Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46508 * 109.46685 * 2 1 4 4 N 1.28442 * 125.18194 * 275.04110 * 3 2 1 5 5 C 1.30838 * 110.97736 * 179.97438 * 4 3 2 6 6 C 1.39809 * 107.87476 * 0.02562 * 5 4 3 7 7 Cl 1.73608 * 127.33288 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18876 * 95.02009 * 3 2 1 9 9 C 1.47031 * 126.90424 * 359.75339 * 8 3 2 10 10 O 1.21649 * 119.99913 * 261.52162 * 9 8 3 11 11 N 1.34776 * 119.99962 * 81.52748 * 9 8 3 12 12 C 1.46498 * 120.00234 * 184.28354 * 11 9 8 13 13 H 1.09003 * 109.45705 * 324.97168 * 12 11 9 14 14 C 1.53038 * 109.46035 * 84.92370 * 12 11 9 15 15 C 1.53189 * 109.31269 * 181.38296 * 14 12 11 16 16 N 1.46925 * 108.78193 * 305.37287 * 15 14 12 17 17 C 1.36930 * 120.63105 * 233.58555 * 16 15 14 18 18 H 1.08001 * 120.00044 * 141.26598 * 17 16 15 19 19 C 1.38819 * 120.00266 * 321.27207 * 17 16 15 20 20 N 1.31616 * 119.99577 * 354.46517 * 19 17 16 21 21 Si 1.86799 * 120.00071 * 174.46890 * 19 17 16 22 22 H 1.48500 * 109.46958 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47198 * 119.99988 * 21 19 17 24 24 H 1.48506 * 109.46787 * 239.99543 * 21 19 17 25 25 C 1.46929 * 118.73728 * 53.60142 * 16 15 14 26 26 H 1.08999 * 109.58471 * 186.60839 * 25 16 15 27 27 C 1.53005 * 109.58489 * 66.18456 * 25 16 15 28 28 C 1.53038 * 109.46268 * 204.99907 * 12 11 9 29 29 H 1.09001 * 109.47334 * 300.00182 * 1 2 3 30 30 H 1.08999 * 109.47118 * 60.00219 * 1 2 3 31 31 H 1.09005 * 109.46542 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47721 * 240.00112 * 2 1 3 33 33 H 1.09000 * 109.47415 * 119.99322 * 2 1 3 34 34 H 1.07995 * 126.05996 * 180.02562 * 5 4 3 35 35 H 0.97003 * 119.99846 * 4.27916 * 11 9 8 36 36 H 1.09001 * 109.50270 * 301.34379 * 14 12 11 37 37 H 1.09011 * 109.49482 * 61.43643 * 14 12 11 38 38 H 1.09000 * 109.58895 * 185.57859 * 15 14 12 39 39 H 1.09010 * 109.69943 * 65.22951 * 15 14 12 40 40 H 0.97001 * 120.00125 * 180.02562 * 20 19 17 41 41 H 1.09006 * 109.47057 * 300.70846 * 27 25 16 42 42 H 1.09001 * 109.46942 * 60.70881 * 27 25 16 43 43 H 1.08993 * 109.47062 * 180.70946 * 27 25 16 44 44 H 1.09004 * 109.49521 * 298.56646 * 28 12 11 45 45 H 1.08996 * 109.49719 * 58.65905 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.1780 2.1098 -1.0457 5 6 2.6267 3.2965 -0.7259 6 6 2.7724 3.3399 0.6639 7 17 3.3326 4.6745 1.6226 8 6 2.3731 2.0917 1.1132 9 6 2.3331 1.6263 2.5074 10 8 1.3925 1.9211 3.2203 11 7 3.3387 0.8733 2.9956 12 6 3.2551 0.3313 4.3540 13 1 2.7432 1.0455 4.9991 14 6 2.4743 -0.9848 4.3307 15 6 2.3592 -1.5309 5.7573 16 7 3.7068 -1.6388 6.3327 17 6 4.1444 -2.8208 6.8678 18 1 5.1670 -3.1349 6.7195 19 6 3.2736 -3.6155 7.6007 20 7 2.0607 -3.1837 7.8741 21 14 3.8233 -5.2975 8.1991 22 1 5.2207 -5.5459 7.7624 23 1 3.7518 -5.3432 9.6816 24 1 2.9339 -6.3409 7.6283 25 6 4.5758 -0.4541 6.3234 26 1 5.5707 -0.7279 6.6747 27 6 3.9849 0.6227 7.2357 28 6 4.6662 0.0799 4.8904 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.8934 -0.5137 0.8900 34 1 2.8458 4.0999 -1.4135 35 1 4.1177 0.6901 2.4474 36 1 1.4773 -0.8093 3.9267 37 1 2.9986 -1.7078 3.7056 38 1 1.8915 -2.5152 5.7352 39 1 1.7566 -0.8535 6.3626 40 1 1.4523 -3.7388 8.3865 41 1 2.9878 0.8891 6.8848 42 1 3.9215 0.2408 8.2547 43 1 4.6243 1.5052 7.2176 44 1 5.1698 -0.6530 4.2601 45 1 5.2291 1.0132 4.8848 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947342075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = 31.822611 kcal Electronic energy + Delta-G solvation = -28244.880804 eV Core-core repulsion = 24324.634204 eV Total energy + Delta-G solvation = -3920.246600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.74194 -41.01460 -39.27918 -37.68705 -36.11555 -35.58971 -34.34363 -32.74259 -32.09466 -31.00833 -30.81132 -28.53787 -26.31216 -25.36537 -24.62033 -23.66007 -22.94696 -22.54503 -21.24495 -20.13632 -19.33332 -18.51895 -17.74320 -17.28932 -16.92570 -16.59114 -16.44489 -15.85727 -15.63499 -15.50287 -15.32272 -15.06509 -14.79206 -14.54300 -14.27256 -14.15370 -13.93326 -13.87344 -13.16370 -13.07947 -12.90474 -12.89758 -12.79867 -12.74081 -12.57353 -12.39011 -12.29889 -12.12462 -11.95999 -11.81181 -11.61076 -11.54529 -11.41487 -11.02657 -10.56303 -10.42621 -10.16575 -9.88662 -8.50282 -7.85164 -5.43727 0.29402 0.65321 1.13653 1.39151 1.46783 1.49396 1.58905 1.65114 2.02356 2.51087 3.30882 3.35805 3.41812 3.65776 3.81886 3.86480 3.88121 4.04442 4.12927 4.17814 4.26755 4.28676 4.44710 4.52453 4.62091 4.70964 4.72010 4.74003 4.85396 4.86735 5.06177 5.07541 5.10842 5.11525 5.17569 5.33892 5.39677 5.44773 5.51663 5.54727 5.70356 5.77561 6.29484 6.48729 6.78649 6.93049 7.20743 7.86913 8.44661 9.20462 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017120 B = 0.003038 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.136610 B = 9214.923359 C =10224.553652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.106 3.894 3 N -0.258 5.258 4 N -0.276 5.276 5 C 0.027 3.973 6 C -0.125 4.125 7 Cl -0.020 7.020 8 C -0.024 4.024 9 C 0.594 3.406 10 O -0.553 6.553 11 N -0.692 5.692 12 C 0.160 3.840 13 H 0.068 0.932 14 C -0.132 4.132 15 C 0.190 3.810 16 N -0.598 5.598 17 C -0.263 4.263 18 H 0.066 0.934 19 C -0.040 4.040 20 N -0.932 5.932 21 Si 0.963 3.037 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.292 1.292 25 C 0.162 3.838 26 H 0.069 0.931 27 C -0.153 4.153 28 C -0.119 4.119 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.135 0.865 33 H 0.102 0.898 34 H 0.225 0.775 35 H 0.414 0.586 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.046 0.954 39 H -0.008 1.008 40 H 0.249 0.751 41 H 0.034 0.966 42 H 0.027 0.973 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.760 10.460 -19.338 22.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.012 4.012 3 N -0.047 5.047 4 N -0.106 5.106 5 C -0.150 4.150 6 C -0.163 4.163 7 Cl 0.008 6.992 8 C -0.155 4.155 9 C 0.377 3.623 10 O -0.429 6.429 11 N -0.343 5.343 12 C 0.056 3.944 13 H 0.086 0.914 14 C -0.172 4.172 15 C 0.063 3.937 16 N -0.321 5.321 17 C -0.394 4.394 18 H 0.084 0.916 19 C -0.236 4.236 20 N -0.577 5.577 21 Si 0.792 3.208 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.219 1.219 25 C 0.055 3.945 26 H 0.087 0.913 27 C -0.212 4.212 28 C -0.158 4.158 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.153 0.847 33 H 0.121 0.879 34 H 0.242 0.758 35 H 0.251 0.749 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.010 0.990 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.649 9.831 -19.557 22.049 hybrid contribution 0.183 -0.335 1.504 1.552 sum 2.833 9.495 -18.053 20.594 Atomic orbital electron populations 1.22153 0.92803 1.05017 1.02488 1.22445 0.96771 0.74959 1.07044 1.46029 1.44623 1.12951 1.01064 1.73242 1.19296 1.04651 1.13424 1.24016 1.02583 0.95994 0.92416 1.21449 1.11339 0.90050 0.93456 1.98360 1.87514 1.42586 1.70745 1.21177 1.10389 0.94417 0.89521 1.17032 0.82735 0.77926 0.84610 1.90876 1.35532 1.56897 1.59614 1.46060 1.21159 1.50220 1.16823 1.20876 0.97843 0.94232 0.81413 0.91409 1.22356 0.99012 0.96606 0.99221 1.20337 0.86583 0.97756 0.88989 1.44229 1.12866 1.06984 1.68022 1.19441 0.97015 0.97268 1.25672 0.91646 1.26094 0.97052 1.02896 0.97567 1.70131 1.07457 1.37786 1.42298 0.85272 0.78281 0.80028 0.77245 1.18686 1.22194 1.21885 1.20692 0.94379 0.86612 0.92769 0.91261 1.22180 1.00470 0.99154 0.99397 1.22152 0.94306 1.01942 0.97442 0.93964 0.91049 0.87520 0.84688 0.87924 0.75834 0.74865 0.93262 0.91411 0.93565 0.99010 0.94214 0.94645 0.95383 0.90973 0.90516 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.11 1.67 6.91 86.38 0.60 2.27 16 3 N -0.26 -5.36 3.35 -334.58 -1.12 -6.49 16 4 N -0.28 -5.60 11.89 -57.07 -0.68 -6.28 16 5 C 0.03 0.50 12.04 85.22 1.03 1.52 16 6 C -0.12 -2.80 6.89 22.72 0.16 -2.64 16 7 Cl -0.02 -0.45 29.24 -2.72 -0.08 -0.53 16 8 C -0.02 -0.59 6.71 40.76 0.27 -0.32 16 9 C 0.59 17.14 6.88 86.55 0.60 17.74 16 10 O -0.55 -20.89 16.74 -4.19 -0.07 -20.96 16 11 N -0.69 -17.35 5.07 -446.05 -2.26 -19.61 16 12 C 0.16 5.01 2.24 45.02 0.10 5.11 16 13 H 0.07 2.51 5.88 -2.39 -0.01 2.50 16 14 C -0.13 -4.76 5.65 30.67 0.17 -4.59 16 15 C 0.19 8.94 4.79 86.36 0.41 9.36 16 16 N -0.60 -28.24 2.66 -675.22 -1.79 -30.04 16 17 C -0.26 -13.78 9.50 84.04 0.80 -12.98 16 18 H 0.07 3.32 7.83 -2.91 -0.02 3.30 16 19 C -0.04 -2.15 5.12 84.86 0.43 -1.71 16 20 N -0.93 -54.33 11.34 21.65 0.25 -54.09 16 21 Si 0.96 43.58 29.56 68.60 2.03 45.60 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 C 0.16 6.15 3.29 44.97 0.15 6.30 16 26 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 27 C -0.15 -5.72 9.02 71.98 0.65 -5.07 16 28 C -0.12 -3.44 5.02 30.67 0.15 -3.29 16 29 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 1.64 7.66 -2.39 -0.02 1.62 16 34 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.41 7.91 8.59 -92.71 -0.80 7.11 16 36 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.05 2.48 6.53 -2.39 -0.02 2.46 16 39 H -0.01 -0.43 7.49 -2.38 -0.02 -0.45 16 40 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.03 1.40 5.72 -2.38 -0.01 1.39 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -68.87 380.91 2.74 -66.13 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.22 Total: 16.51 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.26 Total: 9.75 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.61 Total: -116.50 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.07 Total: -20.96 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.08 Total: -0.53 kcal Total: -68.87 2.74 -66.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947342075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.950 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds