Wall clock time and date at job start Sat Apr 11 2020 06:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34768 * 120.00191 * 2 1 4 4 O 1.21622 * 120.00310 * 185.23664 * 3 2 1 5 5 C 1.47303 * 120.00022 * 5.23206 * 3 2 1 6 6 C 1.41334 * 126.43785 * 325.31881 * 5 3 2 7 7 N 1.30409 * 108.04878 * 180.02562 * 6 5 3 8 8 N 1.39928 * 108.96325 * 0.02562 * 7 6 5 9 9 C 1.46493 * 125.75131 * 180.02562 * 8 7 6 10 10 C 1.34354 * 108.49682 * 359.97438 * 8 7 6 11 11 Cl 1.73598 * 126.31531 * 179.73691 * 10 8 7 12 12 C 1.46504 * 119.99759 * 180.02562 * 2 1 3 13 13 H 1.08995 * 110.21047 * 179.97438 * 12 2 1 14 14 C 1.50126 * 110.25020 * 301.93264 * 12 2 1 15 15 C 1.54634 * 110.92880 * 216.54676 * 14 12 2 16 16 C 1.54900 * 110.18887 * 321.33318 * 15 14 12 17 17 N 1.43433 * 116.08043 * 318.53540 * 16 15 14 18 18 C 1.36943 * 120.53326 * 271.58598 * 17 16 15 19 19 H 1.07998 * 120.00091 * 141.64755 * 18 17 16 20 20 C 1.38812 * 119.99865 * 321.64546 * 18 17 16 21 21 N 1.31623 * 119.99995 * 158.74127 * 20 18 17 22 22 Si 1.86799 * 120.00249 * 338.73642 * 20 18 17 23 23 H 1.48507 * 109.46735 * 95.25874 * 22 20 18 24 24 H 1.48491 * 109.47402 * 215.25917 * 22 20 18 25 25 H 1.48499 * 109.47214 * 335.26408 * 22 20 18 26 26 C 1.50168 * 118.93199 * 91.56404 * 17 16 15 27 27 C 1.46239 * 107.53297 * 289.59059 * 26 17 16 28 28 H 1.09000 * 109.47396 * 86.42757 * 1 2 3 29 29 H 1.09003 * 109.47372 * 206.43341 * 1 2 3 30 30 H 1.08997 * 109.46914 * 326.42895 * 1 2 3 31 31 H 1.08003 * 125.97439 * 359.97438 * 6 5 3 32 32 H 1.09006 * 109.46803 * 269.99276 * 9 8 7 33 33 H 1.08995 * 109.47571 * 29.99463 * 9 8 7 34 34 H 1.09002 * 109.47149 * 149.99548 * 9 8 7 35 35 H 1.09003 * 109.20896 * 337.00084 * 14 12 2 36 36 H 1.08996 * 109.20798 * 96.31164 * 14 12 2 37 37 H 1.09002 * 109.42236 * 201.05678 * 15 14 12 38 38 H 1.08999 * 109.13455 * 81.42880 * 15 14 12 39 39 H 1.08995 * 108.16281 * 196.81556 * 16 15 14 40 40 H 1.09000 * 108.16159 * 80.24461 * 16 15 14 41 41 H 0.96994 * 120.00212 * 180.02562 * 21 20 18 42 42 H 1.08993 * 109.84578 * 170.08140 * 26 17 16 43 43 H 1.08999 * 109.89831 * 49.12949 * 26 17 16 44 44 H 1.09001 * 108.51806 * 297.16957 * 27 26 17 45 45 H 1.08993 * 108.52569 * 179.64532 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3513 1.1693 -0.0961 5 6 1.4070 2.4401 0.1163 6 6 0.1308 2.7267 -0.4190 7 7 -0.1729 3.9552 -0.1041 8 7 0.8778 4.5078 0.6366 9 6 0.9207 5.8685 1.1775 10 6 1.8402 3.5797 0.7691 11 17 3.3517 3.7773 1.5996 12 6 2.1975 -1.2688 -0.0006 13 1 3.2716 -1.0835 -0.0009 14 6 1.8121 -2.0918 1.1944 15 6 3.0307 -2.8663 1.7479 16 6 3.9092 -3.3846 0.5821 17 7 3.2061 -3.9228 -0.5463 18 6 2.8617 -5.2476 -0.5842 19 1 1.9114 -5.5469 -1.0012 20 6 3.7340 -6.2060 -0.0868 21 7 3.2791 -7.3890 0.2683 22 14 5.5535 -5.8169 0.0786 23 1 5.8380 -5.3591 1.4624 24 1 6.3490 -7.0365 -0.2127 25 1 5.9200 -4.7456 -0.8823 26 6 2.8533 -3.0098 -1.6852 27 6 1.8059 -2.1039 -1.2154 28 1 -0.3634 0.0640 -1.0257 29 1 -0.3634 -0.9202 0.4575 30 1 -0.3633 0.8562 0.5683 31 1 -0.4848 2.0473 -0.9899 32 1 1.3695 6.5374 0.4430 33 1 -0.0922 6.2025 1.4019 34 1 1.5170 5.8782 2.0899 35 1 1.4210 -1.4348 1.9713 36 1 1.0392 -2.8038 0.9052 37 1 2.6835 -3.7115 2.3422 38 1 3.6214 -2.2006 2.3772 39 1 4.5689 -4.1595 0.9724 40 1 4.5313 -2.5605 0.2331 41 1 3.8886 -8.0585 0.6163 42 1 2.4858 -3.5949 -2.5282 43 1 3.7302 -2.4370 -1.9868 44 1 0.9260 -2.6945 -0.9605 45 1 1.5415 -1.4286 -2.0291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948552751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:05 Heat of formation + Delta-G solvation = 86.614693 kcal Electronic energy + Delta-G solvation = -28352.555227 eV Core-core repulsion = 24434.684590 eV Total energy + Delta-G solvation = -3917.870637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -41.84219 -39.81498 -37.79072 -37.26055 -35.41080 -34.01324 -32.70562 -31.85106 -31.00891 -30.32319 -27.77064 -26.98807 -26.15993 -24.50457 -23.22289 -22.57797 -21.63367 -20.17171 -19.75076 -19.04444 -17.74633 -16.77293 -16.47210 -16.26243 -16.18659 -15.26274 -15.13801 -14.84265 -14.51108 -14.23270 -14.01114 -13.74441 -13.47869 -13.25866 -13.17762 -12.86828 -12.80707 -12.48947 -12.43553 -12.15933 -12.05630 -11.91767 -11.80414 -11.55744 -11.20429 -10.94055 -10.71186 -10.49326 -10.30865 -10.05512 -9.92325 -9.86260 -9.71076 -9.61238 -9.36495 -9.02389 -8.44282 -8.40936 -6.72971 -5.95065 -3.38012 0.94510 1.00924 1.83282 2.11420 2.97549 3.23470 3.38136 3.52170 3.59609 3.94775 4.47686 4.58144 4.60302 4.62794 4.84597 4.90968 4.95781 5.01449 5.11011 5.23739 5.33293 5.36837 5.56583 5.63461 5.70907 5.86436 5.93408 5.96450 5.99971 6.06402 6.24404 6.34106 6.37433 6.53504 6.59536 6.69809 6.78394 6.83191 6.92172 6.95772 6.98557 7.03913 7.53631 8.13295 8.30251 8.39382 9.05572 9.76575 10.20956 11.20408 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023578 B = 0.002924 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.274210 B = 9572.258393 C =10202.309384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.600 5.600 3 C 0.589 3.411 4 O -0.530 6.530 5 C -0.260 4.260 6 C 0.086 3.914 7 N -0.276 5.276 8 N -0.356 5.356 9 C 0.091 3.909 10 C 0.175 3.825 11 Cl 0.025 6.975 12 C 0.147 3.853 13 H 0.107 0.893 14 C -0.114 4.114 15 C -0.136 4.136 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.263 4.263 19 H 0.076 0.924 20 C 0.036 3.964 21 N -0.902 5.902 22 Si 0.882 3.118 23 H -0.286 1.286 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.140 3.860 27 C -0.137 4.137 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.203 0.797 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.262 0.738 42 H 0.070 0.930 43 H 0.033 0.967 44 H 0.066 0.934 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 26.175 2.297 27.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.332 5.332 3 C 0.376 3.624 4 O -0.407 6.407 5 C -0.276 4.276 6 C -0.100 4.100 7 N -0.097 5.097 8 N -0.139 5.139 9 C -0.049 4.049 10 C 0.017 3.983 11 Cl 0.053 6.947 12 C 0.045 3.955 13 H 0.125 0.875 14 C -0.152 4.152 15 C -0.177 4.177 16 C 0.018 3.982 17 N -0.324 5.324 18 C -0.392 4.392 19 H 0.094 0.906 20 C -0.164 4.164 21 N -0.544 5.544 22 Si 0.712 3.288 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.194 1.194 26 C 0.015 3.985 27 C -0.177 4.177 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.220 0.780 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.051 0.949 44 H 0.085 0.915 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.673 27.070 2.314 28.232 hybrid contribution 1.560 -0.434 0.436 1.677 sum -6.113 26.637 2.750 27.467 Atomic orbital electron populations 1.22013 0.80274 1.03546 1.01410 1.47809 1.06701 1.05747 1.72917 1.17087 0.86463 0.82189 0.76628 1.90808 1.13314 1.86913 1.49632 1.19955 0.98738 0.95815 1.13092 1.24304 0.94139 0.93410 0.98146 1.77340 1.08114 1.10778 1.13485 1.48517 1.12127 1.11744 1.41484 1.22092 1.05526 0.77600 0.99719 1.22006 0.87222 0.90449 0.98655 1.98458 1.24095 1.97119 1.75050 1.20518 0.97908 0.80871 0.96220 0.87514 1.21722 0.99550 0.97693 0.96229 1.22693 0.96963 0.98718 0.99367 1.20691 0.93141 0.96117 0.88285 1.44204 1.69001 1.06242 1.12985 1.18718 1.00376 0.80098 1.40005 0.90638 1.25491 0.97722 0.94873 0.98318 1.69859 1.34798 1.06124 1.43575 0.86846 0.87450 0.76683 0.77779 1.21429 1.23206 1.19436 1.20362 0.95188 0.91727 0.91189 1.21286 1.01634 0.97898 0.96836 0.92469 0.90350 0.91149 0.78038 0.89686 0.88139 0.88955 0.93386 0.91057 0.91876 0.93232 0.94193 0.95046 0.92781 0.91183 0.94878 0.91516 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 8.28 59.85 0.50 1.19 16 2 N -0.60 -8.22 2.63 -177.18 -0.47 -8.68 16 3 C 0.59 8.83 7.52 -12.58 -0.09 8.73 16 4 O -0.53 -9.77 15.77 5.26 0.08 -9.69 16 5 C -0.26 -3.21 5.46 -105.02 -0.57 -3.78 16 6 C 0.09 0.85 9.65 -16.98 -0.16 0.69 16 7 N -0.28 -2.85 12.49 30.86 0.39 -2.46 16 8 N -0.36 -3.37 3.98 -64.32 -0.26 -3.62 16 9 C 0.09 0.45 11.28 59.84 0.67 1.12 16 10 C 0.17 1.99 7.51 -16.43 -0.12 1.86 16 11 Cl 0.02 0.27 27.97 -51.86 -1.45 -1.18 16 12 C 0.15 2.39 2.29 -69.60 -0.16 2.23 16 13 H 0.11 2.03 5.13 -51.93 -0.27 1.76 16 14 C -0.11 -1.90 4.30 -27.30 -0.12 -2.02 16 15 C -0.14 -2.62 6.40 -24.87 -0.16 -2.78 16 16 C 0.15 3.23 4.19 -4.66 -0.02 3.21 16 17 N -0.60 -14.09 2.18 -175.09 -0.38 -14.47 16 18 C -0.26 -7.23 9.96 -15.06 -0.15 -7.38 16 19 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 20 C 0.04 1.05 5.33 -17.43 -0.09 0.95 16 21 N -0.90 -27.46 13.97 55.49 0.78 -26.68 16 22 Si 0.88 22.75 25.03 -169.99 -4.25 18.49 16 23 H -0.29 -7.24 6.75 56.52 0.38 -6.86 16 24 H -0.30 -7.94 7.11 56.52 0.40 -7.53 16 25 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.14 2.73 6.11 -5.20 -0.03 2.70 16 27 C -0.14 -2.25 4.37 -30.18 -0.13 -2.38 16 28 H 0.06 0.45 7.44 -51.93 -0.39 0.06 16 29 H 0.08 0.77 7.23 -51.93 -0.38 0.39 16 30 H 0.07 0.59 5.56 -51.93 -0.29 0.30 16 31 H 0.20 1.40 6.11 -52.48 -0.32 1.08 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.33 7.78 -51.93 -0.40 -0.07 16 35 H 0.05 0.73 7.88 -51.93 -0.41 0.32 16 36 H 0.07 1.26 6.84 -51.93 -0.36 0.90 16 37 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.98 3.01 -51.93 -0.16 0.83 16 40 H 0.03 0.67 6.90 -51.93 -0.36 0.31 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.07 1.35 7.99 -51.93 -0.42 0.94 16 43 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 44 H 0.07 1.12 6.94 -51.93 -0.36 0.76 16 45 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -34.11 361.53 -6.97 -41.08 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -6.20 Total: -2.58 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.65 Total: 4.35 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: 0.06 Total: -55.92 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.08 Total: -9.69 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.25 Total: 18.49 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.45 Total: -1.18 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.11 -6.97 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948552751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.694 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds