Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 119.99725 * 2 1 4 4 O 1.21705 * 119.99785 * 184.23918 * 3 2 1 5 5 C 1.46659 * 120.00302 * 4.23543 * 3 2 1 6 6 C 1.36675 * 126.84169 * 4.81201 * 5 3 2 7 7 N 1.33300 * 107.83169 * 180.02562 * 6 5 3 8 8 C 1.31023 * 109.70218 * 359.72617 * 7 6 5 9 9 Cl 1.73605 * 125.43527 * 180.29490 * 8 7 6 10 10 N 1.34603 * 109.13204 * 0.44887 * 8 7 6 11 11 C 1.46502 * 126.49410 * 179.82375 * 10 8 7 12 12 C 1.46500 * 120.00101 * 179.97438 * 2 1 3 13 13 C 1.52998 * 109.47085 * 62.83893 * 12 2 1 14 14 C 1.52999 * 109.46708 * 299.99645 * 13 12 2 15 15 C 1.52998 * 109.47516 * 300.00106 * 14 13 12 16 16 N 1.46498 * 109.47178 * 179.97438 * 15 14 13 17 17 C 1.36938 * 119.99829 * 85.00129 * 16 15 14 18 18 H 1.07994 * 120.00291 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00091 * 180.02562 * 17 16 15 20 20 N 1.31622 * 119.99602 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00397 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46860 * 89.99714 * 21 19 17 23 23 H 1.48489 * 109.47428 * 209.99938 * 21 19 17 24 24 H 1.48502 * 109.46802 * 330.00442 * 21 19 17 25 25 C 1.53002 * 109.46892 * 60.00060 * 15 14 13 26 26 C 1.52993 * 109.47296 * 299.99864 * 25 15 14 27 27 H 1.08999 * 109.47003 * 54.06854 * 1 2 3 28 28 H 1.08995 * 109.47187 * 174.07084 * 1 2 3 29 29 H 1.09001 * 109.47236 * 294.06699 * 1 2 3 30 30 H 1.07998 * 126.08119 * 0.02562 * 6 5 3 31 31 H 1.08997 * 109.47395 * 264.62931 * 11 10 8 32 32 H 1.08998 * 109.46667 * 24.62881 * 11 10 8 33 33 H 1.08998 * 109.46905 * 144.62646 * 11 10 8 34 34 H 1.09008 * 109.47059 * 182.83681 * 12 2 1 35 35 H 1.08990 * 109.47146 * 59.99609 * 13 12 2 36 36 H 1.08997 * 109.47077 * 180.02562 * 13 12 2 37 37 H 1.09001 * 109.46713 * 179.97438 * 14 13 12 38 38 H 1.09006 * 109.47088 * 60.00353 * 14 13 12 39 39 H 1.08997 * 109.47233 * 300.00135 * 15 14 13 40 40 H 0.97005 * 120.00223 * 264.99973 * 16 15 14 41 41 H 0.96999 * 119.99746 * 179.97438 * 20 19 17 42 42 H 1.09002 * 109.47075 * 179.97438 * 25 15 14 43 43 H 1.09006 * 109.47102 * 60.00127 * 25 15 14 44 44 H 1.08997 * 109.47152 * 300.00123 * 26 25 15 45 45 H 1.08995 * 109.47447 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3534 1.1687 -0.0779 5 6 1.4085 2.4356 0.0938 6 6 0.0637 2.5953 0.2780 7 7 -0.1921 3.9032 0.3057 8 6 0.9228 4.5746 0.1544 9 17 1.0610 6.3051 0.1351 10 7 1.9436 3.7087 0.0129 11 6 3.3547 4.0498 -0.1833 12 6 2.1975 -1.2687 0.0006 13 6 1.8823 -2.0402 -1.2825 14 6 0.3796 -2.3190 -1.3537 15 6 -0.0428 -3.1512 -0.1413 16 7 -1.4818 -3.4176 -0.2092 17 6 -1.9478 -4.4804 -0.9361 18 1 -1.2545 -5.1225 -1.4590 19 6 -3.3113 -4.7326 -1.0010 20 7 -4.1562 -3.9503 -0.3633 21 14 -3.9471 -6.1820 -1.9931 22 1 -4.0182 -7.3838 -1.1237 23 1 -5.3012 -5.8683 -2.5156 24 1 -3.0272 -6.4461 -3.1285 25 6 0.2725 -2.3797 1.1417 26 6 1.7751 -2.1009 1.2130 27 1 -0.3633 0.6031 -0.8321 28 1 -0.3633 -1.0221 -0.1062 29 1 -0.3634 0.4191 0.9383 30 1 -0.6625 1.8027 0.3824 31 1 3.5861 4.0405 -1.2484 32 1 3.5481 5.0430 0.2218 33 1 3.9798 3.3197 0.3307 34 1 3.2681 -1.0701 0.0513 35 1 2.1831 -1.4473 -2.1461 36 1 2.4269 -2.9843 -1.2819 37 1 0.1549 -2.8682 -2.2680 38 1 -0.1655 -1.3750 -1.3541 39 1 0.5022 -4.0951 -0.1409 40 1 -2.1045 -2.8411 0.2607 41 1 -5.1090 -4.1262 -0.4089 42 1 -0.0288 -2.9724 2.0055 43 1 -0.2726 -1.4356 1.1413 44 1 2.3201 -3.0449 1.2134 45 1 1.9997 -1.5509 2.1268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963670127.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 79.143340 kcal Electronic energy + Delta-G solvation = -28351.569553 eV Core-core repulsion = 24433.374934 eV Total energy + Delta-G solvation = -3918.194619 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.54400 -41.74076 -39.44432 -38.16306 -36.57859 -35.45230 -34.68806 -33.10484 -31.68977 -31.02342 -30.12306 -28.32817 -27.59029 -25.63452 -24.22059 -23.44230 -23.07976 -21.99839 -21.05265 -20.43327 -19.03211 -18.62489 -17.94125 -17.56829 -16.94815 -16.79410 -16.63873 -16.04561 -15.88731 -15.55586 -15.19214 -15.02908 -14.76311 -14.59218 -14.26718 -13.93278 -13.73070 -13.70988 -13.49731 -13.16794 -13.07011 -12.95992 -12.91814 -12.80366 -12.70804 -12.44801 -12.12019 -11.95652 -11.90377 -11.71018 -11.38743 -11.25086 -11.03568 -10.99004 -10.80598 -10.28880 -9.81205 -9.61453 -8.91897 -7.88206 -5.14578 -0.02813 0.00862 1.41088 1.44611 1.50753 1.51197 1.58946 2.06802 2.09166 2.60615 3.23873 3.45422 3.62151 3.67030 3.78382 3.90336 3.91622 4.10013 4.18902 4.21685 4.30432 4.35452 4.36464 4.46851 4.51456 4.65455 4.66341 4.74580 4.76939 4.82684 4.86318 5.05332 5.12247 5.17736 5.19611 5.27709 5.38936 5.46741 5.52195 5.59190 5.64301 5.71917 6.21016 6.35150 6.44413 6.93454 7.42003 8.18993 8.41607 9.34777 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.002723 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.832421 B =10279.985867 C =11373.587337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.002 3.998 2 N -0.575 5.575 3 C 0.594 3.406 4 O -0.571 6.571 5 C -0.080 4.080 6 C 0.031 3.969 7 N -0.496 5.496 8 C 0.255 3.745 9 Cl 0.062 6.938 10 N -0.415 5.415 11 C 0.060 3.940 12 C 0.147 3.853 13 C -0.115 4.115 14 C -0.157 4.157 15 C 0.174 3.826 16 N -0.735 5.735 17 C -0.232 4.232 18 H 0.071 0.929 19 C -0.073 4.073 20 N -0.965 5.965 21 Si 0.962 3.038 22 H -0.291 1.291 23 H -0.299 1.299 24 H -0.273 1.273 25 C -0.154 4.154 26 C -0.112 4.112 27 H 0.076 0.924 28 H 0.142 0.858 29 H 0.086 0.914 30 H 0.221 0.779 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.375 0.625 41 H 0.249 0.751 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.674 17.198 2.221 24.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.305 5.305 3 C 0.383 3.617 4 O -0.453 6.453 5 C -0.197 4.197 6 C -0.122 4.122 7 N -0.218 5.218 8 C -0.032 4.032 9 Cl 0.090 6.910 10 N -0.099 5.099 11 C -0.080 4.080 12 C 0.045 3.955 13 C -0.154 4.154 14 C -0.197 4.197 15 C 0.066 3.934 16 N -0.374 5.374 17 C -0.364 4.364 18 H 0.089 0.911 19 C -0.265 4.265 20 N -0.616 5.616 21 Si 0.792 3.208 22 H -0.218 1.218 23 H -0.225 1.225 24 H -0.198 1.198 25 C -0.191 4.191 26 C -0.150 4.150 27 H 0.094 0.906 28 H 0.160 0.840 29 H 0.104 0.896 30 H 0.237 0.763 31 H 0.113 0.887 32 H 0.132 0.868 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.207 0.793 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.106 0.894 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.768 17.573 2.132 24.383 hybrid contribution -0.260 -0.752 -0.594 0.993 sum 16.508 16.821 1.538 23.618 Atomic orbital electron populations 1.23942 0.79295 1.08226 1.02333 1.47443 1.07404 1.04679 1.70960 1.16728 0.85931 0.82473 0.76607 1.90755 1.13933 1.87462 1.53139 1.20754 0.94784 0.85647 1.18468 1.24245 0.93807 0.93552 1.00610 1.70157 1.25134 1.05329 1.21185 1.23550 0.84526 0.88040 1.07064 1.98434 1.97397 0.98217 1.96977 1.45205 1.09960 1.04284 1.50429 1.22564 0.75674 1.04604 1.05160 1.21201 0.97048 0.81539 0.95690 1.21787 0.96385 1.00487 0.96763 1.22731 0.95743 1.01590 0.99589 1.20417 0.84022 0.95886 0.93114 1.42605 1.02337 1.32917 1.59574 1.19535 0.90816 1.04226 1.21796 0.91096 1.25402 0.96564 1.01796 1.02761 1.69778 1.01611 1.41389 1.48858 0.85306 0.77219 0.79634 0.78614 1.21819 1.22542 1.19806 1.22499 0.97090 1.02145 0.97408 1.21752 0.95605 1.00433 0.97242 0.90607 0.84044 0.89641 0.76264 0.88659 0.86784 0.88110 0.88049 0.92089 0.89746 0.94183 0.89766 0.94276 0.79285 0.94202 0.92468 0.88495 0.89376 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 4.77 127.77 0.61 0.66 16 2 N -0.57 -13.36 2.76 -827.30 -2.28 -15.64 16 3 C 0.59 15.14 7.64 86.44 0.66 15.80 16 4 O -0.57 -16.46 14.33 -4.37 -0.06 -16.52 16 5 C -0.08 -1.93 6.82 39.95 0.27 -1.66 16 6 C 0.03 0.75 9.86 84.10 0.83 1.58 16 7 N -0.50 -12.95 11.21 -190.25 -2.13 -15.08 16 8 C 0.25 5.71 8.48 180.25 1.53 7.24 16 9 Cl 0.06 1.02 28.63 -2.72 -0.08 0.94 16 10 N -0.42 -8.94 3.18 -528.37 -1.68 -10.62 16 11 C 0.06 0.90 10.48 127.77 1.34 2.24 16 12 C 0.15 3.34 3.15 44.99 0.14 3.48 16 13 C -0.12 -2.80 5.64 30.59 0.17 -2.62 16 14 C -0.16 -4.81 5.13 30.59 0.16 -4.66 16 15 C 0.17 5.96 2.42 44.99 0.11 6.07 16 16 N -0.73 -33.53 5.12 -322.95 -1.65 -35.19 16 17 C -0.23 -12.14 9.93 84.03 0.83 -11.30 16 18 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 19 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 20 N -0.97 -56.63 13.06 21.65 0.28 -56.35 16 21 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C -0.15 -4.20 5.01 30.59 0.15 -4.05 16 26 C -0.11 -2.43 5.62 30.59 0.17 -2.25 16 27 H 0.08 1.62 6.68 -2.39 -0.02 1.60 16 28 H 0.14 3.72 1.80 -2.39 0.00 3.72 16 29 H 0.09 1.62 6.01 -2.39 -0.01 1.60 16 30 H 0.22 4.44 4.13 -2.91 -0.01 4.43 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 1.09 7.62 -2.39 -0.02 1.07 16 33 H 0.10 1.73 6.68 -2.39 -0.02 1.72 16 34 H 0.10 2.34 6.92 -2.38 -0.02 2.33 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 2.54 4.27 -2.38 -0.01 2.53 16 39 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 40 H 0.37 18.22 7.80 -92.70 -0.72 17.49 16 41 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 42 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.10 2.51 3.82 -2.38 -0.01 2.50 16 44 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -65.97 356.55 2.20 -63.78 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.33 Total: 30.64 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 7.45 Total: 6.98 kcal Atomic # 7 Polarization: -125.40 SS G_CDS: -7.47 Total: -132.87 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.06 Total: -16.52 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: 1.02 SS G_CDS: -0.08 Total: 0.94 kcal Total: -65.97 2.20 -63.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963670127.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.920 kcal (2) G-P(sol) polarization free energy of solvation -65.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds