Wall clock time and date at job start Sat Apr 11 2020 06:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99536 * 2 1 4 4 O 1.21579 * 119.99767 * 185.06673 * 3 2 1 5 5 C 1.47711 * 120.00169 * 5.06865 * 3 2 1 6 6 C 1.41503 * 126.51054 * 173.11722 * 5 3 2 7 7 C 1.35515 * 105.48177 * 180.02562 * 6 5 3 8 8 Cl 1.73602 * 126.40291 * 180.02562 * 7 6 5 9 9 N 1.35071 * 107.19495 * 0.25896 * 7 6 5 10 10 C 1.46498 * 124.87921 * 179.70458 * 9 7 6 11 11 N 1.28464 * 110.23150 * 359.55250 * 9 7 6 12 12 C 1.46502 * 120.00687 * 180.02562 * 2 1 3 13 13 H 1.08998 * 110.21506 * 181.93644 * 12 2 1 14 14 C 1.50129 * 110.24291 * 304.01853 * 12 2 1 15 15 C 1.54842 * 110.81386 * 216.65317 * 14 12 2 16 16 C 1.54910 * 110.14010 * 321.13282 * 15 14 12 17 17 N 1.43432 * 116.08210 * 318.64185 * 16 15 14 18 18 C 1.36931 * 120.53471 * 271.58889 * 17 16 15 19 19 H 1.08007 * 119.99668 * 140.88511 * 18 17 16 20 20 C 1.38810 * 120.00363 * 320.87672 * 18 17 16 21 21 N 1.31622 * 119.99895 * 158.71432 * 20 18 17 22 22 Si 1.86795 * 119.99778 * 338.71987 * 20 18 17 23 23 H 1.48505 * 109.47325 * 90.17254 * 22 20 18 24 24 H 1.48506 * 109.46994 * 210.16653 * 22 20 18 25 25 H 1.48499 * 109.47349 * 330.16797 * 22 20 18 26 26 C 1.50168 * 118.92329 * 91.56293 * 17 16 15 27 27 C 1.46241 * 107.53678 * 289.58969 * 26 17 16 28 28 H 1.08999 * 109.46861 * 85.00652 * 1 2 3 29 29 H 1.08999 * 109.46454 * 205.00454 * 1 2 3 30 30 H 1.08998 * 109.47286 * 324.99936 * 1 2 3 31 31 H 1.08003 * 127.26150 * 0.02562 * 6 5 3 32 32 H 1.09003 * 109.47221 * 90.00225 * 10 9 7 33 33 H 1.09005 * 109.46971 * 209.99529 * 10 9 7 34 34 H 1.08991 * 109.47581 * 330.00218 * 10 9 7 35 35 H 1.08998 * 109.21441 * 336.99307 * 14 12 2 36 36 H 1.08998 * 109.21154 * 96.31382 * 14 12 2 37 37 H 1.09000 * 109.35959 * 200.93129 * 15 14 12 38 38 H 1.09002 * 109.25254 * 81.26882 * 15 14 12 39 39 H 1.08997 * 108.15698 * 196.91896 * 16 15 14 40 40 H 1.09002 * 108.15495 * 80.36122 * 16 15 14 41 41 H 0.97003 * 119.99380 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.84427 * 170.08441 * 26 17 16 43 43 H 1.09004 * 109.84542 * 49.10003 * 26 17 16 44 44 H 1.09004 * 108.51896 * 297.17100 * 27 26 17 45 45 H 1.08994 * 108.52154 * 179.64988 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3510 1.1694 -0.0930 5 6 1.4045 2.4440 0.1130 6 6 1.9724 3.7313 0.2633 7 6 0.9218 4.5852 0.3240 8 17 1.0050 6.3096 0.5061 9 7 -0.2022 3.8433 0.2214 10 6 -1.5653 4.3795 0.2485 11 7 0.0960 2.6003 0.0935 12 6 2.1977 -1.2687 -0.0006 13 1 3.2713 -1.0836 0.0341 14 6 1.7750 -2.1131 1.1666 15 6 2.9798 -2.8955 1.7445 16 6 3.8922 -3.3943 0.5962 17 7 3.2226 -3.9133 -0.5612 18 6 2.8799 -5.2372 -0.6314 19 1 1.9368 -5.5283 -1.0699 20 6 3.7447 -6.2051 -0.1393 21 7 3.2848 -7.3950 0.1849 22 14 5.5611 -5.8187 0.0630 23 1 5.8025 -5.2720 1.4225 24 1 6.3546 -7.0608 -0.1190 25 1 5.9702 -4.8165 -0.9534 26 6 2.9030 -2.9812 -1.6943 27 6 1.8419 -2.0831 -1.2401 28 1 -0.3633 0.0895 -1.0238 29 1 -0.3632 -0.9314 0.4344 30 1 -0.3634 0.8418 0.5894 31 1 3.0217 3.9808 0.3181 32 1 -1.8813 4.6202 -0.7666 33 1 -2.2400 3.6356 0.6722 34 1 -1.5889 5.2815 0.8598 35 1 1.3595 -1.4703 1.9426 36 1 1.0119 -2.8197 0.8403 37 1 2.6157 -3.7506 2.3140 38 1 3.5517 -2.2406 2.4019 39 1 4.5406 -4.1757 0.9926 40 1 4.5241 -2.5644 0.2796 41 1 3.8891 -8.0712 0.5291 42 1 2.5604 -3.5518 -2.5575 43 1 3.7885 -2.4035 -1.9593 44 1 0.9551 -2.6778 -1.0211 45 1 1.6013 -1.3941 -2.0498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948602435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:15 Heat of formation + Delta-G solvation = 72.513726 kcal Electronic energy + Delta-G solvation = -28143.038819 eV Core-core repulsion = 24224.556718 eV Total energy + Delta-G solvation = -3918.482101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.88729 -41.22341 -39.35980 -37.99258 -36.87863 -34.91749 -34.31061 -33.45003 -32.73903 -31.59075 -28.82713 -28.03750 -27.77574 -25.98354 -25.08297 -23.94231 -22.63340 -21.59562 -21.20268 -20.33411 -18.71197 -18.44963 -18.01650 -17.67420 -17.50321 -16.80124 -16.41540 -16.18311 -15.58593 -15.38545 -15.17878 -15.05663 -14.96326 -14.66219 -14.27630 -14.14080 -13.81180 -13.66911 -13.55974 -13.54596 -13.50668 -13.14584 -13.11197 -12.69896 -12.57350 -12.48897 -12.31269 -11.90860 -11.83268 -11.74367 -11.54196 -11.41300 -11.21861 -11.09369 -10.51230 -10.33284 -10.13883 -9.64392 -8.69556 -8.17706 -5.57597 0.31893 0.36673 0.74451 1.31620 1.41181 1.43805 1.52604 1.99792 2.20216 2.43770 3.05709 3.06874 3.30307 3.62104 3.80871 4.00872 4.10703 4.11201 4.28859 4.30865 4.32436 4.38976 4.40866 4.43799 4.50666 4.62592 4.67981 4.71759 4.80224 4.92982 4.94744 5.00619 5.05689 5.08124 5.11277 5.19674 5.28954 5.38419 5.43309 5.45467 5.66408 5.98876 6.19495 6.30984 6.58663 7.01800 7.04810 7.64799 8.12346 9.01625 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029471 B = 0.002500 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.844249 B =11199.464706 C =11616.921649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.590 5.590 3 C 0.595 3.405 4 O -0.570 6.570 5 C -0.024 4.024 6 C -0.169 4.169 7 C 0.054 3.946 8 Cl 0.025 6.975 9 N -0.267 5.267 10 C 0.066 3.934 11 N -0.232 5.232 12 C 0.153 3.847 13 H 0.086 0.914 14 C -0.102 4.102 15 C -0.132 4.132 16 C 0.135 3.865 17 N -0.611 5.611 18 C -0.246 4.246 19 H 0.046 0.954 20 C -0.015 4.015 21 N -0.946 5.946 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.309 1.309 25 H -0.267 1.267 26 C 0.139 3.861 27 C -0.127 4.127 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.172 0.828 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.023 0.977 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.063 0.937 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.246 30.568 1.448 32.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.321 5.321 3 C 0.382 3.618 4 O -0.448 6.448 5 C -0.181 4.181 6 C -0.198 4.198 7 C -0.097 4.097 8 Cl 0.053 6.947 9 N -0.058 5.058 10 C -0.072 4.072 11 N -0.071 5.071 12 C 0.050 3.950 13 H 0.104 0.896 14 C -0.141 4.141 15 C -0.173 4.173 16 C 0.008 3.992 17 N -0.335 5.335 18 C -0.376 4.376 19 H 0.063 0.937 20 C -0.212 4.212 21 N -0.591 5.591 22 Si 0.769 3.231 23 H -0.202 1.202 24 H -0.237 1.237 25 H -0.192 1.192 26 C 0.016 3.984 27 C -0.166 4.166 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.190 0.810 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.089 0.911 39 H 0.040 0.960 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.082 0.918 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.725 30.026 1.339 32.639 hybrid contribution 1.654 -0.013 0.235 1.671 sum -11.070 30.013 1.574 32.029 Atomic orbital electron populations 1.22242 0.77087 1.04351 1.03192 1.47898 1.08557 1.04601 1.70998 1.17218 0.85861 0.82426 0.76277 1.90776 1.14594 1.87061 1.52353 1.21527 0.90220 0.94615 1.11769 1.21563 1.00500 0.89704 1.07987 1.21917 0.88209 0.87638 1.11891 1.98419 1.97818 1.02332 1.96105 1.46126 1.08601 1.02622 1.48451 1.22784 0.75517 1.02078 1.06790 1.73839 1.15313 0.98986 1.18970 1.20272 0.96996 0.81724 0.96013 0.89575 1.21636 0.98145 0.97349 0.96941 1.22643 0.97606 0.98824 0.98227 1.20840 0.93862 0.96112 0.88404 1.44314 1.70836 1.05163 1.13183 1.18600 0.99574 0.81794 1.37669 0.93681 1.26042 1.01169 0.94854 0.99139 1.69971 1.36029 1.06546 1.46512 0.85977 0.82867 0.75854 0.78380 1.20175 1.23742 1.19172 1.20498 0.96302 0.91230 0.90371 1.21089 1.00363 0.97748 0.97408 0.91829 0.90507 0.87970 0.81030 0.87250 0.86253 0.86574 0.91413 0.91995 0.93398 0.91135 0.95954 0.93942 0.92891 0.91262 0.94116 0.91804 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.57 9.01 127.77 1.15 2.72 16 2 N -0.59 -16.71 2.64 -832.25 -2.20 -18.90 16 3 C 0.59 18.38 7.67 86.75 0.67 19.05 16 4 O -0.57 -21.56 16.30 -3.96 -0.06 -21.63 16 5 C -0.02 -0.60 6.83 42.46 0.29 -0.31 16 6 C -0.17 -3.64 10.80 22.44 0.24 -3.40 16 7 C 0.05 0.87 7.44 83.56 0.62 1.50 16 8 Cl 0.03 0.28 28.67 -2.72 -0.08 0.20 16 9 N -0.27 -3.80 3.70 -359.16 -1.33 -5.13 16 10 C 0.07 0.26 11.14 127.77 1.42 1.68 16 11 N -0.23 -4.55 8.46 -48.18 -0.41 -4.96 16 12 C 0.15 5.00 2.30 43.91 0.10 5.10 16 13 H 0.09 3.26 5.13 -2.39 -0.01 3.25 16 14 C -0.10 -3.39 4.24 30.30 0.13 -3.26 16 15 C -0.13 -5.02 6.41 31.88 0.20 -4.82 16 16 C 0.13 5.96 4.19 87.60 0.37 6.33 16 17 N -0.61 -28.89 2.16 -707.81 -1.53 -30.42 16 18 C -0.25 -13.88 9.95 84.03 0.84 -13.04 16 19 H 0.05 2.77 8.06 -2.91 -0.02 2.75 16 20 C -0.02 -0.90 5.33 84.86 0.45 -0.45 16 21 N -0.95 -59.24 13.97 21.65 0.30 -58.94 16 22 Si 0.94 47.77 25.27 68.60 1.73 49.50 16 23 H -0.27 -13.41 6.52 99.48 0.65 -12.76 16 24 H -0.31 -15.81 7.11 99.48 0.71 -15.10 16 25 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 26 C 0.14 5.47 6.11 83.58 0.51 5.98 16 27 C -0.13 -4.20 4.43 28.36 0.13 -4.07 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.58 7.14 -2.39 -0.02 1.56 16 30 H 0.10 1.99 5.19 -2.39 -0.01 1.97 16 31 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 33 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 34 H 0.12 0.05 7.71 -2.39 -0.02 0.03 16 35 H 0.07 1.98 7.81 -2.39 -0.02 1.96 16 36 H 0.06 2.19 6.83 -2.39 -0.02 2.17 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 39 H 0.02 1.10 2.97 -2.39 -0.01 1.09 16 40 H 0.04 1.78 6.90 -2.39 -0.02 1.76 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.07 2.71 7.99 -2.39 -0.02 2.69 16 43 H 0.04 1.55 8.12 -2.39 -0.02 1.54 16 44 H 0.06 2.18 6.93 -2.39 -0.02 2.16 16 45 H 0.07 2.00 8.02 -2.39 -0.02 1.98 16 Total: -1.00 -73.09 363.64 4.51 -68.58 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.95 Total: 8.67 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 7.12 Total: 13.01 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -5.16 Total: -118.34 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.06 Total: -21.63 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.73 Total: 49.50 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -0.08 Total: 0.20 kcal Total: -73.09 4.51 -68.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948602435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.096 kcal (2) G-P(sol) polarization free energy of solvation -73.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds