Wall clock time and date at job start Sat Apr 11 2020 06:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34771 * 119.99860 * 2 1 4 4 O 1.21696 * 120.00032 * 186.45356 * 3 2 1 5 5 C 1.46671 * 120.00100 * 6.45318 * 3 2 1 6 6 C 1.36670 * 126.84062 * 357.30502 * 5 3 2 7 7 N 1.33301 * 107.82703 * 180.24594 * 6 5 3 8 8 C 1.31018 * 109.70474 * 359.55890 * 7 6 5 9 9 Cl 1.73609 * 125.43589 * 180.15378 * 8 7 6 10 10 N 1.34599 * 109.13121 * 0.45081 * 8 7 6 11 11 C 1.46496 * 126.49155 * 179.75190 * 10 8 7 12 12 C 1.46495 * 120.00048 * 179.97438 * 2 1 3 13 13 H 1.09003 * 109.48870 * 180.02562 * 12 2 1 14 14 C 1.52573 * 109.49045 * 60.00543 * 12 2 1 15 15 C 1.47089 * 114.32844 * 155.01825 * 14 12 2 16 16 C 1.54868 * 110.32261 * 62.80398 * 15 14 12 17 17 N 1.44576 * 109.60167 * 288.73767 * 16 15 14 18 18 C 1.36943 * 118.64305 * 270.72566 * 17 16 15 19 19 H 1.08000 * 119.99644 * 30.57561 * 18 17 16 20 20 C 1.38805 * 120.00344 * 210.58658 * 18 17 16 21 21 N 1.31624 * 119.99561 * 9.29098 * 20 18 17 22 22 Si 1.86800 * 120.00222 * 189.29943 * 20 18 17 23 23 H 1.48489 * 109.47292 * 89.99533 * 22 20 18 24 24 H 1.48497 * 109.46737 * 209.99757 * 22 20 18 25 25 H 1.48501 * 109.46911 * 329.99230 * 22 20 18 26 26 C 1.47608 * 122.71777 * 90.69858 * 17 16 15 27 27 C 1.50877 * 109.49130 * 300.12112 * 12 2 1 28 28 H 1.09008 * 109.46842 * 67.07239 * 1 2 3 29 29 H 1.09000 * 109.47080 * 187.06888 * 1 2 3 30 30 H 1.08994 * 109.47318 * 307.07653 * 1 2 3 31 31 H 1.07997 * 126.08345 * 359.97438 * 6 5 3 32 32 H 1.09002 * 109.47098 * 273.60333 * 11 10 8 33 33 H 1.09003 * 109.47801 * 33.60213 * 11 10 8 34 34 H 1.09008 * 109.47249 * 153.60659 * 11 10 8 35 35 H 1.09001 * 108.51082 * 276.27801 * 14 12 2 36 36 H 1.08995 * 108.51034 * 33.91907 * 14 12 2 37 37 H 1.08995 * 109.32885 * 183.06681 * 15 14 12 38 38 H 1.09004 * 109.32719 * 302.71830 * 15 14 12 39 39 H 1.09006 * 109.44608 * 48.77111 * 16 15 14 40 40 H 1.08993 * 109.45277 * 168.69452 * 16 15 14 41 41 H 0.97006 * 119.99959 * 180.02562 * 21 20 18 42 42 H 1.08993 * 108.94407 * 78.57714 * 26 17 16 43 43 H 1.09004 * 108.94571 * 197.21052 * 26 17 16 44 44 H 1.09000 * 109.37036 * 332.04090 * 27 12 2 45 45 H 1.09002 * 109.36966 * 91.65717 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3501 1.1705 -0.1185 5 6 1.4125 2.4333 0.1428 6 6 0.0585 2.5956 0.2328 7 7 -0.1895 3.9005 0.3460 8 6 0.9387 4.5666 0.3412 9 17 1.0899 6.2912 0.4707 10 7 1.9615 3.7010 0.2133 11 6 3.3862 4.0377 0.1598 12 6 2.1976 -1.2687 0.0006 13 1 3.2693 -1.0698 0.0009 14 6 1.8294 -2.0696 -1.2447 15 6 2.8558 -3.0331 -1.6710 16 6 3.0741 -4.1061 -0.5758 17 7 3.7530 -3.5140 0.5550 18 6 5.1223 -3.5146 0.5726 19 1 5.6742 -3.4701 -0.3547 20 6 5.8009 -3.5726 1.7821 21 7 5.1412 -3.8105 2.8960 22 14 7.6501 -3.3128 1.8290 23 1 7.9426 -1.8694 2.0180 24 1 8.2302 -4.0872 2.9554 25 1 8.2475 -3.7757 0.5506 26 6 3.0311 -2.9082 1.6911 27 6 1.8311 -2.0610 1.2312 28 1 -0.3633 0.4004 -0.9466 29 1 -0.3633 -1.0199 0.1265 30 1 -0.3633 0.6195 0.8198 31 1 -0.6795 1.8074 0.2113 32 1 3.6671 4.2663 -0.8683 33 1 3.5785 4.9057 0.7905 34 1 3.9732 3.1916 0.5173 35 1 0.9057 -2.6131 -1.0461 36 1 1.6503 -1.3731 -2.0637 37 1 2.5347 -3.5183 -2.5926 38 1 3.7935 -2.5063 -1.8484 39 1 2.1092 -4.4987 -0.2550 40 1 3.6800 -4.9177 -0.9785 41 1 5.6153 -3.8506 3.7413 42 1 2.6731 -3.7020 2.3466 43 1 3.7191 -2.2734 2.2496 44 1 1.5447 -1.3766 2.0297 45 1 0.9917 -2.7174 1.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948616723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:26 Heat of formation + Delta-G solvation = 73.066466 kcal Electronic energy + Delta-G solvation = -28592.745540 eV Core-core repulsion = 24674.287408 eV Total energy + Delta-G solvation = -3918.458132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -42.55533 -39.82283 -37.67173 -37.30344 -35.68333 -34.29651 -33.26356 -31.63507 -30.71640 -29.53759 -27.79784 -26.96860 -26.01073 -24.46211 -23.33019 -22.59897 -21.82323 -19.92765 -19.56729 -19.07266 -17.54841 -16.79867 -16.68160 -16.53649 -16.11473 -15.33691 -14.93314 -14.77404 -14.48595 -14.37841 -13.88363 -13.59856 -13.44198 -13.26039 -13.13578 -12.97095 -12.84256 -12.41319 -12.15174 -11.99102 -11.94252 -11.56849 -11.44600 -11.09220 -10.84840 -10.81271 -10.59629 -10.39705 -10.30228 -10.10992 -10.04124 -9.97213 -9.76273 -9.68161 -9.58531 -8.81417 -8.50808 -8.38234 -6.59028 -5.75511 -3.24687 0.91103 1.00482 2.37256 2.43304 3.14127 3.22579 3.40432 3.46871 3.47868 4.28194 4.46565 4.52445 4.59837 4.94529 4.97196 5.01541 5.14632 5.24210 5.32485 5.37909 5.51292 5.52537 5.58593 5.69438 5.77742 5.92513 6.04872 6.08601 6.17457 6.24282 6.40387 6.46800 6.51561 6.60063 6.65584 6.68384 6.85602 6.95369 7.06838 7.37448 7.41457 7.45917 7.71807 7.85487 8.17251 8.52757 9.27781 9.92506 10.38432 11.31725 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014792 B = 0.003209 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.446926 B = 8722.104536 C = 9860.617675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.593 5.593 3 C 0.587 3.413 4 O -0.533 6.533 5 C -0.057 4.057 6 C 0.018 3.982 7 N -0.470 5.470 8 C 0.254 3.746 9 Cl 0.037 6.963 10 N -0.412 5.412 11 C 0.059 3.941 12 C 0.152 3.848 13 H 0.118 0.882 14 C -0.106 4.106 15 C -0.146 4.146 16 C 0.157 3.843 17 N -0.591 5.591 18 C -0.257 4.257 19 H 0.064 0.936 20 C 0.008 3.992 21 N -0.907 5.907 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.184 3.816 27 C -0.150 4.150 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.212 0.788 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.032 0.968 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.029 0.971 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.561 14.116 -5.896 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.324 5.324 3 C 0.375 3.625 4 O -0.411 6.411 5 C -0.174 4.174 6 C -0.135 4.135 7 N -0.192 5.192 8 C -0.032 4.032 9 Cl 0.065 6.935 10 N -0.095 5.095 11 C -0.082 4.082 12 C 0.051 3.949 13 H 0.136 0.864 14 C -0.144 4.144 15 C -0.187 4.187 16 C 0.029 3.971 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.551 5.551 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.058 3.942 27 C -0.190 4.190 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.228 0.772 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.134 0.866 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.413 14.633 -5.699 19.413 hybrid contribution 1.670 0.219 0.052 1.685 sum -9.742 14.852 -5.647 18.639 Atomic orbital electron populations 1.22406 0.80463 1.04179 1.01480 1.47801 1.06717 1.05766 1.72138 1.16669 0.86353 0.81997 0.77527 1.90840 1.13339 1.86740 1.50158 1.20952 0.94198 0.85759 1.16494 1.24005 0.93580 0.93382 1.02560 1.70116 1.24033 1.04883 1.20158 1.23232 0.84420 0.86981 1.08592 1.98423 1.97420 1.01062 1.96600 1.45049 1.08478 1.05040 1.50969 1.22467 0.76644 1.04676 1.04447 1.20796 0.98854 0.80044 0.95193 0.86406 1.20634 0.99427 0.97746 0.96593 1.21459 0.98853 0.99024 0.99364 1.20713 0.95479 0.92830 0.88081 1.43636 1.02752 1.65396 1.19511 1.19183 0.81939 1.45192 0.92380 0.91869 1.25137 0.97808 0.99802 0.96315 1.70008 1.34547 1.52694 0.97843 0.86302 0.85611 0.77750 0.77174 1.21431 1.21758 1.20418 1.20943 0.90265 0.94247 0.88702 1.22494 1.01255 0.98749 0.96460 0.91726 0.89688 0.90495 0.77248 0.89512 0.89293 0.86568 0.92994 0.93544 0.93078 0.91935 0.94986 0.93544 0.93713 0.95250 0.90711 0.92359 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 7.87 59.85 0.47 1.03 16 2 N -0.59 -8.54 2.60 -176.96 -0.46 -9.00 16 3 C 0.59 9.44 7.63 -12.86 -0.10 9.34 16 4 O -0.53 -10.41 14.18 5.19 0.07 -10.34 16 5 C -0.06 -0.78 6.85 -82.10 -0.56 -1.34 16 6 C 0.02 0.21 9.94 -17.48 -0.17 0.04 16 7 N -0.47 -6.22 11.21 -11.49 -0.13 -6.35 16 8 C 0.25 3.15 8.48 -90.34 -0.77 2.38 16 9 Cl 0.04 0.36 28.82 -51.86 -1.49 -1.14 16 10 N -0.41 -5.27 3.18 -118.35 -0.38 -5.65 16 11 C 0.06 0.62 10.54 59.84 0.63 1.25 16 12 C 0.15 2.62 2.08 -69.22 -0.14 2.47 16 13 H 0.12 2.59 6.26 -51.93 -0.33 2.27 16 14 C -0.11 -1.63 4.21 -29.79 -0.13 -1.76 16 15 C -0.15 -2.51 5.74 -28.58 -0.16 -2.67 16 16 C 0.16 3.14 5.66 -4.08 -0.02 3.12 16 17 N -0.59 -14.18 2.26 -172.10 -0.39 -14.57 16 18 C -0.26 -6.92 9.42 -15.06 -0.14 -7.07 16 19 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 20 C 0.01 0.22 5.01 -17.43 -0.09 0.13 16 21 N -0.91 -25.95 10.91 55.49 0.61 -25.35 16 22 Si 0.90 21.94 29.56 -169.99 -5.03 16.91 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.18 4.24 4.63 -2.95 -0.01 4.22 16 27 C -0.15 -2.64 4.55 -27.32 -0.12 -2.77 16 28 H 0.06 0.52 7.49 -51.92 -0.39 0.13 16 29 H 0.08 0.76 7.13 -51.93 -0.37 0.39 16 30 H 0.08 0.64 5.35 -51.93 -0.28 0.36 16 31 H 0.21 1.85 4.09 -52.49 -0.21 1.63 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 34 H 0.12 1.47 6.36 -51.92 -0.33 1.14 16 35 H 0.05 0.72 7.21 -51.93 -0.37 0.34 16 36 H 0.05 0.68 8.04 -51.93 -0.42 0.26 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.05 0.95 7.99 -51.93 -0.41 0.54 16 41 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.03 0.73 7.99 -51.93 -0.41 0.32 16 43 H 0.07 1.98 6.45 -51.93 -0.34 1.65 16 44 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 45 H 0.05 0.81 7.22 -51.93 -0.37 0.43 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -31.89 362.76 -9.35 -41.24 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.30 Total: 0.39 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: -1.32 Total: 8.38 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: -0.75 Total: -60.91 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.49 Total: -1.14 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.89 -9.35 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948616723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.307 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds