Wall clock time and date at job start Sat Apr 11 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 N 1.46491 * 109.46957 * 179.72354 * 5 3 2 7 7 C 1.35044 * 126.03789 * 124.99926 * 6 5 3 8 8 C 1.35380 * 107.73043 * 179.97438 * 7 6 5 9 9 Cl 1.73595 * 126.04942 * 179.97438 * 8 7 6 10 10 C 1.39934 * 107.90724 * 0.02562 * 8 7 6 11 11 N 1.30855 * 108.20914 * 359.75342 * 10 8 7 12 12 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 13 13 C 1.53000 * 109.47359 * 59.99712 * 12 2 1 14 14 C 1.53000 * 109.46927 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47415 * 60.00185 * 14 13 12 16 16 N 1.46504 * 109.47431 * 180.02562 * 15 14 13 17 17 C 1.36936 * 119.99395 * 274.99764 * 16 15 14 18 18 H 1.07994 * 120.00441 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99419 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00426 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99789 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 59.99771 * 21 19 17 23 23 H 1.48495 * 109.47079 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46909 * 300.00246 * 21 19 17 25 25 C 1.53000 * 109.46922 * 299.99818 * 15 14 13 26 26 C 1.53000 * 109.47264 * 299.99724 * 12 2 1 27 27 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 28 28 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 29 29 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 31 31 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 32 32 H 1.07997 * 126.13872 * 359.94450 * 7 6 5 33 33 H 1.07995 * 125.89417 * 180.02562 * 10 8 7 34 34 H 1.09005 * 109.47049 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47095 * 299.99931 * 13 12 2 36 36 H 1.09000 * 109.47156 * 60.00210 * 13 12 2 37 37 H 1.09005 * 109.47331 * 299.99918 * 14 13 12 38 38 H 1.09002 * 109.46807 * 180.02562 * 14 13 12 39 39 H 1.08995 * 109.47131 * 59.99668 * 15 14 13 40 40 H 0.96996 * 120.00165 * 94.99612 * 16 15 14 41 41 H 0.96999 * 120.00093 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47048 * 299.99792 * 25 15 14 43 43 H 1.08998 * 109.47339 * 180.02562 * 25 15 14 44 44 H 1.09007 * 109.46721 * 300.00461 * 26 12 2 45 45 H 1.08995 * 109.47131 * 60.00106 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 7 2.3376 3.5857 0.0118 7 6 2.3778 4.6009 -0.8778 8 6 3.3981 5.4178 -0.5253 9 17 3.8741 6.8709 -1.3471 10 6 4.0020 4.8831 0.6182 11 7 3.3639 3.7879 0.9435 12 6 2.1974 -1.2688 -0.0006 13 6 1.8277 -2.0706 -1.2501 14 6 2.5932 -3.3953 -1.2509 15 6 2.2241 -4.1984 -0.0020 16 7 2.9575 -5.4667 -0.0025 17 6 2.4592 -6.5454 -0.6831 18 1 1.5259 -6.4611 -1.2198 19 6 3.1544 -7.7469 -0.6840 20 7 4.2921 -7.8495 -0.0303 21 14 2.4750 -9.2183 -1.6131 22 1 2.3452 -8.8778 -3.0527 23 1 3.3982 -10.3710 -1.4578 24 1 1.1411 -9.5758 -1.0667 25 6 2.5938 -3.3966 1.2475 26 6 1.8278 -2.0716 1.2483 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 0.7588 2.5344 -0.8833 31 1 0.7590 2.5257 0.8966 32 1 1.7152 4.7366 -1.7198 33 1 4.8459 5.3042 1.1443 34 1 3.2692 -1.0697 -0.0009 35 1 0.7561 -2.2697 -1.2502 36 1 2.0911 -1.4987 -2.1399 37 1 3.6648 -3.1958 -1.2511 38 1 2.3301 -3.9663 -2.1414 39 1 1.1526 -4.3979 -0.0018 40 1 3.7960 -5.5423 0.4792 41 1 4.7776 -8.6893 -0.0307 42 1 3.6655 -3.1971 1.2473 43 1 2.3314 -3.9689 2.1373 44 1 2.0912 -1.5003 2.1386 45 1 0.7562 -2.2707 1.2483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000964006254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:12 Heat of formation + Delta-G solvation = 51.583459 kcal Electronic energy + Delta-G solvation = -26939.235590 eV Core-core repulsion = 23019.845885 eV Total energy + Delta-G solvation = -3919.389705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.69144 -40.27177 -38.09729 -36.72389 -35.59420 -33.92756 -33.25834 -30.97411 -30.46270 -30.37574 -28.44726 -27.55356 -26.57738 -23.72275 -22.34684 -22.18806 -21.57604 -21.01169 -19.53973 -19.31134 -17.92238 -17.45441 -16.99195 -16.38272 -16.18113 -15.29999 -15.04744 -14.77460 -14.63675 -14.14530 -13.93199 -13.73983 -13.68690 -13.60376 -13.48801 -12.98999 -12.83315 -12.66506 -12.55993 -12.10695 -12.02000 -11.84481 -11.70727 -11.46044 -10.90794 -10.81455 -10.79685 -10.75793 -10.70004 -10.31018 -10.23824 -10.17540 -9.76692 -9.73368 -9.57568 -8.89551 -8.77551 -8.76776 -6.95813 -5.76360 -3.05221 1.30855 1.55100 2.26288 2.30120 2.38304 2.72112 3.42757 3.47140 3.48536 3.92052 4.13494 4.28428 4.45393 4.57994 4.60986 4.72747 4.85969 4.93061 5.06878 5.16558 5.23524 5.24160 5.31077 5.47250 5.52256 5.60628 5.72345 5.79016 5.83967 5.99688 6.01235 6.16647 6.22157 6.24192 6.31654 6.39220 6.53637 6.58902 6.66776 6.95063 7.08037 7.12320 7.20044 7.68581 7.86597 8.42258 9.53051 10.11795 10.46215 11.46223 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.001846 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.288968 B =15162.720485 C =15349.222793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.607 5.607 3 C 0.498 3.502 4 O -0.508 6.508 5 C 0.118 3.882 6 N -0.355 5.355 7 C 0.072 3.928 8 C -0.184 4.184 9 Cl -0.045 7.045 10 C 0.059 3.941 11 N -0.249 5.249 12 C 0.141 3.859 13 C -0.120 4.120 14 C -0.133 4.133 15 C 0.179 3.821 16 N -0.725 5.725 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.122 4.122 26 C -0.118 4.118 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.118 0.882 32 H 0.183 0.817 33 H 0.192 0.808 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.186 28.354 -0.222 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C 0.283 3.717 4 O -0.382 6.382 5 C -0.007 4.007 6 N -0.137 5.137 7 C -0.075 4.075 8 C -0.223 4.223 9 Cl -0.017 7.017 10 C -0.128 4.128 11 N -0.069 5.069 12 C 0.039 3.961 13 C -0.159 4.159 14 C -0.174 4.174 15 C 0.068 3.932 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.161 4.161 26 C -0.157 4.157 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.200 0.800 33 H 0.208 0.792 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.217 0.783 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.757 27.218 0.447 28.917 hybrid contribution -0.111 -0.108 -1.172 1.182 sum -9.868 27.109 -0.725 28.859 Atomic orbital electron populations 1.21893 0.79666 1.03669 1.02260 1.47974 1.07002 1.05912 1.73230 1.20394 0.88491 0.85040 0.77813 1.90812 1.13227 1.86480 1.47664 1.21638 0.89465 0.83228 1.06348 1.47863 1.25709 1.18639 1.21496 1.22198 0.99823 0.89192 0.96308 1.20745 1.03537 0.96272 1.01733 1.98328 1.91428 1.33972 1.77923 1.23949 1.00408 0.92906 0.95582 1.77671 0.99895 1.16717 1.12612 1.21296 0.97920 0.81048 0.95840 1.21852 1.00772 0.97069 0.96201 1.22248 0.99664 0.93780 1.01715 1.20216 0.95698 0.86259 0.90979 1.42427 1.26021 1.06571 1.61524 1.19183 1.04105 0.89533 1.24192 0.91296 1.24751 0.97277 0.98003 1.00999 1.69650 1.16020 1.25900 1.46517 0.86286 0.77833 0.82585 0.79571 1.21322 1.21712 1.21321 1.21783 1.00100 0.94359 0.99816 1.21815 1.00707 0.96523 0.96679 0.92062 0.89866 0.91369 0.85508 0.86412 0.79955 0.79162 0.88102 0.92055 0.92670 0.92460 0.91642 0.93643 0.78266 0.93465 0.91990 0.91419 0.92139 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 9.30 59.85 0.56 0.94 16 2 N -0.61 -6.01 2.76 -173.93 -0.48 -6.49 16 3 C 0.50 5.60 7.71 -10.98 -0.08 5.52 16 4 O -0.51 -8.34 15.05 5.55 0.08 -8.26 16 5 C 0.12 0.81 5.54 -5.20 -0.03 0.78 16 6 N -0.35 -3.46 3.40 -62.51 -0.21 -3.68 16 7 C 0.07 0.58 11.43 -17.16 -0.20 0.38 16 8 C -0.18 -1.70 6.65 -39.97 -0.27 -1.96 16 9 Cl -0.04 -0.37 29.30 -51.86 -1.52 -1.89 16 10 C 0.06 0.61 12.02 -17.33 -0.21 0.40 16 11 N -0.25 -3.10 11.65 30.64 0.36 -2.75 16 12 C 0.14 1.80 2.52 -67.93 -0.17 1.63 16 13 C -0.12 -1.59 5.20 -26.73 -0.14 -1.73 16 14 C -0.13 -2.31 5.50 -26.73 -0.15 -2.45 16 15 C 0.18 3.40 2.77 -67.93 -0.19 3.21 16 16 N -0.73 -17.94 5.12 -53.43 -0.27 -18.22 16 17 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C -0.12 -1.96 5.39 -26.70 -0.14 -2.11 16 26 C -0.12 -1.50 5.19 -26.70 -0.14 -1.64 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.08 0.49 6.43 -51.93 -0.33 0.16 16 29 H 0.07 0.19 6.43 -51.93 -0.33 -0.14 16 30 H 0.13 0.37 8.04 -51.93 -0.42 -0.04 16 31 H 0.12 0.55 7.40 -51.93 -0.38 0.16 16 32 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.10 1.59 6.90 -51.93 -0.36 1.23 16 35 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.38 10.20 7.80 -40.82 -0.32 9.88 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 45 H 0.06 0.72 6.66 -51.93 -0.35 0.37 16 LS Contribution 380.52 15.07 5.73 5.73 Total: -1.00 -35.53 380.52 -8.67 -44.20 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.66 Total: 5.78 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.40 Total: -4.22 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: 0.12 Total: -58.60 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.08 Total: -8.26 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.53 -8.67 -44.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964006254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.782 kcal (2) G-P(sol) polarization free energy of solvation -35.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds