04901 1.02806 1.22330 0.97343 0.75129 1.06266 1.45960 1.44771 1.12686 1.01386 1.73224 1.19557 1.04698 1.13557 1.24054 1.02442 0.95969 0.92570 1.21392 1.11124 0.90263 0.93346 1.98346 1.87083 1.42569 1.70683 1.21291 1.10152 0.94451 0.89766 1.16927 0.83172 0.77640 0.84408 1.90818 1.33044 1.57515 1.61462 1.46039 1.19520 1.55621 1.12359 1.20920 0.97084 0.95610 0.80128 0.89968 1.22428 0.98516 0.96203 1.01296 1.20426 0.83671 0.96165 0.93380 1.44199 1.05511 1.03856 1.79317 1.19431 1.16042 0.85188 1.18601 0.91736 1.25770 1.00368 1.01090 0.96606 1.70092 1.37185 1.25676 1.24708 0.85433 0.78053 0.79699 0.77750 1.20670 1.22239 1.20262 1.21065 0.94664 0.85776 0.96072 1.21807 0.93145 0.96805 1.00832 0.89920 1.21709 1.00710 0.94838 1.02016 0.87892 0.93307 0.90708 0.85699 0.89086 0.75636 0.75698 0.91662 0.92933 0.93106 0.97963 0.94202 0.92325 0.96456 0.91943 0.91287 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 10.24 71.98 0.74 -2.65 16 2 C 0.11 2.59 6.91 86.38 0.60 3.19 16 3 N -0.26 -6.95 3.35 -334.61 -1.12 -8.07 16 4 N -0.28 -7.08 11.89 -57.06 -0.68 -7.76 16 5 C 0.03 0.59 12.04 85.22 1.03 1.62 16 6 C -0.12 -3.12 6.89 22.73 0.16 -2.97 16 7 Cl -0.02 -0.35 29.24 -2.72 -0.08 -0.43 16 8 C -0.03 -0.74 6.71 40.76 0.27 -0.47 16 9 C 0.60 19.03 6.87 86.55 0.59 19.62 16 10 O -0.55 -20.81 16.79 -4.16 -0.07 -20.88 16 11 N -0.68 -20.72 3.59 -446.06 -1.60 -22.32 16 12 C 0.17 5.25 2.18 45.02 0.10 5.34 16 13 H 0.08 2.57 7.65 -2.39 -0.02 2.56 16 14 C -0.14 -5.35 5.77 30.67 0.18 -5.18 16 15 C 0.19 8.48 5.00 86.37 0.43 8.92 16 16 N -0.61 -27.79 2.99 -699.11 -2.09 -29.88 16 17 C -0.26 -13.56 9.58 84.03 0.81 -12.75 16 18 H 0.06 3.26 7.85 -2.91 -0.02 3.24 16 19 C -0.04 -2.25 5.04 84.87 0.43 -1.82 16 20 N -0.93 -51.92 11.06 21.65 0.24 -51.69 16 21 Si 0.96 43.16 29.57 68.60 2.03 45.19 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 25 C 0.15 5.45 5.50 86.36 0.48 5.92 16 26 C -0.11 -3.11 2.67 -10.71 -0.03 -3.13 16 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 28 C -0.13 -3.11 9.05 71.99 0.65 -2.46 16 29 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 2.49 7.65 -2.39 -0.02 2.47 16 34 H 0.23 3.11 8.06 -2.91 -0.02 3.08 16 35 H 0.41 12.11 6.72 -92.71 -0.62 11.49 16 36 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 38 H 0.05 2.67 6.09 -2.39 -0.01 2.65 16 39 H 0.00 0.11 7.74 -2.39 -0.02 0.09 16 40 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 41 H 0.06 2.12 7.93 -2.39 -0.02 2.10 16 42 H 0.02 0.63 6.64 -2.39 -0.02 0.61 16 43 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.24 7.54 -2.39 -0.02 1.22 16 Total: -1.00 -62.92 379.67 3.43 -59.48 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.38 Total: 23.17 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 6.42 Total: 13.18 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -5.25 Total: -119.71 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.07 Total: -20.88 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -0.08 Total: -0.43 kcal Total: -62.92 3.43 -59.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942080484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.496 kcal (2) G-P(sol) polarization free energy of solvation -62.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds