Wall clock time and date at job start Sat Apr 11 2020 05:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86808 * 120.00082 * 2 1 4 4 H 1.48495 * 109.47075 * 265.08020 * 3 2 1 5 5 H 1.48500 * 109.46844 * 145.07936 * 3 2 1 6 6 H 1.48500 * 109.46945 * 25.08017 * 3 2 1 7 7 C 1.38815 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99474 * 331.97291 * 7 2 1 9 9 N 1.36930 * 120.00175 * 151.96845 * 7 2 1 10 10 C 1.47024 * 125.64985 * 352.06808 * 9 7 2 11 11 C 1.54333 * 107.26812 * 178.85015 * 10 9 7 12 12 H 1.09002 * 110.85086 * 219.67272 * 11 10 9 13 13 O 1.42897 * 110.66932 * 96.51903 * 11 10 9 14 14 C 1.55163 * 103.01920 * 338.13793 * 11 10 9 15 15 H 1.08991 * 111.00505 * 277.23588 * 14 11 10 16 16 C 1.52999 * 111.03799 * 153.39629 * 14 11 10 17 17 N 1.46497 * 109.47159 * 181.33356 * 16 14 11 18 18 C 1.34779 * 119.99889 * 179.97438 * 17 16 14 19 19 O 1.21604 * 120.00384 * 359.97438 * 18 17 16 20 20 C 1.47461 * 119.99824 * 179.97438 * 18 17 16 21 21 C 1.38716 * 120.37897 * 5.81273 * 20 18 17 22 22 C 1.38907 * 120.65090 * 179.97438 * 21 20 18 23 23 C 1.36285 * 121.17647 * 0.02562 * 22 21 20 24 24 C 1.40556 * 120.12530 * 0.02562 * 23 22 21 25 25 C 1.40579 * 121.16809 * 180.02562 * 24 23 22 26 26 C 1.36143 * 119.65369 * 179.11729 * 25 24 23 27 27 C 1.39305 * 120.94722 * 0.89952 * 26 25 24 28 28 C 1.36257 * 120.93135 * 359.38118 * 27 26 25 29 29 C 1.40148 * 119.69025 * 0.02562 * 28 27 26 30 30 C 1.47433 * 125.64921 * 172.37470 * 9 7 2 31 31 H 0.96999 * 119.99792 * 185.00906 * 1 2 3 32 32 H 1.08999 * 109.88146 * 298.39293 * 10 9 7 33 33 H 1.08995 * 109.88489 * 59.55806 * 10 9 7 34 34 H 0.96705 * 114.00190 * 66.41468 * 13 11 10 35 35 H 1.09002 * 109.47232 * 301.33239 * 16 14 11 36 36 H 1.08998 * 109.46839 * 61.32911 * 16 14 11 37 37 H 0.96998 * 120.00416 * 359.97438 * 17 16 14 38 38 H 1.08001 * 119.67240 * 359.95336 * 21 20 18 39 39 H 1.07996 * 119.41167 * 180.02562 * 22 21 20 40 40 H 1.07996 * 119.93369 * 179.97438 * 23 22 21 41 41 H 1.08005 * 120.17200 * 359.96224 * 25 24 23 42 42 H 1.07999 * 119.52743 * 180.30440 * 26 25 24 43 43 H 1.07993 * 119.53773 * 179.40501 * 27 26 25 44 44 H 1.07999 * 120.15954 * 180.02562 * 28 27 26 45 45 H 1.09004 * 110.36281 * 322.92874 * 30 9 7 46 46 H 1.08996 * 110.36443 * 85.13915 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6017 1.9864 -1.3949 5 1 3.4919 1.4724 0.8015 6 1 1.3995 2.6805 0.5935 7 6 2.0103 -1.2021 -0.0005 8 1 1.5653 -2.0828 0.4386 9 7 3.2591 -1.2714 -0.5579 10 6 3.9134 -0.2048 -1.3297 11 6 5.3125 -0.7200 -1.7285 12 1 6.0556 0.0733 -1.6478 13 8 5.2930 -1.2594 -3.0517 14 6 5.5847 -1.8355 -0.6849 15 1 5.9643 -1.4152 0.2462 16 6 6.5479 -2.8856 -1.2420 17 7 6.7556 -3.9367 -0.2429 18 6 7.5717 -4.9740 -0.5157 19 8 8.1352 -5.0379 -1.5914 20 6 7.7812 -6.0317 0.4902 21 6 7.0524 -6.0315 1.6705 22 6 7.2449 -7.0254 2.6217 23 6 8.1508 -8.0243 2.4250 24 6 8.9122 -8.0637 1.2443 25 6 9.8524 -9.0842 1.0185 26 6 10.5604 -9.1026 -0.1442 27 6 10.3807 -8.1130 -1.1081 28 6 9.4822 -7.1062 -0.9192 29 6 8.7269 -7.0622 0.2605 30 6 4.1679 -2.4303 -0.4887 31 1 -0.4850 -0.8368 0.0733 32 1 3.3297 0.0178 -2.2229 33 1 4.0113 0.6905 -0.7157 34 1 5.1265 -0.6027 -3.7417 35 1 6.1253 -3.3228 -2.1467 36 1 7.5022 -2.4146 -1.4778 37 1 6.3059 -3.8860 0.6151 38 1 6.3285 -5.2509 1.8518 39 1 6.6663 -7.0060 3.5334 40 1 8.2844 -8.7866 3.1783 41 1 10.0023 -9.8574 1.7576 42 1 11.2785 -9.8903 -0.3177 43 1 10.9614 -8.1444 -2.0181 44 1 9.3527 -6.3457 -1.6750 45 1 4.0913 -2.9148 0.4847 46 1 3.9389 -3.1398 -1.2839 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958639595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:36 Heat of formation + Delta-G solvation = 0.852858 kcal Electronic energy + Delta-G solvation = -28737.502141 eV Core-core repulsion = 24786.052690 eV Total energy + Delta-G solvation = -3951.449451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96868 -39.41675 -38.53127 -36.67342 -35.22478 -34.83657 -32.92852 -32.33976 -30.69337 -30.41633 -29.27145 -28.10240 -25.92852 -24.33352 -23.35843 -23.06123 -22.40911 -21.12021 -20.44668 -19.85526 -17.97596 -17.80402 -17.64572 -16.84880 -16.78660 -15.98842 -15.82254 -15.53932 -15.31130 -14.81595 -14.44380 -14.37060 -14.03713 -13.69689 -13.65032 -13.50723 -13.29495 -13.06285 -12.95952 -12.86703 -12.41121 -12.29088 -11.87119 -11.63126 -11.57539 -11.24300 -11.18421 -11.16503 -10.86295 -10.60148 -10.47369 -10.14626 -9.87406 -9.61617 -9.52349 -9.20443 -9.08222 -8.89366 -8.46655 -8.13218 -7.16988 -6.39450 -3.21726 0.02351 0.76177 1.59999 2.53954 3.05926 3.09917 3.33357 3.42951 3.61723 3.94106 4.33259 4.38456 4.46872 4.53449 4.53497 4.69754 4.73334 4.81976 4.86384 5.04109 5.06521 5.11862 5.13286 5.14346 5.22427 5.40904 5.46225 5.57201 5.64947 5.69057 5.76957 5.82451 5.92792 5.97043 6.03650 6.06842 6.12007 6.28447 6.31616 6.33983 6.36657 6.48365 6.55889 6.58699 6.74049 6.79994 7.42456 7.62355 7.88139 8.14685 8.28141 8.98271 9.54272 10.20162 11.09607 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002445 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.340681 B =11447.009680 C =12438.412705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.021 4.021 3 Si 1.069 2.931 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.299 1.299 7 C -0.333 4.333 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.088 3.912 11 C 0.103 3.897 12 H 0.066 0.934 13 O -0.557 6.557 14 C -0.114 4.114 15 H 0.093 0.907 16 C 0.140 3.860 17 N -0.719 5.719 18 C 0.560 3.440 19 O -0.535 6.535 20 C -0.121 4.121 21 C -0.074 4.074 22 C -0.126 4.126 23 C -0.080 4.080 24 C -0.060 4.060 25 C -0.114 4.114 26 C -0.114 4.114 27 C -0.121 4.121 28 C -0.111 4.111 29 C -0.014 4.014 30 C 0.145 3.855 31 H 0.264 0.736 32 H 0.047 0.953 33 H 0.034 0.966 34 H 0.378 0.622 35 H 0.084 0.916 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.171 0.829 45 H 0.041 0.959 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.202 -14.113 2.829 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.222 4.222 3 Si 0.903 3.097 4 H -0.223 1.223 5 H -0.222 1.222 6 H -0.227 1.227 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.037 4.037 11 C 0.043 3.957 12 H 0.084 0.916 13 O -0.362 6.362 14 C -0.134 4.134 15 H 0.111 0.889 16 C 0.017 3.983 17 N -0.370 5.370 18 C 0.348 3.652 19 O -0.415 6.415 20 C -0.124 4.124 21 C -0.093 4.093 22 C -0.144 4.144 23 C -0.099 4.099 24 C -0.061 4.061 25 C -0.132 4.132 26 C -0.132 4.132 27 C -0.139 4.139 28 C -0.128 4.128 29 C -0.015 4.015 30 C 0.019 3.981 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.225 0.775 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.236 0.764 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.187 0.813 45 H 0.060 0.940 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 21.385 -13.038 2.364 25.157 hybrid contribution -0.246 -1.089 0.419 1.192 sum 21.138 -14.127 2.783 25.576 Atomic orbital electron populations 1.70914 1.05858 1.30094 1.48707 1.25762 0.96291 1.00824 0.99287 0.83714 0.73769 0.76113 0.76073 1.22277 1.22201 1.22650 1.19993 0.89973 0.97480 1.38539 0.90499 1.44658 1.16039 1.11507 1.61088 1.22405 0.92355 0.92858 0.96102 1.22677 0.96051 0.94304 0.82714 0.91625 1.86459 1.94923 1.39448 1.15419 1.22768 0.97108 0.95648 0.97876 0.88921 1.21192 0.98655 0.87095 0.91373 1.46023 1.47306 1.23715 1.19925 1.18069 0.79011 0.81450 0.86664 1.90555 1.48786 1.77132 1.25000 1.19952 0.99868 0.96908 0.95681 1.21424 0.97300 0.98156 0.92378 1.20786 0.99147 0.94818 0.99684 1.21224 0.94641 0.98029 0.95957 1.18091 0.97738 0.95675 0.94547 1.20979 0.96368 0.97826 0.97992 1.20932 0.99498 0.98779 0.94028 1.21048 0.98733 0.94808 0.99343 1.22270 0.93665 0.99405 0.97473 1.17884 0.95579 0.93424 0.94640 1.21643 0.86597 0.91179 0.98669 0.92605 0.93538 0.94841 0.77499 0.89779 0.91411 0.76399 0.85197 0.85089 0.85189 0.85555 0.86059 0.85903 0.81267 0.94037 0.94949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.36 13.70 55.49 0.76 -27.60 16 2 C -0.02 -0.60 5.43 -17.43 -0.09 -0.70 16 3 Si 1.07 26.18 24.67 -169.99 -4.19 21.98 16 4 H -0.29 -6.76 6.73 56.52 0.38 -6.37 16 5 H -0.29 -6.77 6.70 56.52 0.38 -6.39 16 6 H -0.30 -7.43 7.11 56.52 0.40 -7.02 16 7 C -0.33 -9.39 10.43 -15.06 -0.16 -9.55 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 N -0.61 -14.54 3.31 -170.06 -0.56 -15.10 16 10 C 0.09 1.85 4.71 -3.06 -0.01 1.83 16 11 C 0.10 1.65 4.09 -24.89 -0.10 1.55 16 12 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 13 O -0.56 -8.51 12.09 -35.23 -0.43 -8.94 16 14 C -0.11 -1.77 3.03 -88.47 -0.27 -2.04 16 15 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 16 C 0.14 1.99 4.74 -4.04 -0.02 1.97 16 17 N -0.72 -9.20 5.36 -61.37 -0.33 -9.53 16 18 C 0.56 7.88 7.72 -12.50 -0.10 7.78 16 19 O -0.54 -8.85 13.39 5.27 0.07 -8.78 16 20 C -0.12 -1.50 5.90 -104.63 -0.62 -2.12 16 21 C -0.07 -0.74 9.51 -39.16 -0.37 -1.11 16 22 C -0.13 -1.08 9.92 -40.04 -0.40 -1.48 16 23 C -0.08 -0.69 9.75 -39.41 -0.38 -1.08 16 24 C -0.06 -0.64 5.74 -106.86 -0.61 -1.25 16 25 C -0.11 -1.01 9.77 -39.45 -0.39 -1.39 16 26 C -0.11 -1.00 9.95 -39.94 -0.40 -1.40 16 27 C -0.12 -1.24 9.95 -39.90 -0.40 -1.63 16 28 C -0.11 -1.40 9.21 -39.58 -0.36 -1.77 16 29 C -0.01 -0.18 5.76 -106.56 -0.61 -0.80 16 30 C 0.15 2.81 6.40 -2.52 -0.02 2.80 16 31 H 0.26 8.09 8.73 -40.82 -0.36 7.74 16 32 H 0.05 1.03 7.73 -51.93 -0.40 0.63 16 33 H 0.03 0.73 3.68 -51.93 -0.19 0.54 16 34 H 0.38 4.25 9.12 45.56 0.42 4.66 16 35 H 0.08 1.38 7.43 -51.93 -0.39 0.99 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.40 4.35 6.40 -40.82 -0.26 4.09 16 38 H 0.13 1.06 6.42 -52.49 -0.34 0.72 16 39 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 44 H 0.17 2.39 4.87 -52.60 -0.26 2.13 16 45 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.03 0.67 8.01 -51.93 -0.42 0.26 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -35.09 368.35 -9.70 -44.79 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -5.26 Total: 8.00 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -5.31 Total: -10.38 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.13 Total: -52.23 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.36 Total: -17.72 kcal Atomic # 14 Polarization: 26.18 SS G_CDS: -4.19 Total: 21.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.09 -9.70 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958639595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.643 kcal (2) G-P(sol) polarization free energy of solvation -35.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds