Wall clock time and date at job start Sat Apr 11 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34777 * 120.00131 * 2 1 4 4 O 1.21642 * 120.00142 * 184.89683 * 3 2 1 5 5 C 1.47032 * 119.99985 * 4.89482 * 3 2 1 6 6 C 1.38541 * 126.90900 * 264.91878 * 5 3 2 7 7 Cl 1.73608 * 127.33516 * 0.02592 * 6 5 3 8 8 C 1.39798 * 105.33101 * 180.02562 * 6 5 3 9 9 N 1.30838 * 107.87564 * 0.02562 * 8 6 5 10 10 N 1.28436 * 110.98248 * 359.97438 * 9 8 6 11 11 C 1.46493 * 125.18911 * 179.97438 * 10 9 8 12 12 C 1.46500 * 119.99859 * 180.02562 * 2 1 3 13 13 H 1.09006 * 109.19950 * 179.97438 * 12 2 1 14 14 C 1.50121 * 109.20979 * 299.35705 * 12 2 1 15 15 C 1.52528 * 105.41518 * 218.02588 * 14 12 2 16 16 C 1.46238 * 114.27929 * 270.59368 * 15 14 12 17 17 N 1.50167 * 107.53046 * 58.40682 * 16 15 14 18 18 C 1.36946 * 120.53340 * 109.56780 * 17 16 15 19 19 H 1.07995 * 119.99977 * 326.50146 * 18 17 16 20 20 C 1.38812 * 119.99841 * 146.50523 * 18 17 16 21 21 N 1.31617 * 119.99939 * 153.98020 * 20 18 17 22 22 Si 1.86803 * 119.99986 * 333.97956 * 20 18 17 23 23 H 1.48496 * 109.47110 * 95.32083 * 22 20 18 24 24 H 1.48505 * 109.46986 * 215.32045 * 22 20 18 25 25 H 1.48498 * 109.47197 * 335.31984 * 22 20 18 26 26 C 1.43435 * 118.92937 * 289.58935 * 17 16 15 27 27 C 1.54844 * 109.20890 * 60.64058 * 12 2 1 28 28 H 1.09000 * 109.47166 * 85.04505 * 1 2 3 29 29 H 1.08997 * 109.47307 * 205.05170 * 1 2 3 30 30 H 1.09001 * 109.46719 * 325.05095 * 1 2 3 31 31 H 1.08001 * 126.06946 * 180.25960 * 8 6 5 32 32 H 1.09003 * 109.47411 * 85.66917 * 11 10 9 33 33 H 1.09005 * 109.47231 * 205.66306 * 11 10 9 34 34 H 1.08999 * 109.47625 * 325.66587 * 11 10 9 35 35 H 1.09004 * 110.24788 * 336.99990 * 14 12 2 36 36 H 1.08998 * 110.24645 * 99.05457 * 14 12 2 37 37 H 1.08993 * 108.52426 * 31.84011 * 15 14 12 38 38 H 1.09001 * 108.51832 * 149.35825 * 15 14 12 39 39 H 1.08994 * 109.84947 * 177.91822 * 16 15 14 40 40 H 1.09006 * 109.84355 * 298.83849 * 16 15 14 41 41 H 0.97001 * 120.00139 * 179.97438 * 21 20 18 42 42 H 1.08999 * 108.15643 * 213.28407 * 26 17 16 43 43 H 1.08996 * 108.15572 * 330.06011 * 26 17 16 44 44 H 1.09003 * 109.35689 * 320.99488 * 27 12 2 45 45 H 1.09006 * 109.36096 * 80.57813 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3520 1.1691 -0.0899 5 6 1.4078 2.4382 0.1086 6 6 0.9974 3.2537 -0.9334 7 17 1.2362 2.9910 -2.6328 8 6 0.3500 4.3331 -0.3252 9 7 0.3889 4.1471 0.9693 10 7 0.9971 3.0535 1.2588 11 6 1.2181 2.5437 2.6142 12 6 2.1975 -1.2687 -0.0006 13 1 3.2682 -1.0645 -0.0009 14 6 1.8425 -2.0445 1.2347 15 6 3.1391 -2.7132 1.6800 16 6 3.3667 -4.0337 1.0941 17 7 3.3779 -3.8704 -0.3986 18 6 4.5436 -4.0056 -1.1045 19 1 5.4804 -3.6980 -0.6640 20 6 4.5210 -4.5379 -2.3863 21 7 5.4651 -4.2216 -3.2470 22 14 3.1505 -5.7032 -2.8897 23 1 2.0790 -4.9393 -3.5778 24 1 3.6916 -6.7355 -3.8100 25 1 2.5915 -6.3612 -1.6815 26 6 2.1481 -3.5701 -1.0730 27 6 1.8313 -2.0678 -1.2753 28 1 -0.3633 0.0888 -1.0238 29 1 -0.3634 -0.9309 0.4351 30 1 -0.3633 0.8424 0.5887 31 1 -0.1053 5.1701 -0.8337 32 1 0.3467 1.9722 2.9340 33 1 2.0974 1.8996 2.6213 34 1 1.3745 3.3796 3.2960 35 1 1.4790 -1.3716 2.0113 36 1 1.0895 -2.7980 1.0035 37 1 3.9732 -2.0660 1.4094 38 1 3.1215 -2.8143 2.7651 39 1 4.3257 -4.4275 1.4305 40 1 2.5650 -4.7117 1.3871 41 1 5.4496 -4.5938 -4.1426 42 1 2.1726 -4.0474 -2.0527 43 1 1.3312 -4.0121 -0.5026 44 1 0.7684 -1.9472 -1.4845 45 1 2.4086 -1.6879 -2.1183 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948377189.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:39 Heat of formation + Delta-G solvation = 64.228897 kcal Electronic energy + Delta-G solvation = -28911.562084 eV Core-core repulsion = 24992.720726 eV Total energy + Delta-G solvation = -3918.841358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -43.76423 -41.26603 -39.46256 -37.70381 -36.96701 -34.93778 -34.43082 -33.12844 -33.05624 -31.57983 -28.41063 -28.21378 -27.73991 -26.18859 -25.27625 -23.85679 -22.85016 -21.63612 -21.12467 -20.26718 -18.96871 -18.54575 -18.08625 -17.52561 -17.03188 -17.00396 -16.61954 -16.21177 -15.85329 -15.44064 -15.21678 -14.94179 -14.89110 -14.58774 -14.26758 -14.15370 -14.01871 -13.76277 -13.68295 -13.64132 -13.42084 -13.26710 -12.95737 -12.82229 -12.65287 -12.35535 -12.16490 -12.12102 -11.75016 -11.66510 -11.53115 -11.45759 -11.32823 -11.21838 -10.53827 -10.39337 -9.90263 -9.80587 -8.78483 -8.19164 -5.50676 0.28333 0.65227 1.10032 1.30882 1.35088 1.41539 1.52778 1.57245 1.98689 2.43659 3.00576 3.12561 3.36369 3.44080 3.77126 3.89876 3.98198 4.04761 4.20314 4.21975 4.24009 4.32022 4.33722 4.39377 4.50063 4.50914 4.53144 4.66062 4.78064 4.80280 4.89080 4.94199 5.05461 5.07248 5.14872 5.20796 5.33799 5.39241 5.46325 5.53615 5.59928 5.93956 6.13029 6.16130 6.74676 6.81385 7.01262 7.67700 8.08149 9.01664 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015928 B = 0.003699 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.531839 B = 7567.620897 C = 8470.603744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.585 3.415 4 O -0.565 6.565 5 C -0.015 4.015 6 C -0.132 4.132 7 Cl -0.028 7.028 8 C 0.030 3.970 9 N -0.274 5.274 10 N -0.260 5.260 11 C 0.076 3.924 12 C 0.159 3.841 13 H 0.059 0.941 14 C -0.106 4.106 15 C -0.128 4.128 16 C 0.136 3.864 17 N -0.614 5.614 18 C -0.255 4.255 19 H 0.032 0.968 20 C -0.025 4.025 21 N -0.951 5.951 22 Si 0.948 3.052 23 H -0.276 1.276 24 H -0.313 1.313 25 H -0.251 1.251 26 C 0.145 3.855 27 C -0.141 4.141 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.076 0.924 31 H 0.225 0.775 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.261 0.739 42 H 0.018 0.982 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.547 13.193 13.553 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.319 5.319 3 C 0.370 3.630 4 O -0.442 6.442 5 C -0.146 4.146 6 C -0.170 4.170 7 Cl 0.000 7.000 8 C -0.147 4.147 9 N -0.105 5.105 10 N -0.049 5.049 11 C -0.063 4.063 12 C 0.057 3.943 13 H 0.077 0.923 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.014 3.986 17 N -0.337 5.337 18 C -0.385 4.385 19 H 0.050 0.950 20 C -0.221 4.221 21 N -0.595 5.595 22 Si 0.777 3.223 23 H -0.204 1.204 24 H -0.242 1.242 25 H -0.175 1.175 26 C 0.018 3.982 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.138 0.862 33 H 0.107 0.893 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.047 0.953 38 H 0.105 0.895 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.036 0.964 43 H 0.092 0.908 44 H 0.110 0.890 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -19.112 13.507 14.462 27.511 hybrid contribution 0.846 -0.748 -2.218 2.489 sum -18.266 12.758 12.244 25.423 Atomic orbital electron populations 1.22018 0.76924 1.04934 1.03002 1.48227 1.08609 1.04750 1.70355 1.17254 0.85873 0.82972 0.76926 1.90892 1.15448 1.87108 1.50748 1.21035 1.07093 0.97898 0.88579 1.21469 1.09811 0.99401 0.86301 1.98372 1.96029 1.96352 1.09253 1.23968 1.02520 0.99861 0.88385 1.73256 1.15913 1.03599 1.17693 1.45820 1.37879 1.14184 1.06983 1.22647 1.05056 1.02451 0.76110 1.21179 0.95870 0.81159 0.96139 0.92271 1.21353 0.98175 0.99420 0.95437 1.20765 0.96972 0.97796 1.01163 1.20622 1.00691 0.95968 0.81347 1.44389 1.04778 1.80966 1.03615 1.18612 0.87206 1.34949 0.97718 0.95028 1.26028 0.99535 1.00005 0.96562 1.70083 1.39033 1.45097 1.05279 0.85794 0.79238 0.79368 0.77921 1.20403 1.24181 1.17500 1.20741 0.88690 0.92847 0.95939 1.23088 1.00905 0.97982 0.96282 0.92042 0.87326 0.90550 0.75869 0.86215 0.89340 0.85994 0.88888 0.88892 0.95297 0.89540 0.92746 0.91548 0.93052 0.96434 0.90782 0.89023 0.96419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.25 8.95 127.77 1.14 2.39 16 2 N -0.59 -15.78 2.62 -828.59 -2.17 -17.95 16 3 C 0.59 18.64 6.78 86.55 0.59 19.23 16 4 O -0.56 -24.25 16.44 -4.16 -0.07 -24.32 16 5 C -0.01 -0.39 4.88 40.76 0.20 -0.19 16 6 C -0.13 -3.24 6.89 22.72 0.16 -3.08 16 7 Cl -0.03 -0.75 29.24 -2.72 -0.08 -0.83 16 8 C 0.03 0.57 12.04 85.22 1.03 1.60 16 9 N -0.27 -5.43 11.89 -57.07 -0.68 -6.11 16 10 N -0.26 -5.18 3.70 -355.93 -1.32 -6.50 16 11 C 0.08 0.88 11.21 127.77 1.43 2.31 16 12 C 0.16 5.13 2.28 44.69 0.10 5.23 16 13 H 0.06 2.59 5.57 -2.38 -0.01 2.58 16 14 C -0.11 -2.53 4.42 29.51 0.13 -2.40 16 15 C -0.13 -3.70 5.20 28.36 0.15 -3.55 16 16 C 0.14 4.71 6.11 83.58 0.51 5.22 16 17 N -0.61 -27.71 2.25 -707.93 -1.59 -29.30 16 18 C -0.25 -14.67 9.96 84.03 0.84 -13.84 16 19 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 20 C -0.03 -1.51 5.28 84.86 0.45 -1.06 16 21 N -0.95 -61.57 13.97 21.65 0.30 -61.27 16 22 Si 0.95 46.40 25.16 68.60 1.73 48.13 16 23 H -0.28 -12.93 6.69 99.48 0.67 -12.27 16 24 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 25 H -0.25 -11.33 7.11 99.48 0.71 -10.63 16 26 C 0.15 5.76 4.25 87.58 0.37 6.13 16 27 C -0.14 -5.09 5.96 31.86 0.19 -4.90 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.11 1.31 7.30 -2.39 -0.02 1.29 16 30 H 0.08 1.09 6.95 -2.39 -0.02 1.07 16 31 H 0.22 2.63 8.06 -2.91 -0.02 2.61 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.22 7.67 -2.38 -0.02 1.20 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.09 1.65 7.93 -2.38 -0.02 1.64 16 36 H 0.09 1.91 6.28 -2.39 -0.01 1.89 16 37 H 0.03 1.06 6.93 -2.39 -0.02 1.04 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 2.00 7.99 -2.39 -0.02 1.98 16 40 H 0.07 1.90 8.13 -2.38 -0.02 1.88 16 41 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 42 H 0.02 0.81 2.77 -2.39 -0.01 0.80 16 43 H 0.07 2.33 6.88 -2.39 -0.02 2.31 16 44 H 0.09 2.58 7.14 -2.39 -0.02 2.56 16 45 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -81.84 367.03 4.37 -77.47 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.97 Total: 7.59 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.28 Total: 13.10 kcal Atomic # 7 Polarization: -115.68 SS G_CDS: -5.46 Total: -121.14 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.07 Total: -24.32 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.73 Total: 48.13 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -81.84 4.37 -77.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948377189.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.701 kcal (2) G-P(sol) polarization free energy of solvation -81.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds