Wall clock time and date at job start Sat Apr 11 2020 06:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34777 * 120.00196 * 2 1 4 4 O 1.21572 * 119.99959 * 183.51051 * 3 2 1 5 5 C 1.47661 * 120.00049 * 3.50122 * 3 2 1 6 6 N 1.31827 * 126.45917 * 354.11910 * 5 3 2 7 7 N 1.28475 * 110.13445 * 180.02562 * 6 5 3 8 8 C 1.46506 * 124.93374 * 179.97438 * 7 6 5 9 9 C 1.35643 * 110.13354 * 359.97438 * 7 6 5 10 10 C 1.35464 * 107.12672 * 0.23835 * 9 7 6 11 11 Cl 1.73601 * 127.23470 * 179.72305 * 10 9 7 12 12 C 1.46496 * 119.99911 * 179.97438 * 2 1 3 13 13 H 1.09008 * 109.49085 * 180.02562 * 12 2 1 14 14 C 1.52569 * 109.48914 * 59.95763 * 12 2 1 15 15 C 1.47104 * 114.32608 * 155.01900 * 14 12 2 16 16 C 1.54865 * 110.31879 * 62.80423 * 15 14 12 17 17 N 1.44579 * 109.60304 * 288.73066 * 16 15 14 18 18 C 1.36936 * 118.64519 * 270.73001 * 17 16 15 19 19 H 1.08000 * 120.00267 * 29.94366 * 18 17 16 20 20 C 1.38810 * 119.99990 * 209.93805 * 18 17 16 21 21 N 1.31615 * 119.99981 * 9.71630 * 20 18 17 22 22 Si 1.86797 * 120.00122 * 189.70776 * 20 18 17 23 23 H 1.48501 * 109.46944 * 60.00543 * 22 20 18 24 24 H 1.48505 * 109.47402 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47339 * 300.00699 * 22 20 18 26 26 C 1.47606 * 122.71258 * 90.74689 * 17 16 15 27 27 C 1.50887 * 109.49424 * 300.04928 * 12 2 1 28 28 H 1.09001 * 109.47179 * 83.87854 * 1 2 3 29 29 H 1.08998 * 109.47666 * 203.87602 * 1 2 3 30 30 H 1.09001 * 109.47087 * 323.87948 * 1 2 3 31 31 H 1.08997 * 109.46727 * 270.02210 * 8 7 6 32 32 H 1.08996 * 109.46951 * 30.02033 * 8 7 6 33 33 H 1.09000 * 109.47107 * 150.02121 * 8 7 6 34 34 H 1.07991 * 126.43571 * 179.97438 * 9 7 6 35 35 H 1.08995 * 108.51588 * 276.26880 * 14 12 2 36 36 H 1.08996 * 108.51146 * 33.92531 * 14 12 2 37 37 H 1.08998 * 109.32721 * 183.06310 * 15 14 12 38 38 H 1.08998 * 109.32699 * 302.71713 * 15 14 12 39 39 H 1.08996 * 109.45279 * 48.77365 * 16 15 14 40 40 H 1.09007 * 109.44563 * 168.69507 * 16 15 14 41 41 H 0.97000 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.08998 * 108.94545 * 78.53247 * 26 17 16 43 43 H 1.09000 * 108.94990 * 197.25172 * 26 17 16 44 44 H 1.08997 * 109.35969 * 332.04275 * 27 12 2 45 45 H 1.08994 * 109.36574 * 91.65574 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3529 1.1681 -0.0645 5 6 1.4027 2.4448 0.0781 6 7 0.0938 2.5981 0.0433 7 7 -0.2081 3.8436 0.1339 8 6 -1.5719 4.3789 0.1277 9 6 0.9192 4.5911 0.2362 10 6 1.9694 3.7362 0.1994 11 17 3.6557 4.1396 0.2848 12 6 2.1974 -1.2687 0.0006 13 1 3.2692 -1.0699 0.0009 14 6 1.8283 -2.0701 -1.2441 15 6 2.8546 -3.0339 -1.6707 16 6 3.0735 -4.1064 -0.5752 17 7 3.7533 -3.5138 0.5548 18 6 5.1225 -3.5145 0.5714 19 1 5.6739 -3.4808 -0.3566 20 6 5.8019 -3.5585 1.7811 21 7 5.1443 -3.7914 2.8971 22 14 7.6496 -3.2873 1.8250 23 1 7.9651 -1.9403 1.2851 24 1 8.1311 -3.3845 3.2264 25 1 8.3216 -4.3218 0.9982 26 6 3.0322 -2.9084 1.6916 27 6 1.8323 -2.0603 1.2321 28 1 -0.3633 0.1096 -1.0218 29 1 -0.3634 -0.9397 0.4159 30 1 -0.3633 0.8301 0.6058 31 1 -1.8727 4.5948 -0.8974 32 1 -2.2522 3.6447 0.5591 33 1 -1.6052 5.2953 0.7169 34 1 0.9701 5.6661 0.3254 35 1 0.9049 -2.6136 -1.0446 36 1 1.6488 -1.3739 -2.0633 37 1 2.5327 -3.5195 -2.5919 38 1 3.7921 -2.5073 -1.8490 39 1 2.1089 -4.4988 -0.2535 40 1 3.6791 -4.9183 -0.9781 41 1 5.6192 -3.8225 3.7424 42 1 2.6746 -3.7024 2.3472 43 1 3.7202 -2.2726 2.2490 44 1 1.5467 -1.3754 2.0304 45 1 0.9927 -2.7168 1.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948405294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:46 Heat of formation + Delta-G solvation = 61.819821 kcal Electronic energy + Delta-G solvation = -28541.757503 eV Core-core repulsion = 24622.811680 eV Total energy + Delta-G solvation = -3918.945823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.76357 -41.05671 -39.13596 -37.53335 -36.76040 -34.97399 -34.27969 -32.82677 -32.45347 -31.60826 -28.66586 -28.04157 -27.43905 -25.83737 -25.08614 -23.69856 -22.57675 -21.26794 -21.10932 -20.25368 -18.55670 -18.47788 -17.84062 -17.50173 -17.16217 -16.80418 -16.25944 -15.95297 -15.59949 -15.55300 -15.08272 -14.91909 -14.71923 -14.25691 -14.16545 -13.90456 -13.72724 -13.64332 -13.53298 -13.44854 -13.05679 -12.99234 -12.82155 -12.73555 -12.41740 -12.21728 -12.04931 -12.02619 -11.79345 -11.66760 -11.47114 -11.38452 -11.34051 -10.90695 -10.44631 -10.35451 -9.90992 -9.54503 -8.57662 -7.84205 -5.33896 0.38668 0.83725 0.96531 1.41555 1.46487 1.51604 1.66951 2.07173 2.24240 2.51131 3.26572 3.30682 3.65731 3.68750 3.79631 3.90994 4.08050 4.28825 4.32125 4.41180 4.45107 4.46620 4.48394 4.51412 4.65273 4.73921 4.76108 4.77752 4.86542 4.95286 5.03367 5.07548 5.14781 5.21985 5.24575 5.37049 5.54296 5.59164 5.63900 5.69368 5.76355 5.80259 6.38845 6.44785 6.66858 7.15391 7.21596 7.98171 8.36074 9.20072 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013472 B = 0.003634 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.934687 B = 7702.345117 C = 8982.416054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.596 5.596 3 C 0.579 3.421 4 O -0.564 6.564 5 C -0.027 4.027 6 N -0.241 5.241 7 N -0.271 5.271 8 C 0.075 3.925 9 C 0.025 3.975 10 C -0.137 4.137 11 Cl -0.030 7.030 12 C 0.158 3.842 13 H 0.061 0.939 14 C -0.099 4.099 15 C -0.133 4.133 16 C 0.153 3.847 17 N -0.605 5.605 18 C -0.263 4.263 19 H 0.057 0.943 20 C -0.045 4.045 21 N -0.933 5.933 22 Si 0.958 3.042 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.270 1.270 26 C 0.197 3.803 27 C -0.130 4.130 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.132 0.868 34 H 0.236 0.764 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.248 0.752 42 H 0.005 0.995 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.074 19.227 -6.946 29.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.327 5.327 3 C 0.366 3.634 4 O -0.441 6.441 5 C -0.186 4.186 6 N -0.079 5.079 7 N -0.060 5.060 8 C -0.062 4.062 9 C -0.119 4.119 10 C -0.175 4.175 11 Cl -0.002 7.002 12 C 0.055 3.945 13 H 0.079 0.921 14 C -0.137 4.137 15 C -0.174 4.174 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.394 4.394 19 H 0.075 0.925 20 C -0.240 4.240 21 N -0.579 5.579 22 Si 0.786 3.214 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.196 1.196 26 C 0.071 3.929 27 C -0.170 4.170 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.150 0.850 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.023 0.977 43 H 0.047 0.953 44 H 0.078 0.922 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.426 18.667 -6.894 29.241 hybrid contribution 2.473 0.434 0.485 2.557 sum -18.953 19.100 -6.409 27.661 Atomic orbital electron populations 1.22184 0.76903 1.04241 1.03058 1.48011 1.08703 1.04708 1.71328 1.17452 0.86123 0.82999 0.76866 1.90839 1.14685 1.86983 1.51636 1.21629 0.90411 0.93894 1.12623 1.73771 1.13473 1.01627 1.19027 1.46158 1.09529 1.02563 1.47702 1.22803 0.74522 1.02119 1.06768 1.23187 0.83221 1.00366 1.05152 1.21137 0.88169 0.93171 1.15020 1.98360 1.11579 1.93140 1.97094 1.20356 0.96372 0.81906 0.95840 0.92082 1.20541 0.99783 0.97503 0.95878 1.21321 0.98049 0.98281 0.99708 1.20896 0.95728 0.93342 0.87391 1.43814 1.02166 1.66136 1.20624 1.19391 0.83749 1.44130 0.92088 0.92480 1.25772 1.01528 1.00641 0.96107 1.70151 1.35703 1.54269 0.97810 0.85493 0.81476 0.77953 0.76468 1.21605 1.21570 1.19577 1.20626 0.90883 0.93193 0.88192 1.22228 0.99410 0.98421 0.96900 0.91668 0.89996 0.88703 0.87439 0.87378 0.84995 0.74751 0.90196 0.92640 0.89613 0.95158 0.92967 0.94281 0.94311 0.97671 0.95273 0.92248 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.87 8.95 127.77 1.14 3.01 16 2 N -0.60 -20.44 2.60 -830.91 -2.16 -22.60 16 3 C 0.58 22.49 7.68 86.73 0.67 23.15 16 4 O -0.56 -27.26 15.23 -3.94 -0.06 -27.32 16 5 C -0.03 -0.82 6.82 42.45 0.29 -0.53 16 6 N -0.24 -5.33 8.48 -48.18 -0.41 -5.74 16 7 N -0.27 -3.73 3.72 -368.86 -1.37 -5.10 16 8 C 0.08 0.10 11.32 127.77 1.45 1.54 16 9 C 0.03 0.38 11.49 83.46 0.96 1.34 16 10 C -0.14 -3.66 6.80 22.44 0.15 -3.51 16 11 Cl -0.03 -0.91 28.19 -2.72 -0.08 -0.99 16 12 C 0.16 6.21 2.13 44.16 0.09 6.31 16 13 H 0.06 3.14 6.25 -2.38 -0.01 3.13 16 14 C -0.10 -3.27 4.30 28.62 0.12 -3.15 16 15 C -0.13 -4.83 5.74 29.40 0.17 -4.66 16 16 C 0.15 6.45 5.65 87.37 0.49 6.94 16 17 N -0.60 -31.71 2.27 -698.36 -1.58 -33.29 16 18 C -0.26 -15.46 9.43 84.03 0.79 -14.67 16 19 H 0.06 3.35 7.85 -2.91 -0.02 3.32 16 20 C -0.05 -2.70 5.00 84.86 0.42 -2.28 16 21 N -0.93 -57.99 10.89 21.65 0.24 -57.76 16 22 Si 0.96 48.88 29.56 68.60 2.03 50.91 16 23 H -0.29 -14.98 7.11 99.48 0.71 -14.28 16 24 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 25 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 26 C 0.20 10.09 4.64 86.49 0.40 10.49 16 27 C -0.13 -5.11 4.40 30.23 0.13 -4.98 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.73 7.20 -2.39 -0.02 1.72 16 30 H 0.09 2.15 5.35 -2.39 -0.01 2.13 16 31 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.13 -0.65 8.13 -2.39 -0.02 -0.67 16 34 H 0.24 1.19 8.06 -2.92 -0.02 1.16 16 35 H 0.08 2.21 7.36 -2.39 -0.02 2.19 16 36 H 0.05 1.74 8.04 -2.39 -0.02 1.72 16 37 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.05 1.98 8.07 -2.39 -0.02 1.96 16 40 H 0.04 1.68 7.99 -2.38 -0.02 1.66 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.01 0.29 8.00 -2.39 -0.02 0.27 16 43 H 0.03 1.74 6.42 -2.39 -0.02 1.72 16 44 H 0.06 2.28 7.99 -2.39 -0.02 2.26 16 45 H 0.08 2.64 7.20 -2.39 -0.02 2.62 16 Total: -1.00 -83.93 369.51 4.89 -79.04 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: 1.00 Total: 3.83 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.29 Total: 19.01 kcal Atomic # 7 Polarization: -119.20 SS G_CDS: -5.28 Total: -124.48 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.06 Total: -27.32 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -83.93 4.89 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948405294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.860 kcal (2) G-P(sol) polarization free energy of solvation -83.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds