Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46826 * 2 1 4 4 N 1.28428 * 125.18669 * 265.62058 * 3 2 1 5 5 C 1.30840 * 110.97910 * 180.26760 * 4 3 2 6 6 C 1.39801 * 107.87828 * 359.97438 * 5 4 3 7 7 Cl 1.73599 * 127.33979 * 180.02562 * 6 5 4 8 8 C 1.36747 * 125.18359 * 85.92637 * 3 2 1 9 9 C 1.47035 * 126.90540 * 359.75382 * 8 3 2 10 10 O 1.21643 * 119.99590 * 267.06493 * 9 8 3 11 11 N 1.34773 * 120.00021 * 87.06576 * 9 8 3 12 12 C 1.46494 * 120.00031 * 184.52712 * 11 9 8 13 13 H 1.08995 * 109.46066 * 34.99833 * 12 11 9 14 14 C 1.53042 * 109.46253 * 275.02667 * 12 11 9 15 15 C 1.53186 * 109.31831 * 178.61488 * 14 12 11 16 16 N 1.46924 * 108.77573 * 54.63475 * 15 14 12 17 17 C 1.36932 * 120.63426 * 126.37249 * 16 15 14 18 18 H 1.08002 * 120.00253 * 210.76126 * 17 16 15 19 19 C 1.38813 * 119.99925 * 30.75427 * 17 16 15 20 20 N 1.31624 * 119.99798 * 11.67187 * 19 17 16 21 21 Si 1.86803 * 120.00203 * 191.67465 * 19 17 16 22 22 H 1.48496 * 109.47277 * 90.00084 * 21 19 17 23 23 H 1.48504 * 109.46958 * 210.00291 * 21 19 17 24 24 H 1.48496 * 109.46845 * 329.99812 * 21 19 17 25 25 C 1.46929 * 118.73901 * 306.39669 * 16 15 14 26 26 H 1.09002 * 109.58852 * 173.53862 * 25 16 15 27 27 C 1.53004 * 109.58463 * 293.82097 * 25 16 15 28 28 C 1.53039 * 109.46202 * 154.97206 * 12 11 9 29 29 H 1.09008 * 109.46959 * 299.99158 * 1 2 3 30 30 H 1.08996 * 109.47714 * 59.99657 * 1 2 3 31 31 H 1.09000 * 109.46761 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46660 * 240.00693 * 2 1 3 33 33 H 1.09000 * 109.47067 * 120.00678 * 2 1 3 34 34 H 1.07997 * 126.06164 * 179.97438 * 5 4 3 35 35 H 0.97004 * 120.00109 * 4.53054 * 11 9 8 36 36 H 1.09005 * 109.49688 * 298.56914 * 14 12 11 37 37 H 1.08998 * 109.49588 * 58.66149 * 14 12 11 38 38 H 1.08997 * 109.59065 * 174.42056 * 15 14 12 39 39 H 1.09008 * 109.58525 * 294.70717 * 15 14 12 40 40 H 0.97005 * 119.99731 * 179.97438 * 20 19 17 41 41 H 1.08995 * 109.47694 * 59.99590 * 27 25 16 42 42 H 1.09000 * 109.47174 * 180.02562 * 27 25 16 43 43 H 1.09005 * 109.47047 * 299.99785 * 27 25 16 44 44 H 1.08999 * 109.50287 * 301.33865 * 28 12 11 45 45 H 1.09007 * 109.49540 * 61.43242 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3405 2.0523 -1.0465 5 6 2.7455 3.2544 -0.7259 6 6 2.6782 3.3731 0.6654 7 17 3.0972 4.7574 1.6256 8 6 2.2061 2.1506 1.1148 9 6 1.9569 1.7591 2.5100 10 8 0.8819 1.9991 3.0263 11 7 2.9195 1.1344 3.2168 12 6 2.6389 0.6558 4.5726 13 1 1.6066 0.3107 4.6296 14 6 2.8508 1.7969 5.5702 15 6 2.5232 1.3026 6.9826 16 7 3.3229 0.1019 7.2608 17 6 4.1094 0.0311 8.3794 18 1 5.0204 -0.5489 8.3632 19 6 3.7360 0.7048 9.5342 20 7 2.5281 1.2179 9.6353 21 14 4.9477 0.8833 10.9447 22 1 5.7327 2.1313 10.7680 23 1 4.2059 0.9428 12.2299 24 1 5.8674 -0.2824 10.9576 25 6 3.2631 -1.0213 6.3155 26 1 3.9928 -1.7789 6.6014 27 6 1.8593 -1.6299 6.3302 28 6 3.5825 -0.5007 4.9106 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.0736 4.0194 -1.4141 35 1 3.7981 1.0016 2.8277 36 1 3.8893 2.1258 5.5316 37 1 2.1953 2.6296 5.3150 38 1 2.7665 2.0796 7.7073 39 1 1.4623 1.0610 7.0483 40 1 2.2670 1.6884 10.4424 41 1 1.1317 -0.8723 6.0393 42 1 1.8172 -2.4631 5.6288 43 1 1.6292 -1.9882 7.3337 44 1 3.4480 -1.3038 4.1859 45 1 4.6141 -0.1500 4.8782 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947342077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = 34.081672 kcal Electronic energy + Delta-G solvation = -28229.858808 eV Core-core repulsion = 24309.710168 eV Total energy + Delta-G solvation = -3920.148640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -43.73882 -41.01376 -39.28886 -37.69766 -36.12240 -35.58330 -34.36096 -32.74594 -32.04983 -31.01722 -30.79051 -28.53603 -26.31410 -25.36350 -24.56633 -23.62786 -23.06062 -22.50652 -21.22964 -20.12340 -19.32461 -18.52663 -17.72995 -17.32727 -16.90972 -16.60212 -16.42860 -15.91722 -15.49667 -15.46725 -15.33468 -15.09963 -14.80433 -14.54622 -14.21519 -14.15611 -13.91712 -13.90077 -13.14746 -13.11549 -12.89848 -12.88186 -12.81027 -12.68348 -12.56339 -12.36304 -12.30714 -12.06680 -11.98845 -11.80584 -11.62573 -11.52790 -11.43485 -11.00921 -10.56264 -10.40667 -10.16236 -9.89491 -8.62544 -7.83734 -5.33516 0.30358 0.66593 1.13113 1.37710 1.47893 1.49155 1.57486 1.63335 2.05988 2.52207 3.31302 3.36683 3.43887 3.65208 3.82286 3.87739 3.89326 4.05112 4.13028 4.21257 4.26667 4.28884 4.44945 4.53459 4.63793 4.72320 4.72750 4.73225 4.85551 4.87100 5.07546 5.10099 5.10878 5.11480 5.18710 5.34850 5.40133 5.46889 5.52980 5.57562 5.69715 5.79430 6.30157 6.44573 6.78422 6.93506 7.18554 7.89334 8.41692 9.22124 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016675 B = 0.003088 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.708069 B = 9064.729742 C =10097.411430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.256 5.256 4 N -0.275 5.275 5 C 0.026 3.974 6 C -0.129 4.129 7 Cl -0.025 7.025 8 C -0.022 4.022 9 C 0.594 3.406 10 O -0.552 6.552 11 N -0.691 5.691 12 C 0.164 3.836 13 H 0.073 0.927 14 C -0.135 4.135 15 C 0.187 3.813 16 N -0.600 5.600 17 C -0.257 4.257 18 H 0.071 0.929 19 C -0.050 4.050 20 N -0.936 5.936 21 Si 0.965 3.035 22 H -0.288 1.288 23 H -0.299 1.299 24 H -0.265 1.265 25 C 0.161 3.839 26 H 0.071 0.929 27 C -0.153 4.153 28 C -0.118 4.118 29 H 0.040 0.960 30 H 0.065 0.935 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.224 0.776 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.043 0.957 38 H 0.051 0.949 39 H -0.007 1.007 40 H 0.247 0.753 41 H 0.035 0.965 42 H 0.078 0.922 43 H 0.027 0.973 44 H 0.098 0.902 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -2.757 -24.064 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.013 4.013 3 N -0.045 5.045 4 N -0.105 5.105 5 C -0.151 4.151 6 C -0.167 4.167 7 Cl 0.004 6.996 8 C -0.153 4.153 9 C 0.377 3.623 10 O -0.429 6.429 11 N -0.342 5.342 12 C 0.060 3.940 13 H 0.091 0.909 14 C -0.175 4.175 15 C 0.060 3.940 16 N -0.322 5.322 17 C -0.388 4.388 18 H 0.089 0.911 19 C -0.245 4.245 20 N -0.582 5.582 21 Si 0.793 3.207 22 H -0.215 1.215 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.054 3.946 26 H 0.089 0.911 27 C -0.212 4.212 28 C -0.157 4.157 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.155 0.845 33 H 0.129 0.871 34 H 0.240 0.760 35 H 0.251 0.749 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.011 0.989 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.046 0.954 44 H 0.116 0.884 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.718 -3.321 -24.375 24.611 hybrid contribution 0.596 1.341 2.049 2.520 sum 1.313 -1.980 -22.327 22.453 Atomic orbital electron populations 1.22180 0.93040 1.05135 1.02311 1.22502 0.96437 0.74808 1.07513 1.46066 1.44569 1.13042 1.00808 1.73243 1.17385 1.06499 1.13385 1.23981 1.03554 0.95279 0.92269 1.21493 1.11613 0.90056 0.93559 1.98372 1.91856 1.38739 1.70678 1.21135 1.10465 0.93989 0.89737 1.17018 0.84070 0.77500 0.83716 1.90877 1.26575 1.54034 1.71376 1.46064 1.15023 1.57123 1.15999 1.20877 1.00143 0.93972 0.79011 0.90870 1.22354 1.00667 0.97644 0.96862 1.20387 0.91874 0.89644 0.92065 1.44330 1.51842 1.12276 1.23778 1.19524 1.00982 1.29019 0.89227 0.91112 1.25880 0.97102 1.01940 0.99608 1.70161 1.18795 1.41433 1.27859 0.85304 0.78477 0.78189 0.78687 1.21504 1.22589 1.18964 1.20720 0.95653 0.89454 0.88807 0.91069 1.22188 0.98534 1.00110 1.00392 1.22161 0.98879 0.96834 0.97861 0.94041 0.91615 0.87074 0.84455 0.87148 0.75992 0.74889 0.92358 0.93852 0.93013 0.98883 0.94356 0.94583 0.90344 0.95413 0.88358 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.11 1.36 6.80 86.38 0.59 1.95 16 3 N -0.26 -5.04 3.35 -334.57 -1.12 -6.16 16 4 N -0.27 -5.44 11.89 -57.07 -0.68 -6.12 16 5 C 0.03 0.49 12.04 85.22 1.03 1.52 16 6 C -0.13 -3.01 6.89 22.72 0.16 -2.85 16 7 Cl -0.02 -0.61 29.24 -2.72 -0.08 -0.68 16 8 C -0.02 -0.54 6.72 40.76 0.27 -0.27 16 9 C 0.59 17.06 7.03 86.55 0.61 17.67 16 10 O -0.55 -20.75 16.79 -4.17 -0.07 -20.82 16 11 N -0.69 -17.37 5.07 -446.07 -2.26 -19.63 16 12 C 0.16 5.11 2.17 45.02 0.10 5.20 16 13 H 0.07 2.57 5.99 -2.39 -0.01 2.56 16 14 C -0.14 -5.31 5.65 30.67 0.17 -5.14 16 15 C 0.19 9.15 4.84 86.36 0.42 9.57 16 16 N -0.60 -28.63 2.69 -675.22 -1.82 -30.45 16 17 C -0.26 -13.64 9.58 84.03 0.81 -12.83 16 18 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 19 C -0.05 -2.76 5.03 84.86 0.43 -2.33 16 20 N -0.94 -55.66 11.06 21.65 0.24 -55.43 16 21 Si 0.96 44.58 29.57 68.60 2.03 46.61 16 22 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.16 5.90 3.29 44.98 0.15 6.04 16 26 H 0.07 2.56 7.93 -2.39 -0.02 2.54 16 27 C -0.15 -5.38 9.03 71.98 0.65 -4.73 16 28 C -0.12 -3.27 5.02 30.67 0.15 -3.11 16 29 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.22 7.91 -2.39 -0.02 1.20 16 34 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.41 8.00 8.59 -92.71 -0.80 7.20 16 36 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 37 H 0.04 1.79 8.11 -2.39 -0.02 1.77 16 38 H 0.05 2.92 6.09 -2.39 -0.01 2.91 16 39 H -0.01 -0.37 7.51 -2.38 -0.02 -0.39 16 40 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.04 1.35 5.73 -2.39 -0.01 1.33 16 42 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -71.18 380.68 2.71 -68.46 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: 0.22 Total: 15.13 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 6.26 Total: 9.08 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -5.64 Total: -117.79 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.07 Total: -20.82 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -71.18 2.71 -68.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947342077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.546 kcal (2) G-P(sol) polarization free energy of solvation -71.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds