Wall clock time and date at job start Sat Apr 11 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34771 * 120.00067 * 2 1 4 4 O 1.21646 * 120.00068 * 185.20126 * 3 2 1 5 5 C 1.47031 * 120.00168 * 5.19680 * 3 2 1 6 6 C 1.38543 * 126.90761 * 90.13361 * 5 3 2 7 7 Cl 1.73597 * 127.33364 * 359.97438 * 6 5 3 8 8 C 1.39811 * 105.32673 * 179.97438 * 6 5 3 9 9 N 1.30835 * 107.87694 * 359.97438 * 8 6 5 10 10 N 1.28431 * 110.97974 * 359.74200 * 9 8 6 11 11 C 1.46504 * 125.18512 * 180.26053 * 10 9 8 12 12 C 1.46496 * 119.99812 * 179.97438 * 2 1 3 13 13 C 1.53001 * 109.47395 * 239.05025 * 12 2 1 14 14 C 1.52995 * 109.47001 * 59.99899 * 13 12 2 15 15 C 1.53006 * 109.46940 * 60.00416 * 14 13 12 16 16 N 1.46504 * 109.46999 * 179.97438 * 15 14 13 17 17 C 1.36929 * 120.00193 * 274.99682 * 16 15 14 18 18 H 1.08007 * 119.99995 * 0.02562 * 17 16 15 19 19 C 1.38813 * 120.00047 * 180.02562 * 17 16 15 20 20 N 1.31612 * 120.00301 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99824 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47015 * 59.99923 * 21 19 17 23 23 H 1.48498 * 109.46748 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47350 * 299.99837 * 21 19 17 25 25 C 1.53001 * 109.46934 * 299.99625 * 15 14 13 26 26 C 1.52996 * 109.47444 * 359.05087 * 12 2 1 27 27 H 1.09001 * 109.47240 * 275.97170 * 1 2 3 28 28 H 1.08999 * 109.46743 * 35.96963 * 1 2 3 29 29 H 1.09002 * 109.47182 * 155.96887 * 1 2 3 30 30 H 1.07996 * 126.05727 * 179.97438 * 8 6 5 31 31 H 1.09007 * 109.46733 * 275.17375 * 11 10 9 32 32 H 1.08999 * 109.47362 * 35.17558 * 11 10 9 33 33 H 1.08998 * 109.47106 * 155.18137 * 11 10 9 34 34 H 1.08997 * 109.46770 * 119.05090 * 12 2 1 35 35 H 1.08999 * 109.47142 * 180.02562 * 13 12 2 36 36 H 1.09002 * 109.46913 * 300.00121 * 13 12 2 37 37 H 1.08999 * 109.47385 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47435 * 300.00142 * 14 13 12 39 39 H 1.08999 * 109.47280 * 59.99631 * 15 14 13 40 40 H 0.97007 * 119.99821 * 94.99990 * 16 15 14 41 41 H 0.96993 * 120.00500 * 179.97438 * 20 19 17 42 42 H 1.08999 * 109.47142 * 300.00090 * 25 15 14 43 43 H 1.09002 * 109.46913 * 180.02562 * 25 15 14 44 44 H 1.09004 * 109.46952 * 59.99726 * 26 12 2 45 45 H 1.08999 * 109.47390 * 179.97438 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3516 1.1693 -0.0955 5 6 1.4083 2.4379 0.1153 6 6 1.0841 3.1081 1.2837 7 17 1.4522 2.6266 2.9104 8 6 0.3972 4.2547 0.8736 9 7 0.3349 4.2397 -0.4332 10 7 0.9183 3.1993 -0.9094 11 6 1.0368 2.8755 -2.3333 12 6 2.1975 -1.2687 0.0006 13 6 3.0950 -1.3390 1.2377 14 6 2.2334 -1.2470 2.4986 15 6 1.2393 -2.4098 2.5231 16 7 0.4147 -2.3220 3.7308 17 6 0.8662 -2.8554 4.9084 18 1 1.8304 -3.3405 4.9469 19 6 0.0846 -2.7727 6.0526 20 7 -1.0902 -2.1812 6.0058 21 14 0.7009 -3.4997 7.6592 22 1 1.9735 -2.8392 8.0455 23 1 -0.3125 -3.2809 8.7224 24 1 0.9317 -4.9565 7.4870 25 6 0.3418 -2.3395 1.2859 26 6 1.2034 -2.4315 0.0250 27 1 -0.3634 0.1069 1.0221 28 1 -0.3633 0.8317 -0.6036 29 1 -0.3634 -0.9386 -0.4185 30 1 -0.0097 5.0175 1.5208 31 1 0.1367 2.3573 -2.6642 32 1 1.1582 3.7948 -2.9062 33 1 1.9036 2.2332 -2.4889 34 1 2.8113 -1.3342 -0.8978 35 1 3.6402 -2.2828 1.2378 36 1 3.8032 -0.5106 1.2203 37 1 2.8727 -1.2975 3.3800 38 1 1.6884 -0.3030 2.4983 39 1 1.7843 -3.3538 2.5234 40 1 -0.4512 -1.8861 3.6962 41 1 -1.6365 -2.1237 6.8052 42 1 -0.2032 -1.3956 1.2856 43 1 -0.3667 -3.1677 1.3035 44 1 0.5640 -2.3815 -0.8564 45 1 1.7484 -3.3755 0.0249 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963331449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:50 Heat of formation + Delta-G solvation = 51.230432 kcal Electronic energy + Delta-G solvation = -29045.722909 eV Core-core repulsion = 25126.317895 eV Total energy + Delta-G solvation = -3919.405014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.74071 -41.58922 -39.19820 -37.65885 -36.64294 -34.93670 -34.38920 -32.96724 -32.08440 -31.65043 -29.61778 -28.16603 -27.54114 -25.70656 -24.45761 -23.55640 -22.89250 -22.07232 -21.14693 -20.10592 -19.12092 -18.79966 -17.75300 -17.22909 -16.96360 -16.85813 -16.72059 -16.12797 -15.55444 -15.39324 -15.27136 -15.10075 -14.77421 -14.49534 -14.17971 -14.03418 -13.85049 -13.65671 -13.57854 -13.16526 -13.06921 -12.92713 -12.86324 -12.79483 -12.78441 -12.70139 -12.20002 -12.04558 -11.87261 -11.62539 -11.55644 -11.32700 -11.12803 -11.05624 -10.67703 -10.36533 -9.86372 -9.73198 -8.94487 -7.91581 -5.17972 0.32289 0.71576 1.14216 1.34874 1.45294 1.47624 1.53384 1.59554 2.03581 2.56917 3.12232 3.41303 3.46750 3.75931 3.80751 3.89953 3.94465 4.12928 4.23383 4.26026 4.33418 4.33808 4.38112 4.41298 4.43928 4.53101 4.62126 4.65120 4.67920 4.80880 4.85675 5.06289 5.06983 5.11521 5.19947 5.25253 5.33755 5.45679 5.50959 5.54499 5.65357 5.69809 6.13227 6.31544 6.75802 6.82930 7.37429 8.16516 8.38735 9.31520 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.003934 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.166236 B = 7115.625327 C = 8163.892318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.578 5.578 3 C 0.594 3.406 4 O -0.549 6.549 5 C -0.017 4.017 6 C -0.137 4.137 7 Cl -0.029 7.029 8 C 0.023 3.977 9 N -0.275 5.275 10 N -0.261 5.261 11 C 0.075 3.925 12 C 0.155 3.845 13 C -0.130 4.130 14 C -0.120 4.120 15 C 0.176 3.824 16 N -0.735 5.735 17 C -0.235 4.235 18 H 0.068 0.932 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.963 3.037 22 H -0.285 1.285 23 H -0.295 1.295 24 H -0.277 1.277 25 C -0.145 4.145 26 C -0.109 4.109 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.218 0.782 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.046 0.954 39 H 0.036 0.964 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.975 8.309 -22.100 23.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.309 5.309 3 C 0.378 3.622 4 O -0.426 6.426 5 C -0.148 4.148 6 C -0.175 4.175 7 Cl -0.001 7.001 8 C -0.154 4.154 9 N -0.106 5.106 10 N -0.049 5.049 11 C -0.063 4.063 12 C 0.053 3.947 13 C -0.168 4.168 14 C -0.161 4.161 15 C 0.068 3.932 16 N -0.374 5.374 17 C -0.367 4.367 18 H 0.086 0.914 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.792 3.208 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.203 1.203 25 C -0.182 4.182 26 C -0.147 4.147 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.137 0.863 30 H 0.234 0.766 31 H 0.134 0.866 32 H 0.139 0.861 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.357 8.680 -23.006 24.701 hybrid contribution 0.379 -0.440 2.678 2.741 sum 2.735 8.240 -20.327 22.104 Atomic orbital electron populations 1.22340 0.78217 1.05057 1.01874 1.47856 1.07889 1.04934 1.70235 1.16916 0.85914 0.82396 0.76981 1.90812 1.14231 1.87252 1.50333 1.21178 1.06926 0.97441 0.89241 1.21549 1.09652 0.99660 0.86621 1.98415 1.93635 1.91229 1.16799 1.23903 1.02095 0.98568 0.90858 1.73229 1.17130 1.08130 1.12066 1.45864 1.37262 1.13730 1.08063 1.22671 1.05830 1.05361 0.72401 1.21231 0.93383 0.81879 0.98179 1.21882 0.98114 1.02580 0.94267 1.22002 0.97971 1.00151 0.95946 1.20420 0.91465 0.95007 0.86308 1.42588 1.20294 1.68707 1.05788 1.19509 1.00818 1.28009 0.88412 0.91430 1.25412 0.97252 1.02898 1.00889 1.69780 1.12541 1.50630 1.28761 0.85371 0.76813 0.78481 0.80091 1.21165 1.22093 1.20304 1.22366 0.98489 1.03692 0.93682 1.21799 0.97522 0.97432 0.97956 0.93110 0.91058 0.86348 0.76592 0.86625 0.86122 0.88426 0.88555 0.89945 0.92555 0.96041 0.93506 0.94621 0.79658 0.94187 0.89784 0.91862 0.87771 0.88734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 7.96 127.77 1.02 2.30 16 2 N -0.58 -13.36 2.25 -826.93 -1.86 -15.22 16 3 C 0.59 16.40 6.41 86.55 0.56 16.95 16 4 O -0.55 -18.50 15.36 -4.18 -0.06 -18.56 16 5 C -0.02 -0.43 5.00 40.76 0.20 -0.23 16 6 C -0.14 -3.81 6.89 22.72 0.16 -3.65 16 7 Cl -0.03 -0.95 29.24 -2.72 -0.08 -1.03 16 8 C 0.02 0.52 12.04 85.22 1.03 1.55 16 9 N -0.27 -6.04 11.89 -57.07 -0.68 -6.72 16 10 N -0.26 -5.31 3.72 -355.91 -1.32 -6.63 16 11 C 0.08 0.80 11.22 127.77 1.43 2.23 16 12 C 0.15 3.45 2.91 44.99 0.13 3.58 16 13 C -0.13 -3.82 5.23 30.59 0.16 -3.66 16 14 C -0.12 -4.52 5.34 30.59 0.16 -4.36 16 15 C 0.18 6.74 2.77 44.99 0.12 6.86 16 16 N -0.73 -36.83 5.12 -322.92 -1.65 -38.49 16 17 C -0.24 -13.24 9.93 84.03 0.83 -12.41 16 18 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 20 N -0.97 -59.35 13.06 21.65 0.28 -59.06 16 21 Si 0.96 47.08 29.55 68.60 2.03 49.11 16 22 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 C -0.14 -4.02 4.74 30.59 0.14 -3.87 16 26 C -0.11 -2.04 4.91 30.59 0.15 -1.89 16 27 H 0.05 1.27 6.70 -2.39 -0.02 1.26 16 28 H 0.07 1.15 7.23 -2.39 -0.02 1.13 16 29 H 0.12 1.67 4.96 -2.39 -0.01 1.66 16 30 H 0.22 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.12 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.10 1.03 7.66 -2.39 -0.02 1.01 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 1.89 6.28 -2.39 -0.01 1.88 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.05 1.85 7.60 -2.39 -0.02 1.84 16 39 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 40 H 0.37 19.92 7.80 -92.70 -0.72 19.20 16 41 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.08 2.32 3.67 -2.39 -0.01 2.31 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 1.27 6.89 -2.38 -0.02 1.25 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -75.29 370.39 3.52 -71.77 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.30 Total: 25.16 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.57 Total: -0.32 kcal Atomic # 7 Polarization: -120.89 SS G_CDS: -5.24 Total: -126.13 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.06 Total: -18.56 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.08 Total: -1.03 kcal Total: -75.29 3.52 -71.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963331449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.001 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds