Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34777 * 120.00264 * 2 1 4 4 O 1.21283 * 119.99750 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.99928 * 0.28128 * 3 2 1 6 6 N 1.46491 * 109.46957 * 179.72354 * 5 3 2 7 7 C 1.35044 * 126.03789 * 124.99926 * 6 5 3 8 8 C 1.35380 * 107.73043 * 179.97438 * 7 6 5 9 9 Cl 1.73595 * 126.04942 * 179.97438 * 8 7 6 10 10 C 1.39934 * 107.90724 * 0.02562 * 8 7 6 11 11 N 1.30855 * 108.20914 * 359.75342 * 10 8 7 12 12 C 1.46499 * 119.99537 * 180.02562 * 2 1 3 13 13 C 1.53000 * 109.47359 * 59.99712 * 12 2 1 14 14 C 1.53000 * 109.46927 * 179.97438 * 13 12 2 15 15 C 1.53000 * 109.47415 * 60.00185 * 14 13 12 16 16 N 1.46504 * 109.47431 * 180.02562 * 15 14 13 17 17 C 1.36936 * 119.99395 * 274.99764 * 16 15 14 18 18 H 1.07994 * 120.00441 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99419 * 179.97438 * 17 16 15 20 20 N 1.31617 * 120.00426 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99789 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47121 * 59.99771 * 21 19 17 23 23 H 1.48495 * 109.47079 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46909 * 300.00246 * 21 19 17 25 25 C 1.53000 * 109.46922 * 299.99818 * 15 14 13 26 26 C 1.53000 * 109.47264 * 299.99724 * 12 2 1 27 27 H 1.08998 * 109.46921 * 89.99095 * 1 2 3 28 28 H 1.08994 * 109.46996 * 209.99677 * 1 2 3 29 29 H 1.09001 * 109.46578 * 329.99540 * 1 2 3 30 30 H 1.09004 * 109.46965 * 299.72211 * 5 3 2 31 31 H 1.08994 * 109.46990 * 59.72065 * 5 3 2 32 32 H 1.07997 * 126.13872 * 359.94450 * 7 6 5 33 33 H 1.07995 * 125.89417 * 180.02562 * 10 8 7 34 34 H 1.09005 * 109.47049 * 179.97438 * 12 2 1 35 35 H 1.08995 * 109.47095 * 299.99931 * 13 12 2 36 36 H 1.09000 * 109.47156 * 60.00210 * 13 12 2 37 37 H 1.09005 * 109.47331 * 299.99918 * 14 13 12 38 38 H 1.09002 * 109.46807 * 180.02562 * 14 13 12 39 39 H 1.08995 * 109.47131 * 59.99668 * 15 14 13 40 40 H 0.96996 * 120.00165 * 94.99612 * 16 15 14 41 41 H 0.96999 * 120.00093 * 179.97438 * 20 19 17 42 42 H 1.09005 * 109.47048 * 299.99792 * 25 15 14 43 43 H 1.08998 * 109.47339 * 180.02562 * 25 15 14 44 44 H 1.09007 * 109.46721 * 300.00461 * 26 12 2 45 45 H 1.08995 * 109.47131 * 60.00106 * 26 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3518 1.1671 -0.0005 5 6 1.3855 2.4723 0.0064 6 7 2.3376 3.5857 0.0118 7 6 2.3778 4.6009 -0.8778 8 6 3.3981 5.4178 -0.5253 9 17 3.8741 6.8709 -1.3471 10 6 4.0020 4.8831 0.6182 11 7 3.3639 3.7879 0.9435 12 6 2.1974 -1.2688 -0.0006 13 6 1.8277 -2.0706 -1.2501 14 6 2.5932 -3.3953 -1.2509 15 6 2.2241 -4.1984 -0.0020 16 7 2.9575 -5.4667 -0.0025 17 6 2.4592 -6.5454 -0.6831 18 1 1.5259 -6.4611 -1.2198 19 6 3.1544 -7.7469 -0.6840 20 7 4.2921 -7.8495 -0.0303 21 14 2.4750 -9.2183 -1.6131 22 1 2.3452 -8.8778 -3.0527 23 1 3.3982 -10.3710 -1.4578 24 1 1.1411 -9.5758 -1.0667 25 6 2.5938 -3.3966 1.2475 26 6 1.8278 -2.0716 1.2483 27 1 -0.3633 0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3632 0.8900 0.5139 30 1 0.7588 2.5344 -0.8833 31 1 0.7590 2.5257 0.8966 32 1 1.7152 4.7366 -1.7198 33 1 4.8459 5.3042 1.1443 34 1 3.2692 -1.0697 -0.0009 35 1 0.7561 -2.2697 -1.2502 36 1 2.0911 -1.4987 -2.1399 37 1 3.6648 -3.1958 -1.2511 38 1 2.3301 -3.9663 -2.1414 39 1 1.1526 -4.3979 -0.0018 40 1 3.7960 -5.5423 0.4792 41 1 4.7776 -8.6893 -0.0307 42 1 3.6655 -3.1971 1.2473 43 1 2.3314 -3.9689 2.1373 44 1 2.0912 -1.5003 2.1386 45 1 0.7562 -2.2707 1.2483 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000964006254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = 27.851693 kcal Electronic energy + Delta-G solvation = -26940.264677 eV Core-core repulsion = 23019.845885 eV Total energy + Delta-G solvation = -3920.418792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.35318 -41.16387 -39.31962 -37.35438 -36.79442 -35.21648 -34.30628 -32.66045 -31.72338 -31.08043 -29.67947 -28.23986 -27.51068 -25.53882 -23.60059 -23.21609 -22.22290 -22.05841 -20.82349 -20.18077 -19.10485 -18.57190 -18.12204 -17.28843 -16.92711 -16.78016 -16.03589 -15.73586 -15.44850 -15.38207 -15.27971 -15.11510 -14.68777 -14.42321 -14.26073 -14.13308 -14.01443 -13.48900 -13.35556 -13.18616 -13.12478 -13.02026 -12.77007 -12.66607 -12.41730 -12.34541 -12.25671 -12.08445 -12.00613 -11.65887 -11.50960 -11.46380 -11.18747 -11.08051 -10.84317 -10.45240 -9.63641 -9.41892 -9.00272 -7.93026 -5.21769 0.67974 0.97543 1.46693 1.49814 1.49958 1.55972 1.61246 1.74832 1.98789 2.56810 3.31578 3.39639 3.62603 3.73913 3.82040 3.85342 3.87383 4.04527 4.07658 4.21178 4.32276 4.35031 4.38521 4.49536 4.52271 4.57287 4.61601 4.62092 4.78992 4.80855 4.94239 5.04809 5.10860 5.13796 5.21073 5.25211 5.33667 5.47467 5.52405 5.54435 5.62345 5.79718 6.28902 6.35645 6.52371 7.09332 7.34081 8.11694 8.33961 9.30623 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028041 B = 0.001846 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.288968 B =15162.720485 C =15349.222793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.602 5.602 3 C 0.490 3.510 4 O -0.572 6.572 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.084 3.916 8 C -0.203 4.203 9 Cl -0.041 7.041 10 C 0.049 3.951 11 N -0.300 5.300 12 C 0.147 3.853 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.175 3.825 16 N -0.741 5.741 17 C -0.236 4.236 18 H 0.079 0.921 19 C -0.082 4.082 20 N -0.973 5.973 21 Si 0.973 3.027 22 H -0.278 1.278 23 H -0.299 1.299 24 H -0.275 1.275 25 C -0.115 4.115 26 C -0.105 4.105 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.104 0.896 30 H 0.177 0.823 31 H 0.147 0.853 32 H 0.224 0.776 33 H 0.201 0.799 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.048 0.952 39 H 0.053 0.947 40 H 0.369 0.631 41 H 0.249 0.751 42 H 0.043 0.957 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 30.102 -1.258 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.334 5.334 3 C 0.278 3.722 4 O -0.451 6.451 5 C -0.004 4.004 6 N -0.143 5.143 7 C -0.063 4.063 8 C -0.242 4.242 9 Cl -0.013 7.013 10 C -0.138 4.138 11 N -0.121 5.121 12 C 0.043 3.957 13 C -0.143 4.143 14 C -0.166 4.166 15 C 0.067 3.933 16 N -0.380 5.380 17 C -0.368 4.368 18 H 0.097 0.903 19 C -0.274 4.274 20 N -0.624 5.624 21 Si 0.802 3.198 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.201 1.201 25 C -0.154 4.154 26 C -0.144 4.144 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.122 0.878 30 H 0.194 0.806 31 H 0.164 0.836 32 H 0.240 0.760 33 H 0.218 0.782 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.200 0.800 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -13.716 29.011 -0.596 32.095 hybrid contribution 1.066 -0.582 -0.858 1.486 sum -12.650 28.429 -1.453 31.150 Atomic orbital electron populations 1.22301 0.76356 1.05623 1.04216 1.47965 1.08798 1.04329 1.72321 1.21231 0.88034 0.86609 0.76354 1.90796 1.16207 1.87439 1.50609 1.22016 0.88608 0.79729 1.10043 1.48113 1.25515 1.19491 1.21202 1.22845 0.99371 0.87860 0.96219 1.20911 1.04329 0.97017 1.01934 1.98324 1.91505 1.33721 1.77705 1.24257 1.00658 0.92657 0.96202 1.77592 1.01790 1.17918 1.14786 1.20906 0.96509 0.82709 0.95529 1.21685 1.01450 0.94490 0.96676 1.22045 0.98901 0.95794 0.99842 1.20469 0.95294 0.84647 0.92933 1.42703 1.25917 1.08223 1.61159 1.19615 1.03947 0.90147 1.23051 0.90296 1.25602 0.97926 1.01058 1.02776 1.69827 1.17669 1.26147 1.48775 0.85214 0.77241 0.78803 0.78533 1.20448 1.22555 1.20102 1.21665 0.99624 0.95977 0.98094 1.21694 1.01567 0.94203 0.96891 0.90046 0.89717 0.87794 0.80622 0.83562 0.75964 0.78183 0.91922 0.89378 0.92234 0.94841 0.93353 0.92892 0.79974 0.94208 0.93840 0.91942 0.91641 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.34 9.30 127.77 1.19 1.53 16 2 N -0.60 -10.13 2.76 -822.58 -2.27 -12.40 16 3 C 0.49 10.04 7.71 87.66 0.68 10.72 16 4 O -0.57 -19.03 15.05 -3.04 -0.05 -19.08 16 5 C 0.12 1.16 5.54 85.64 0.47 1.64 16 6 N -0.36 -6.21 3.40 -351.68 -1.19 -7.41 16 7 C 0.08 1.12 11.43 83.54 0.95 2.07 16 8 C -0.20 -3.49 6.65 22.02 0.15 -3.35 16 9 Cl -0.04 -0.62 29.30 -2.72 -0.08 -0.70 16 10 C 0.05 1.02 12.02 85.25 1.02 2.04 16 11 N -0.30 -7.40 11.65 -56.97 -0.66 -8.07 16 12 C 0.15 3.59 2.52 44.99 0.11 3.71 16 13 C -0.10 -2.57 5.20 30.59 0.16 -2.41 16 14 C -0.12 -4.36 5.50 30.59 0.17 -4.20 16 15 C 0.17 6.65 2.77 44.99 0.12 6.78 16 16 N -0.74 -37.60 5.12 -322.94 -1.65 -39.25 16 17 C -0.24 -13.01 9.93 84.03 0.83 -12.18 16 18 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 21 Si 0.97 46.18 29.55 68.60 2.03 48.20 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.11 -3.73 5.39 30.61 0.17 -3.57 16 26 C -0.10 -2.48 5.19 30.61 0.16 -2.32 16 27 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.55 6.43 -2.39 -0.02 0.53 16 29 H 0.10 -0.07 6.43 -2.39 -0.02 -0.09 16 30 H 0.18 -0.06 8.04 -2.38 -0.02 -0.08 16 31 H 0.15 0.62 7.40 -2.39 -0.02 0.60 16 32 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 33 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.06 2.05 6.90 -2.38 -0.02 2.04 16 35 H 0.09 1.75 7.67 -2.39 -0.02 1.73 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.03 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 40 H 0.37 20.54 7.80 -92.71 -0.72 19.82 16 41 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.09 1.71 6.66 -2.39 -0.02 1.69 16 Total: -1.00 -83.12 380.52 3.34 -79.78 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.28 Total: 23.06 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: 6.66 Total: -3.81 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -5.50 Total: -127.46 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.05 Total: -19.08 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -83.12 3.34 -79.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000964006254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.633 kcal (2) G-P(sol) polarization free energy of solvation -83.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds