Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46685 * 2 1 4 4 N 1.28442 * 125.18194 * 275.04110 * 3 2 1 5 5 C 1.30838 * 110.97736 * 179.97438 * 4 3 2 6 6 C 1.39809 * 107.87476 * 0.02562 * 5 4 3 7 7 Cl 1.73608 * 127.33288 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18876 * 95.02009 * 3 2 1 9 9 C 1.47031 * 126.90424 * 359.75339 * 8 3 2 10 10 O 1.21649 * 119.99913 * 261.52162 * 9 8 3 11 11 N 1.34776 * 119.99962 * 81.52748 * 9 8 3 12 12 C 1.46498 * 120.00234 * 184.28354 * 11 9 8 13 13 H 1.09003 * 109.45705 * 324.97168 * 12 11 9 14 14 C 1.53038 * 109.46035 * 84.92370 * 12 11 9 15 15 C 1.53189 * 109.31269 * 181.38296 * 14 12 11 16 16 N 1.46925 * 108.78193 * 305.37287 * 15 14 12 17 17 C 1.36930 * 120.63105 * 233.58555 * 16 15 14 18 18 H 1.08001 * 120.00044 * 141.26598 * 17 16 15 19 19 C 1.38819 * 120.00266 * 321.27207 * 17 16 15 20 20 N 1.31616 * 119.99577 * 354.46517 * 19 17 16 21 21 Si 1.86799 * 120.00071 * 174.46890 * 19 17 16 22 22 H 1.48500 * 109.46958 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47198 * 119.99988 * 21 19 17 24 24 H 1.48506 * 109.46787 * 239.99543 * 21 19 17 25 25 C 1.46929 * 118.73728 * 53.60142 * 16 15 14 26 26 H 1.08999 * 109.58471 * 186.60839 * 25 16 15 27 27 C 1.53005 * 109.58489 * 66.18456 * 25 16 15 28 28 C 1.53038 * 109.46268 * 204.99907 * 12 11 9 29 29 H 1.09001 * 109.47334 * 300.00182 * 1 2 3 30 30 H 1.08999 * 109.47118 * 60.00219 * 1 2 3 31 31 H 1.09005 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47721 * 240.00112 * 2 1 3 33 33 H 1.09000 * 109.47415 * 119.99322 * 2 1 3 34 34 H 1.07995 * 126.05996 * 180.02562 * 5 4 3 35 35 H 0.97003 * 119.99846 * 4.27916 * 11 9 8 36 36 H 1.09001 * 109.50270 * 301.34379 * 14 12 11 37 37 H 1.09011 * 109.49482 * 61.43643 * 14 12 11 38 38 H 1.09000 * 109.58895 * 185.57859 * 15 14 12 39 39 H 1.09010 * 109.69943 * 65.22951 * 15 14 12 40 40 H 0.97001 * 120.00125 * 180.02562 * 20 19 17 41 41 H 1.09006 * 109.47057 * 300.70846 * 27 25 16 42 42 H 1.09001 * 109.46942 * 60.70881 * 27 25 16 43 43 H 1.08993 * 109.47062 * 180.70946 * 27 25 16 44 44 H 1.09004 * 109.49521 * 298.56646 * 28 12 11 45 45 H 1.08996 * 109.49719 * 58.65905 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1780 2.1098 -1.0457 5 6 2.6267 3.2965 -0.7259 6 6 2.7724 3.3399 0.6639 7 17 3.3326 4.6745 1.6226 8 6 2.3731 2.0917 1.1132 9 6 2.3331 1.6263 2.5074 10 8 1.3925 1.9211 3.2203 11 7 3.3387 0.8733 2.9956 12 6 3.2551 0.3313 4.3540 13 1 2.7432 1.0455 4.9991 14 6 2.4743 -0.9848 4.3307 15 6 2.3592 -1.5309 5.7573 16 7 3.7068 -1.6388 6.3327 17 6 4.1444 -2.8208 6.8678 18 1 5.1670 -3.1349 6.7195 19 6 3.2736 -3.6155 7.6007 20 7 2.0607 -3.1837 7.8741 21 14 3.8233 -5.2975 8.1991 22 1 5.2207 -5.5459 7.7624 23 1 3.7518 -5.3432 9.6816 24 1 2.9339 -6.3409 7.6283 25 6 4.5758 -0.4541 6.3234 26 1 5.5707 -0.7279 6.6747 27 6 3.9849 0.6227 7.2357 28 6 4.6662 0.0799 4.8904 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.8458 4.0999 -1.4135 35 1 4.1177 0.6901 2.4474 36 1 1.4773 -0.8093 3.9267 37 1 2.9986 -1.7078 3.7056 38 1 1.8915 -2.5152 5.7352 39 1 1.7566 -0.8535 6.3626 40 1 1.4523 -3.7388 8.3865 41 1 2.9878 0.8891 6.8848 42 1 3.9215 0.2408 8.2547 43 1 4.6243 1.5052 7.2176 44 1 5.1698 -0.6530 4.2601 45 1 5.2291 1.0132 4.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947342075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = 50.715663 kcal Electronic energy + Delta-G solvation = -28244.061540 eV Core-core repulsion = 24324.634204 eV Total energy + Delta-G solvation = -3919.427336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.86363 -39.71515 -37.75311 -36.77987 -34.84884 -34.59539 -32.60851 -31.41636 -30.63183 -30.07262 -29.42226 -26.95877 -24.78118 -24.32210 -23.40590 -22.06117 -21.87040 -21.29170 -20.14673 -18.79108 -17.99876 -16.91982 -16.53816 -16.22403 -15.78157 -15.45445 -14.93137 -14.59457 -14.47223 -14.21736 -13.89753 -13.80582 -13.54515 -13.18651 -13.14444 -12.67472 -12.57116 -12.45757 -12.24866 -12.06325 -11.88360 -11.67596 -11.41364 -11.10381 -10.97899 -10.92920 -10.72957 -10.69603 -10.43234 -10.29236 -10.19732 -9.97262 -9.84865 -9.55373 -9.43749 -8.98698 -8.85940 -8.50037 -6.56800 -5.84529 -3.40161 1.24457 1.55295 2.16036 2.24460 2.65442 3.10960 3.32197 3.40447 3.41816 4.15444 4.40644 4.42724 4.55793 4.65057 4.81909 4.96151 5.09049 5.21592 5.28235 5.31456 5.39176 5.41787 5.51620 5.71551 5.76439 5.90668 5.95853 6.00968 6.16051 6.27181 6.31974 6.34634 6.38889 6.52447 6.59149 6.69793 6.76602 6.93254 7.14728 7.29500 7.43900 7.62667 7.64378 7.76925 8.06691 8.48226 9.18904 9.76943 10.40174 11.23373 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003038 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.136610 B = 9214.923359 C =10224.553652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.114 3.886 3 N -0.261 5.261 4 N -0.272 5.272 5 C 0.021 3.979 6 C -0.118 4.118 7 Cl -0.020 7.020 8 C -0.005 4.005 9 C 0.587 3.413 10 O -0.510 6.510 11 N -0.709 5.709 12 C 0.148 3.852 13 H 0.090 0.910 14 C -0.148 4.148 15 C 0.179 3.821 16 N -0.584 5.584 17 C -0.260 4.260 18 H 0.061 0.939 19 C 0.015 3.985 20 N -0.897 5.897 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.289 1.289 25 C 0.171 3.829 26 H 0.067 0.933 27 C -0.162 4.162 28 C -0.133 4.133 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.104 0.896 34 H 0.194 0.806 35 H 0.398 0.602 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.024 0.976 40 H 0.254 0.746 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.036 0.964 44 H 0.063 0.937 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 10.015 -16.950 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.006 4.006 3 N -0.050 5.050 4 N -0.102 5.102 5 C -0.157 4.157 6 C -0.156 4.156 7 Cl 0.008 6.992 8 C -0.136 4.136 9 C 0.368 3.632 10 O -0.383 6.383 11 N -0.359 5.359 12 C 0.045 3.955 13 H 0.108 0.892 14 C -0.188 4.188 15 C 0.052 3.948 16 N -0.305 5.305 17 C -0.390 4.390 18 H 0.079 0.921 19 C -0.186 4.186 20 N -0.540 5.540 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.216 1.216 25 C 0.062 3.938 26 H 0.085 0.915 27 C -0.221 4.221 28 C -0.173 4.173 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.211 0.789 35 H 0.231 0.769 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.042 0.958 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.614 9.380 -17.125 19.536 hybrid contribution 0.798 -0.253 0.787 1.149 sum 1.413 9.126 -16.339 18.768 Atomic orbital electron populations 1.22185 0.92814 1.04095 1.03861 1.22178 0.96763 0.75830 1.05782 1.45796 1.45129 1.12372 1.01686 1.73221 1.19213 1.04218 1.13557 1.23499 1.03821 0.95641 0.92722 1.21245 1.11336 0.90388 0.92655 1.98360 1.87553 1.42680 1.70601 1.21445 1.08544 0.93515 0.90117 1.16863 0.83538 0.78750 0.84085 1.90890 1.33899 1.55245 1.58236 1.46379 1.20734 1.50946 1.17825 1.21250 0.97955 0.95966 0.80302 0.89161 1.22622 0.98357 0.95367 1.02482 1.20664 0.87097 1.00278 0.86723 1.44023 1.12569 1.06172 1.67757 1.19106 0.96994 0.96297 1.26641 0.92089 1.25388 0.96911 0.99453 0.96809 1.69960 1.06360 1.36618 1.41045 0.86256 0.78218 0.84023 0.78442 1.20153 1.21525 1.21593 1.20477 0.95238 0.87847 0.90193 0.91512 1.22288 1.00450 0.98016 1.01344 1.22319 0.94509 1.00310 1.00132 0.91191 0.91234 0.89523 0.87361 0.87794 0.78926 0.76854 0.93128 0.92578 0.90073 0.95785 0.93537 0.93238 0.92558 0.94511 0.91860 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 37.16 0.38 -1.09 16 2 C 0.11 1.01 6.91 -4.03 -0.03 0.98 16 3 N -0.26 -2.98 3.35 -57.10 -0.19 -3.17 16 4 N -0.27 -3.11 11.89 30.61 0.36 -2.75 16 5 C 0.02 0.22 12.04 -17.39 -0.21 0.01 16 6 C -0.12 -1.45 6.89 -38.88 -0.27 -1.71 16 7 Cl -0.02 -0.24 29.24 -51.86 -1.52 -1.76 16 8 C -0.01 -0.07 6.71 -82.00 -0.55 -0.62 16 9 C 0.59 8.74 6.88 -12.70 -0.09 8.66 16 10 O -0.51 -9.56 16.74 5.23 0.09 -9.47 16 11 N -0.71 -9.57 5.07 -54.97 -0.28 -9.84 16 12 C 0.15 2.40 2.24 -67.89 -0.15 2.25 16 13 H 0.09 1.68 5.88 -51.93 -0.31 1.37 16 14 C -0.15 -2.68 5.65 -26.61 -0.15 -2.83 16 15 C 0.18 4.06 4.79 -3.71 -0.02 4.04 16 16 N -0.58 -13.64 2.66 -164.77 -0.44 -14.08 16 17 C -0.26 -6.78 9.50 -15.06 -0.14 -6.92 16 18 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 19 C 0.01 0.39 5.12 -17.43 -0.09 0.30 16 20 N -0.90 -25.17 11.34 55.49 0.63 -24.54 16 21 Si 0.90 20.92 29.56 -169.99 -5.02 15.90 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.17 3.32 3.29 -67.60 -0.22 3.10 16 26 H 0.07 1.31 7.93 -51.93 -0.41 0.89 16 27 C -0.16 -3.05 9.02 37.16 0.34 -2.71 16 28 C -0.13 -2.10 5.02 -26.61 -0.13 -2.23 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 0.92 7.66 -51.93 -0.40 0.52 16 34 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.40 4.41 8.59 -40.82 -0.35 4.06 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.99 8.14 -51.92 -0.42 0.56 16 38 H 0.08 2.07 6.53 -51.93 -0.34 1.74 16 39 H 0.02 0.59 7.49 -51.92 -0.39 0.20 16 40 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.05 0.97 5.72 -51.93 -0.30 0.67 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -30.71 380.91 -8.65 -39.36 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.69 Total: 3.39 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -1.34 Total: 1.21 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.09 Total: -54.38 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.52 Total: -1.76 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.71 -8.65 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947342075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.077 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds