Wall clock time and date at job start Sat Apr 11 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00067 * 2 1 4 4 O 1.21646 * 120.00068 * 185.20126 * 3 2 1 5 5 C 1.47031 * 120.00168 * 5.19680 * 3 2 1 6 6 C 1.38543 * 126.90761 * 90.13361 * 5 3 2 7 7 Cl 1.73597 * 127.33364 * 359.97438 * 6 5 3 8 8 C 1.39811 * 105.32673 * 179.97438 * 6 5 3 9 9 N 1.30835 * 107.87694 * 359.97438 * 8 6 5 10 10 N 1.28431 * 110.97974 * 359.74200 * 9 8 6 11 11 C 1.46504 * 125.18512 * 180.26053 * 10 9 8 12 12 C 1.46496 * 119.99812 * 179.97438 * 2 1 3 13 13 C 1.53001 * 109.47395 * 239.05025 * 12 2 1 14 14 C 1.52995 * 109.47001 * 59.99899 * 13 12 2 15 15 C 1.53006 * 109.46940 * 60.00416 * 14 13 12 16 16 N 1.46504 * 109.46999 * 179.97438 * 15 14 13 17 17 C 1.36929 * 120.00193 * 274.99682 * 16 15 14 18 18 H 1.08007 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00047 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47015 * 59.99923 * 21 19 17 23 23 H 1.48498 * 109.46748 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47350 * 299.99837 * 21 19 17 25 25 C 1.53001 * 109.46934 * 299.99625 * 15 14 13 26 26 C 1.52996 * 109.47444 * 359.05087 * 12 2 1 27 27 H 1.09001 * 109.47240 * 275.97170 * 1 2 3 28 28 H 1.08999 * 109.46743 * 35.96963 * 1 2 3 29 29 H 1.09002 * 109.47182 * 155.96887 * 1 2 3 30 30 H 1.07996 * 126.05727 * 179.97438 * 8 6 5 31 31 H 1.09007 * 109.46733 * 275.17375 * 11 10 9 32 32 H 1.08999 * 109.47362 * 35.17558 * 11 10 9 33 33 H 1.08998 * 109.47106 * 155.18137 * 11 10 9 34 34 H 1.08997 * 109.46770 * 119.05090 * 12 2 1 35 35 H 1.08999 * 109.47142 * 180.02562 * 13 12 2 36 36 H 1.09002 * 109.46913 * 300.00121 * 13 12 2 37 37 H 1.08999 * 109.47385 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47435 * 300.00142 * 14 13 12 39 39 H 1.08999 * 109.47280 * 59.99631 * 15 14 13 40 40 H 0.97007 * 119.99821 * 94.99990 * 16 15 14 41 41 H 0.96993 * 120.00500 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47142 * 300.00090 * 25 15 14 43 43 H 1.09002 * 109.46913 * 180.02562 * 25 15 14 44 44 H 1.09004 * 109.46952 * 59.99726 * 26 12 2 45 45 H 1.08999 * 109.47390 * 179.97438 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1693 -0.0955 5 6 1.4083 2.4379 0.1153 6 6 1.0841 3.1081 1.2837 7 17 1.4522 2.6266 2.9104 8 6 0.3972 4.2547 0.8736 9 7 0.3349 4.2397 -0.4332 10 7 0.9183 3.1993 -0.9094 11 6 1.0368 2.8755 -2.3333 12 6 2.1975 -1.2687 0.0006 13 6 3.0950 -1.3390 1.2377 14 6 2.2334 -1.2470 2.4986 15 6 1.2393 -2.4098 2.5231 16 7 0.4147 -2.3220 3.7308 17 6 0.8662 -2.8554 4.9084 18 1 1.8304 -3.3405 4.9469 19 6 0.0846 -2.7727 6.0526 20 7 -1.0902 -2.1812 6.0058 21 14 0.7009 -3.4997 7.6592 22 1 1.9735 -2.8392 8.0455 23 1 -0.3125 -3.2809 8.7224 24 1 0.9317 -4.9565 7.4870 25 6 0.3418 -2.3395 1.2859 26 6 1.2034 -2.4315 0.0250 27 1 -0.3634 0.1069 1.0221 28 1 -0.3633 0.8317 -0.6036 29 1 -0.3634 -0.9386 -0.4185 30 1 -0.0097 5.0175 1.5208 31 1 0.1367 2.3573 -2.6642 32 1 1.1582 3.7948 -2.9062 33 1 1.9036 2.2332 -2.4889 34 1 2.8113 -1.3342 -0.8978 35 1 3.6402 -2.2828 1.2378 36 1 3.8032 -0.5106 1.2203 37 1 2.8727 -1.2975 3.3800 38 1 1.6884 -0.3030 2.4983 39 1 1.7843 -3.3538 2.5234 40 1 -0.4512 -1.8861 3.6962 41 1 -1.6365 -2.1237 6.8052 42 1 -0.2032 -1.3956 1.2856 43 1 -0.3667 -3.1677 1.3035 44 1 0.5640 -2.3815 -0.8564 45 1 1.7484 -3.3755 0.0249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963331449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:51 Heat of formation + Delta-G solvation = 72.859487 kcal Electronic energy + Delta-G solvation = -29044.785003 eV Core-core repulsion = 25126.317895 eV Total energy + Delta-G solvation = -3918.467107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.81070 -40.47831 -37.94494 -36.52347 -35.14879 -33.66704 -33.27637 -31.38810 -30.89227 -30.39101 -28.12972 -27.44530 -26.38884 -24.08399 -23.05651 -22.30347 -21.93809 -20.85276 -19.90763 -19.03198 -17.81296 -17.15720 -16.73258 -16.13460 -15.92504 -15.75381 -15.31769 -14.72301 -14.40454 -14.10935 -13.98336 -13.71095 -13.45732 -13.41000 -13.11422 -13.01403 -12.92524 -12.40278 -12.26540 -12.02787 -11.87550 -11.79331 -11.70314 -11.61428 -11.03429 -10.83689 -10.65391 -10.47667 -10.39298 -10.30488 -10.12707 -9.77210 -9.63650 -9.54242 -9.46367 -8.84326 -8.81257 -8.66165 -6.90117 -5.72551 -3.00282 1.30751 1.65412 2.22910 2.30257 2.60190 2.94289 3.46147 3.50924 3.51456 4.08325 4.23557 4.61367 4.67045 4.77390 4.83826 4.91645 4.96891 4.98217 5.10256 5.14237 5.21158 5.30563 5.53333 5.54923 5.67254 5.71151 5.76271 5.82473 5.92582 5.96725 6.00137 6.10053 6.27166 6.34143 6.39620 6.44879 6.59361 6.66857 6.82601 7.03576 7.15881 7.23132 7.68087 7.73813 7.89918 8.46408 9.57413 10.16171 10.50653 11.50147 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003934 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.166236 B = 7115.625327 C = 8163.892318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.583 5.583 3 C 0.592 3.408 4 O -0.515 6.515 5 C -0.006 4.006 6 C -0.116 4.116 7 Cl -0.003 7.003 8 C 0.024 3.976 9 N -0.275 5.275 10 N -0.271 5.271 11 C 0.088 3.912 12 C 0.154 3.846 13 C -0.136 4.136 14 C -0.132 4.132 15 C 0.181 3.819 16 N -0.724 5.724 17 C -0.235 4.235 18 H 0.068 0.932 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.287 1.287 25 C -0.152 4.152 26 C -0.121 4.121 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.195 0.805 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.382 0.618 41 H 0.254 0.746 42 H 0.081 0.919 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.209 8.798 -19.343 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.316 5.316 3 C 0.376 3.624 4 O -0.390 6.390 5 C -0.136 4.136 6 C -0.154 4.154 7 Cl 0.026 6.974 8 C -0.154 4.154 9 N -0.105 5.105 10 N -0.059 5.059 11 C -0.052 4.052 12 C 0.052 3.948 13 C -0.175 4.175 14 C -0.173 4.173 15 C 0.071 3.929 16 N -0.364 5.364 17 C -0.366 4.366 18 H 0.086 0.914 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.214 1.214 25 C -0.190 4.190 26 C -0.159 4.159 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.212 0.788 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.215 0.785 41 H 0.064 0.936 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.578 9.185 -20.196 22.336 hybrid contribution 0.265 -0.628 1.907 2.025 sum 2.843 8.557 -18.289 20.391 Atomic orbital electron populations 1.22247 0.79458 1.02951 1.02809 1.47797 1.07159 1.05328 1.71331 1.16796 0.86311 0.81758 0.77544 1.90831 1.12862 1.86748 1.48554 1.21235 1.06504 0.97334 0.88571 1.21391 1.08047 0.98363 0.87586 1.98430 1.93338 1.90925 1.14721 1.23534 1.02595 0.98726 0.90537 1.73209 1.17022 1.08031 1.12235 1.45433 1.38738 1.14728 1.07020 1.22235 1.04354 1.03903 0.74700 1.21161 0.93148 0.81462 0.99010 1.21967 0.98362 1.02555 0.94617 1.22213 0.98442 1.01098 0.95502 1.20172 0.91107 0.95408 0.86193 1.42383 1.20146 1.69053 1.04798 1.19179 1.01153 1.29177 0.87131 0.91415 1.24692 0.96774 1.01569 0.97835 1.69635 1.11386 1.48769 1.28408 0.86330 0.77595 0.78826 0.83830 1.21365 1.21742 1.21359 1.22437 0.98823 1.03480 0.94212 1.21819 0.97842 0.97553 0.98694 0.90671 0.92762 0.88839 0.78792 0.89276 0.88005 0.88672 0.90824 0.91307 0.90826 0.92359 0.92322 0.93946 0.78456 0.93575 0.90115 0.91705 0.91696 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.73 7.96 59.85 0.48 1.21 16 2 N -0.58 -7.33 2.25 -175.35 -0.39 -7.72 16 3 C 0.59 8.48 6.41 -12.70 -0.08 8.40 16 4 O -0.52 -8.80 15.36 5.24 0.08 -8.72 16 5 C -0.01 -0.09 5.00 -82.00 -0.41 -0.50 16 6 C -0.12 -1.62 6.89 -38.88 -0.27 -1.89 16 7 Cl 0.00 -0.04 29.24 -51.86 -1.52 -1.56 16 8 C 0.02 0.29 12.04 -17.39 -0.21 0.08 16 9 N -0.27 -3.28 11.89 30.61 0.36 -2.91 16 10 N -0.27 -3.03 3.72 -63.84 -0.24 -3.27 16 11 C 0.09 0.60 11.22 59.85 0.67 1.27 16 12 C 0.15 1.93 2.91 -67.93 -0.20 1.73 16 13 C -0.14 -2.06 5.23 -26.73 -0.14 -2.20 16 14 C -0.13 -2.43 5.34 -26.73 -0.14 -2.57 16 15 C 0.18 3.47 2.77 -67.92 -0.19 3.28 16 16 N -0.72 -17.78 5.12 -53.42 -0.27 -18.05 16 17 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 18 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 21 Si 0.90 22.57 29.55 -169.99 -5.02 17.55 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 C -0.15 -2.25 4.74 -26.73 -0.13 -2.38 16 26 C -0.12 -1.37 4.91 -26.73 -0.13 -1.50 16 27 H 0.08 0.98 6.70 -51.93 -0.35 0.63 16 28 H 0.05 0.52 7.23 -51.93 -0.38 0.14 16 29 H 0.09 0.85 4.96 -51.93 -0.26 0.59 16 30 H 0.20 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.23 6.28 -51.93 -0.33 0.91 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.13 7.60 -51.93 -0.39 0.73 16 39 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 40 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 1.18 3.67 -51.93 -0.19 0.99 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.59 6.89 -51.93 -0.36 0.23 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -33.61 370.39 -8.00 -41.61 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.31 Total: 6.99 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -0.99 Total: -2.17 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: 0.18 Total: -59.28 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.08 Total: -8.72 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.52 Total: -1.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.61 -8.00 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963331449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.465 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds