Wall clock time and date at job start Sat Apr 11 2020 06:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.46834 * 2 1 4 4 C 1.34782 * 119.99589 * 84.86997 * 3 2 1 5 5 O 1.21619 * 119.99514 * 185.17688 * 4 3 2 6 6 C 1.47297 * 119.99808 * 5.17694 * 4 3 2 7 7 C 1.41343 * 126.43934 * 344.12864 * 6 4 3 8 8 N 1.30418 * 108.04713 * 180.02562 * 7 6 4 9 9 N 1.39924 * 108.96128 * 0.02562 * 8 7 6 10 10 C 1.46497 * 125.75109 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.46920 * 60.01958 * 10 9 8 12 12 C 1.53002 * 109.47011 * 300.02411 * 10 9 8 13 13 C 1.34347 * 108.50195 * 0.22556 * 9 8 7 14 14 Cl 1.73600 * 126.32061 * 179.78172 * 13 9 8 15 15 C 1.46490 * 120.00265 * 264.86709 * 3 2 1 16 16 C 1.53944 * 113.74343 * 222.44370 * 15 3 2 17 17 N 1.47812 * 86.03984 * 222.08234 * 16 15 3 18 18 C 1.36939 * 134.45933 * 204.64125 * 17 16 15 19 19 H 1.08001 * 119.99702 * 179.86942 * 18 17 16 20 20 C 1.38804 * 119.99821 * 359.86796 * 18 17 16 21 21 N 1.31624 * 120.00258 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99980 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46894 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47194 * 120.00250 * 22 20 18 25 25 H 1.48499 * 109.47687 * 240.00571 * 22 20 18 26 26 C 1.47583 * 91.04667 * 24.54910 * 17 16 15 27 27 H 1.09000 * 109.46786 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47256 * 299.99418 * 1 2 3 29 29 H 1.08998 * 109.47015 * 60.00115 * 1 2 3 30 30 H 1.08996 * 109.47256 * 240.00582 * 2 1 3 31 31 H 1.08999 * 109.47538 * 119.99904 * 2 1 3 32 32 H 1.07996 * 125.97276 * 0.02562 * 7 6 4 33 33 H 1.08997 * 109.47448 * 180.02562 * 10 9 8 34 34 H 1.09006 * 109.47178 * 179.97438 * 11 10 9 35 35 H 1.09003 * 109.46920 * 60.00700 * 11 10 9 36 36 H 1.08997 * 109.47816 * 300.00169 * 11 10 9 37 37 H 1.08997 * 109.46721 * 179.97438 * 12 10 9 38 38 H 1.08995 * 109.46981 * 299.99765 * 12 10 9 39 39 H 1.09000 * 109.46882 * 59.99740 * 12 10 9 40 40 H 1.09000 * 112.94469 * 354.03996 * 15 3 2 41 41 H 1.08996 * 113.76859 * 336.35292 * 16 15 3 42 42 H 1.09002 * 113.76929 * 107.74883 * 16 15 3 43 43 H 0.97003 * 119.99850 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.76890 * 221.14787 * 26 17 16 45 45 H 1.09009 * 113.76736 * 89.75378 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1445 2.0514 1.1626 5 8 2.4591 3.2262 1.1562 6 6 1.9012 1.3609 2.4408 7 6 1.2400 0.1237 2.6141 8 7 1.2243 -0.1509 3.8889 9 7 1.8642 0.8811 4.5842 10 6 2.0532 0.9466 6.0355 11 6 2.8704 -0.2612 6.4983 12 6 0.6892 0.9353 6.7284 13 6 2.2712 1.8044 3.6972 14 17 3.1108 3.2797 4.0608 15 6 2.3694 2.0341 -1.2635 16 6 3.6673 2.8592 -1.1952 17 7 2.9415 3.8759 -1.9854 18 6 3.3207 4.8799 -2.8359 19 1 2.5724 5.5028 -3.3035 20 6 4.6665 5.0970 -3.0970 21 7 5.5783 4.3376 -2.5275 22 14 5.1837 6.4662 -4.2577 23 1 3.9770 7.1690 -4.7629 24 1 6.0496 7.4298 -3.5319 25 1 5.9356 5.8887 -5.4007 26 6 1.6448 3.3730 -1.4918 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 0.8211 -0.4872 1.8282 33 1 2.5833 1.8638 6.2918 34 1 3.0114 -0.2123 7.5781 35 1 3.8422 -0.2531 6.0047 36 1 2.3403 -1.1785 6.2421 37 1 0.8299 0.9836 7.8082 38 1 0.1070 1.7957 6.3986 39 1 0.1590 0.0180 6.4720 40 1 2.3231 1.3589 -2.1179 41 1 3.9265 3.1877 -0.1888 42 1 4.5049 2.4052 -1.7248 43 1 6.5189 4.4896 -2.7098 44 1 0.8705 3.3285 -2.2577 45 1 1.3086 3.8529 -0.5726 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950991777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:49 Heat of formation + Delta-G solvation = 104.685909 kcal Electronic energy + Delta-G solvation = -28310.685208 eV Core-core repulsion = 24393.598198 eV Total energy + Delta-G solvation = -3917.087010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.74315 -41.11026 -38.45227 -38.05750 -37.06977 -36.36544 -34.16535 -32.00139 -31.27026 -31.02687 -29.12828 -28.25994 -26.49621 -25.80187 -24.43621 -24.19563 -23.10526 -21.71484 -21.32022 -19.82975 -18.71589 -18.36553 -17.75131 -17.13750 -16.77371 -16.75392 -16.00603 -15.88140 -15.77278 -15.52418 -15.10084 -14.96610 -14.35674 -14.08866 -13.96798 -13.72998 -13.45685 -13.36563 -13.28026 -13.13854 -13.06271 -13.02151 -12.92700 -12.76104 -12.67119 -12.47865 -12.37882 -12.11045 -11.99652 -11.90550 -11.85259 -11.67878 -11.42051 -10.96480 -10.51044 -10.42400 -9.83321 -9.37265 -8.82632 -7.86743 -5.19480 0.16297 0.22856 1.05228 1.41890 1.43859 1.46808 1.56760 2.05229 2.37148 2.51907 3.21125 3.32485 3.57172 3.72785 3.74498 3.83935 3.91716 3.97537 4.04517 4.12296 4.21516 4.38974 4.45183 4.60599 4.64968 4.65562 4.69161 4.75675 4.76074 4.91003 4.95840 5.03325 5.08651 5.11958 5.18341 5.28279 5.29543 5.38262 5.50006 5.53201 5.55321 5.95046 6.00030 6.28532 6.61795 6.94955 7.40198 7.63675 8.62463 9.30671 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.003222 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.795898 B = 8687.189070 C = 9758.740898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.076 3.924 3 N -0.593 5.593 4 C 0.577 3.423 5 O -0.557 6.557 6 C -0.282 4.282 7 C 0.073 3.927 8 N -0.275 5.275 9 N -0.339 5.339 10 C 0.131 3.869 11 C -0.154 4.154 12 C -0.153 4.153 13 C 0.167 3.833 14 Cl 0.017 6.983 15 C 0.131 3.869 16 C 0.154 3.846 17 N -0.633 5.633 18 C -0.231 4.231 19 H 0.082 0.918 20 C -0.071 4.071 21 N -0.953 5.953 22 Si 0.982 3.018 23 H -0.265 1.265 24 H -0.296 1.296 25 H -0.286 1.286 26 C 0.114 3.886 27 H 0.105 0.895 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.247 0.753 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.052 0.948 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.130 0.870 41 H 0.025 0.975 42 H 0.035 0.965 43 H 0.247 0.753 44 H 0.055 0.945 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -16.345 19.009 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.045 4.045 3 N -0.325 5.325 4 C 0.367 3.633 5 O -0.436 6.436 6 C -0.298 4.298 7 C -0.112 4.112 8 N -0.095 5.095 9 N -0.122 5.122 10 C 0.032 3.968 11 C -0.211 4.211 12 C -0.211 4.211 13 C 0.008 3.992 14 Cl 0.045 6.955 15 C 0.026 3.974 16 C 0.028 3.972 17 N -0.359 5.359 18 C -0.359 4.359 19 H 0.100 0.900 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.810 3.190 23 H -0.189 1.189 24 H -0.223 1.223 25 H -0.213 1.213 26 C -0.012 4.012 27 H 0.124 0.876 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.262 0.738 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.148 0.852 41 H 0.043 0.957 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.073 0.927 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.586 -16.253 19.924 28.203 hybrid contribution 1.159 2.096 -1.131 2.648 sum -10.427 -14.158 18.794 25.736 Atomic orbital electron populations 1.22400 0.94314 1.04380 1.02676 1.22472 0.95606 0.80986 1.05433 1.47800 1.64914 1.15031 1.04792 1.17507 0.76923 0.85595 0.83318 1.90863 1.48231 1.17099 1.87383 1.19947 1.16820 1.01306 0.91744 1.25553 0.96690 0.94056 0.94929 1.77231 1.17542 1.08902 1.05857 1.49245 1.41699 1.13430 1.07832 1.21995 1.00127 1.02569 0.72105 1.22113 0.99015 0.96406 1.03591 1.22112 0.93790 1.03061 1.02142 1.22178 0.97908 0.88265 0.90872 1.98457 1.74331 1.28190 1.94515 1.23383 0.95543 0.92688 0.85740 1.22528 0.93830 0.87358 0.93495 1.46110 1.03371 1.37099 1.49337 1.19451 0.91890 1.07741 1.16836 0.90030 1.25675 0.95557 1.02351 1.02769 1.70067 0.99678 1.42277 1.48220 0.84962 0.77992 0.78262 0.77811 1.18898 1.22345 1.21273 1.22981 0.89578 0.92359 0.96261 0.87618 0.92662 0.92189 0.87984 0.88047 0.73763 0.87269 0.87450 0.92927 0.91122 0.87437 0.92931 0.91157 0.85188 0.95697 0.94683 0.94455 0.92658 0.94774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 8.79 71.98 0.63 -2.02 16 2 C 0.08 1.46 5.65 86.38 0.49 1.95 16 3 N -0.59 -18.85 2.74 -807.51 -2.21 -21.06 16 4 C 0.58 21.22 7.03 86.62 0.61 21.83 16 5 O -0.56 -26.13 11.52 -4.09 -0.05 -26.18 16 6 C -0.28 -8.32 5.92 -20.12 -0.12 -8.44 16 7 C 0.07 1.57 8.71 85.67 0.75 2.31 16 8 N -0.27 -5.96 12.33 -56.26 -0.69 -6.66 16 9 N -0.34 -7.52 3.25 -315.64 -1.03 -8.55 16 10 C 0.13 1.96 3.66 44.99 0.16 2.13 16 11 C -0.15 -1.76 9.45 71.98 0.68 -1.08 16 12 C -0.15 -1.74 9.44 71.98 0.68 -1.06 16 13 C 0.17 4.73 7.52 84.32 0.63 5.37 16 14 Cl 0.02 0.50 27.14 -2.72 -0.07 0.43 16 15 C 0.13 5.16 4.60 46.75 0.21 5.38 16 16 C 0.15 8.23 6.78 86.44 0.59 8.81 16 17 N -0.63 -35.97 3.70 -716.64 -2.65 -38.62 16 18 C -0.23 -14.04 10.70 84.03 0.90 -13.14 16 19 H 0.08 4.75 7.83 -2.91 -0.02 4.73 16 20 C -0.07 -4.33 5.50 84.86 0.47 -3.87 16 21 N -0.95 -61.59 11.39 21.65 0.25 -61.34 16 22 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 23 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 C 0.11 5.23 8.27 86.48 0.72 5.95 16 27 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.05 0.93 6.55 -2.39 -0.02 0.91 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.10 1.62 7.88 -2.39 -0.02 1.60 16 31 H 0.10 1.66 4.56 -2.39 -0.01 1.64 16 32 H 0.25 3.59 3.43 -2.91 -0.01 3.58 16 33 H 0.11 1.53 7.23 -2.39 -0.02 1.51 16 34 H 0.11 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.13 4.45 7.91 -2.39 -0.02 4.43 16 41 H 0.03 1.50 5.68 -2.39 -0.01 1.49 16 42 H 0.03 2.04 7.16 -2.39 -0.02 2.03 16 43 H 0.25 15.36 8.31 -92.71 -0.77 14.58 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.03 1.71 6.33 -2.38 -0.02 1.69 16 Total: -1.00 -83.32 371.12 3.98 -79.34 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 1.02 Total: 7.86 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 7.40 Total: 24.13 kcal Atomic # 7 Polarization: -129.89 SS G_CDS: -6.34 Total: -136.23 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.05 Total: -26.18 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -0.07 Total: 0.43 kcal Total: -83.32 3.98 -79.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950991777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.025 kcal (2) G-P(sol) polarization free energy of solvation -83.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds