Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00196 * 2 1 4 4 O 1.21572 * 119.99959 * 183.51051 * 3 2 1 5 5 C 1.47661 * 120.00049 * 3.50122 * 3 2 1 6 6 N 1.31827 * 126.45917 * 354.11910 * 5 3 2 7 7 N 1.28475 * 110.13445 * 180.02562 * 6 5 3 8 8 C 1.46506 * 124.93374 * 179.97438 * 7 6 5 9 9 C 1.35643 * 110.13354 * 359.97438 * 7 6 5 10 10 C 1.35464 * 107.12672 * 0.23835 * 9 7 6 11 11 Cl 1.73601 * 127.23470 * 179.72305 * 10 9 7 12 12 C 1.46496 * 119.99911 * 179.97438 * 2 1 3 13 13 H 1.09008 * 109.49085 * 180.02562 * 12 2 1 14 14 C 1.52569 * 109.48914 * 59.95763 * 12 2 1 15 15 C 1.47104 * 114.32608 * 155.01900 * 14 12 2 16 16 C 1.54865 * 110.31879 * 62.80423 * 15 14 12 17 17 N 1.44579 * 109.60304 * 288.73066 * 16 15 14 18 18 C 1.36936 * 118.64519 * 270.73001 * 17 16 15 19 19 H 1.08000 * 120.00267 * 29.94366 * 18 17 16 20 20 C 1.38810 * 119.99990 * 209.93805 * 18 17 16 21 21 N 1.31615 * 119.99981 * 9.71630 * 20 18 17 22 22 Si 1.86797 * 120.00122 * 189.70776 * 20 18 17 23 23 H 1.48501 * 109.46944 * 60.00543 * 22 20 18 24 24 H 1.48505 * 109.47402 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47339 * 300.00699 * 22 20 18 26 26 C 1.47606 * 122.71258 * 90.74689 * 17 16 15 27 27 C 1.50887 * 109.49424 * 300.04928 * 12 2 1 28 28 H 1.09001 * 109.47179 * 83.87854 * 1 2 3 29 29 H 1.08998 * 109.47666 * 203.87602 * 1 2 3 30 30 H 1.09001 * 109.47087 * 323.87948 * 1 2 3 31 31 H 1.08997 * 109.46727 * 270.02210 * 8 7 6 32 32 H 1.08996 * 109.46951 * 30.02033 * 8 7 6 33 33 H 1.09000 * 109.47107 * 150.02121 * 8 7 6 34 34 H 1.07991 * 126.43571 * 179.97438 * 9 7 6 35 35 H 1.08995 * 108.51588 * 276.26880 * 14 12 2 36 36 H 1.08996 * 108.51146 * 33.92531 * 14 12 2 37 37 H 1.08998 * 109.32721 * 183.06310 * 15 14 12 38 38 H 1.08998 * 109.32699 * 302.71713 * 15 14 12 39 39 H 1.08996 * 109.45279 * 48.77365 * 16 15 14 40 40 H 1.09007 * 109.44563 * 168.69507 * 16 15 14 41 41 H 0.97000 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.08998 * 108.94545 * 78.53247 * 26 17 16 43 43 H 1.09000 * 108.94990 * 197.25172 * 26 17 16 44 44 H 1.08997 * 109.35969 * 332.04275 * 27 12 2 45 45 H 1.08994 * 109.36574 * 91.65574 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1681 -0.0645 5 6 1.4027 2.4448 0.0781 6 7 0.0938 2.5981 0.0433 7 7 -0.2081 3.8436 0.1339 8 6 -1.5719 4.3789 0.1277 9 6 0.9192 4.5911 0.2362 10 6 1.9694 3.7362 0.1994 11 17 3.6557 4.1396 0.2848 12 6 2.1974 -1.2687 0.0006 13 1 3.2692 -1.0699 0.0009 14 6 1.8283 -2.0701 -1.2441 15 6 2.8546 -3.0339 -1.6707 16 6 3.0735 -4.1064 -0.5752 17 7 3.7533 -3.5138 0.5548 18 6 5.1225 -3.5145 0.5714 19 1 5.6739 -3.4808 -0.3566 20 6 5.8019 -3.5585 1.7811 21 7 5.1443 -3.7914 2.8971 22 14 7.6496 -3.2873 1.8250 23 1 7.9651 -1.9403 1.2851 24 1 8.1311 -3.3845 3.2264 25 1 8.3216 -4.3218 0.9982 26 6 3.0322 -2.9084 1.6916 27 6 1.8323 -2.0603 1.2321 28 1 -0.3633 0.1096 -1.0218 29 1 -0.3634 -0.9397 0.4159 30 1 -0.3633 0.8301 0.6058 31 1 -1.8727 4.5948 -0.8974 32 1 -2.2522 3.6447 0.5591 33 1 -1.6052 5.2953 0.7169 34 1 0.9701 5.6661 0.3254 35 1 0.9049 -2.6136 -1.0446 36 1 1.6488 -1.3739 -2.0633 37 1 2.5327 -3.5195 -2.5919 38 1 3.7921 -2.5073 -1.8490 39 1 2.1089 -4.4988 -0.2535 40 1 3.6791 -4.9183 -0.9781 41 1 5.6192 -3.8225 3.7424 42 1 2.6746 -3.7024 2.3472 43 1 3.7202 -2.2726 2.2490 44 1 1.5467 -1.3754 2.0304 45 1 0.9927 -2.7168 1.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948405294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = 83.958129 kcal Electronic energy + Delta-G solvation = -28540.797514 eV Core-core repulsion = 24622.811680 eV Total energy + Delta-G solvation = -3917.985834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.90317 -39.62406 -37.49798 -36.50408 -35.15183 -33.74780 -32.95427 -31.29927 -30.75564 -30.36401 -27.81853 -26.72999 -25.79517 -24.31344 -23.20995 -22.47549 -21.77814 -19.91148 -19.41104 -18.78907 -17.55371 -16.73648 -16.60437 -16.50411 -15.78620 -15.12886 -14.80154 -14.63175 -14.29102 -13.97276 -13.77685 -13.47794 -13.36951 -13.17599 -13.06418 -12.78001 -12.70290 -12.43872 -12.25245 -11.91591 -11.82095 -11.29561 -11.15674 -10.95956 -10.71588 -10.63777 -10.57950 -10.30597 -10.17145 -9.91592 -9.84075 -9.62777 -9.54575 -9.48779 -9.44294 -8.95000 -8.29105 -8.18743 -6.48814 -5.64811 -3.12856 1.38960 1.73543 1.75922 2.52695 3.28874 3.49944 3.53362 3.54294 3.58435 4.09819 4.38707 4.58142 4.61124 4.62894 4.87827 4.96730 5.17202 5.31917 5.41958 5.45658 5.59175 5.66573 5.67657 5.79022 5.94197 6.02452 6.08653 6.20604 6.31474 6.36712 6.42618 6.58862 6.65352 6.75632 6.80531 6.87049 6.98525 7.14087 7.20209 7.51403 7.54777 7.75322 7.84611 7.95780 8.50273 8.63137 9.38435 10.03686 10.49433 11.42518 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.003634 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.934687 B = 7702.345117 C = 8982.416054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.597 5.597 3 C 0.589 3.411 4 O -0.509 6.509 5 C 0.010 3.990 6 N -0.246 5.246 7 N -0.288 5.288 8 C 0.090 3.910 9 C -0.005 4.005 10 C -0.103 4.103 11 Cl -0.007 7.007 12 C 0.151 3.849 13 H 0.117 0.883 14 C -0.104 4.104 15 C -0.146 4.146 16 C 0.158 3.842 17 N -0.591 5.591 18 C -0.256 4.256 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.908 5.908 22 Si 0.901 3.099 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.185 3.815 27 C -0.148 4.148 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.190 0.810 35 H 0.049 0.951 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.253 0.747 42 H 0.028 0.972 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.376 17.596 -5.704 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C 0.373 3.627 4 O -0.381 6.381 5 C -0.151 4.151 6 N -0.082 5.082 7 N -0.076 5.076 8 C -0.051 4.051 9 C -0.149 4.149 10 C -0.141 4.141 11 Cl 0.022 6.978 12 C 0.049 3.951 13 H 0.135 0.865 14 C -0.143 4.143 15 C -0.187 4.187 16 C 0.030 3.970 17 N -0.313 5.313 18 C -0.386 4.386 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.552 5.552 22 Si 0.731 3.269 23 H -0.208 1.208 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.059 3.941 27 C -0.188 4.188 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.115 0.885 34 H 0.207 0.793 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.656 17.051 -5.619 25.180 hybrid contribution 1.498 0.843 0.136 1.724 sum -16.158 17.894 -5.483 24.725 Atomic orbital electron populations 1.21977 0.79791 1.03111 1.01734 1.47990 1.07107 1.05912 1.71918 1.16890 0.86387 0.81512 0.77865 1.90883 1.12218 1.85978 1.49060 1.22107 0.89084 0.94917 1.08958 1.73879 1.15329 0.99674 1.19296 1.45523 1.07605 1.03632 1.50860 1.22213 0.77599 1.00661 1.04579 1.22590 0.84704 0.98971 1.08626 1.20866 0.88246 0.92650 1.12289 1.98380 1.09417 1.93168 1.96846 1.20721 0.98937 0.80544 0.94886 0.86493 1.20611 0.99237 0.97669 0.96765 1.21465 0.98931 0.99032 0.99238 1.20699 0.95376 0.92809 0.88122 1.43630 1.02736 1.65384 1.19520 1.19141 0.81959 1.45217 0.92264 0.91926 1.25102 0.97775 0.99959 0.96231 1.70000 1.34632 1.52888 0.97705 0.86392 0.85647 0.78385 0.76489 1.20810 1.21724 1.20979 1.20950 0.90336 0.94178 0.88630 1.22468 1.01033 0.98680 0.96612 0.93268 0.91355 0.89524 0.89482 0.88225 0.88471 0.79318 0.93230 0.93700 0.93243 0.91894 0.95087 0.93632 0.93738 0.95426 0.90585 0.92516 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 8.95 59.84 0.54 1.56 16 2 N -0.60 -10.30 2.60 -176.60 -0.46 -10.76 16 3 C 0.59 11.07 7.68 -12.41 -0.10 10.97 16 4 O -0.51 -11.44 15.23 5.30 0.08 -11.36 16 5 C 0.01 0.16 6.82 -82.76 -0.56 -0.40 16 6 N -0.25 -3.02 8.48 33.42 0.28 -2.74 16 7 N -0.29 -2.54 3.72 -67.94 -0.25 -2.79 16 8 C 0.09 0.29 11.32 59.85 0.68 0.97 16 9 C -0.01 -0.05 11.49 -16.86 -0.19 -0.24 16 10 C -0.10 -1.41 6.80 -39.31 -0.27 -1.68 16 11 Cl -0.01 -0.10 28.19 -51.86 -1.46 -1.56 16 12 C 0.15 2.93 2.13 -69.21 -0.15 2.78 16 13 H 0.12 2.83 6.25 -51.92 -0.32 2.51 16 14 C -0.10 -1.83 4.30 -29.78 -0.13 -1.95 16 15 C -0.15 -2.73 5.74 -28.58 -0.16 -2.89 16 16 C 0.16 3.37 5.65 -4.08 -0.02 3.35 16 17 N -0.59 -15.02 2.27 -172.09 -0.39 -15.41 16 18 C -0.26 -7.22 9.43 -15.06 -0.14 -7.37 16 19 H 0.06 1.76 7.85 -52.49 -0.41 1.35 16 20 C 0.01 0.22 5.00 -17.43 -0.09 0.13 16 21 N -0.91 -26.97 10.89 55.49 0.60 -26.37 16 22 Si 0.90 22.86 29.56 -169.99 -5.03 17.83 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 25 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 26 C 0.18 4.54 4.64 -2.94 -0.01 4.53 16 27 C -0.15 -2.92 4.40 -27.30 -0.12 -3.04 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.85 7.20 -51.93 -0.37 0.47 16 30 H 0.09 1.09 5.35 -51.93 -0.28 0.81 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.06 8.13 -51.93 -0.42 -0.36 16 34 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 36 H 0.04 0.76 8.04 -51.93 -0.42 0.34 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.03 0.62 8.07 -51.93 -0.42 0.20 16 40 H 0.05 0.98 7.99 -51.92 -0.41 0.57 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.03 0.73 8.00 -51.93 -0.42 0.31 16 43 H 0.08 2.14 6.42 -51.93 -0.33 1.80 16 44 H 0.06 1.09 7.99 -51.93 -0.41 0.67 16 45 H 0.05 0.86 7.20 -51.93 -0.37 0.48 16 LS Contribution 369.51 15.07 5.57 5.57 Total: -1.00 -34.75 369.51 -8.44 -43.19 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -6.65 Total: -2.33 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.73 Total: 6.72 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.21 Total: -58.07 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.46 Total: -1.56 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.75 -8.44 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948405294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.147 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds