Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46957 * 2 1 4 4 N 1.28439 * 125.18478 * 275.55308 * 3 2 1 5 5 C 1.30840 * 110.97697 * 180.29277 * 4 3 2 6 6 C 1.39803 * 107.87790 * 359.73821 * 5 4 3 7 7 Cl 1.73602 * 127.33664 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18717 * 95.40242 * 3 2 1 9 9 C 1.47027 * 126.90572 * 359.97438 * 8 3 2 10 10 O 1.21642 * 120.00216 * 268.38801 * 9 8 3 11 11 N 1.34780 * 119.99697 * 88.39646 * 9 8 3 12 12 C 1.46508 * 119.99638 * 185.17213 * 11 9 8 13 13 H 1.08993 * 109.49769 * 34.92840 * 12 11 9 14 14 C 1.53624 * 109.65614 * 274.84661 * 12 11 9 15 15 N 1.46927 * 108.54418 * 294.84891 * 14 12 11 16 16 C 1.36938 * 120.62793 * 126.37164 * 15 14 12 17 17 H 1.07996 * 120.00480 * 325.46239 * 16 15 14 18 18 C 1.38813 * 119.99724 * 145.73614 * 16 15 14 19 19 N 1.31621 * 120.00016 * 344.98645 * 18 16 15 20 20 Si 1.86807 * 119.99881 * 164.98624 * 18 16 15 21 21 H 1.48493 * 109.46847 * 90.00059 * 20 18 16 22 22 H 1.48499 * 109.47012 * 210.00053 * 20 18 16 23 23 H 1.48494 * 109.46919 * 330.00053 * 20 18 16 24 24 C 1.46927 * 118.73870 * 306.09512 * 15 14 12 25 25 C 1.53188 * 108.77483 * 53.86226 * 24 15 14 26 26 C 1.53037 * 109.49661 * 155.00096 * 12 11 9 27 27 H 1.09000 * 109.45962 * 178.63723 * 26 12 11 28 28 C 1.53007 * 109.45743 * 298.59316 * 26 12 11 29 29 H 1.08997 * 109.47171 * 299.99944 * 1 2 3 30 30 H 1.09003 * 109.46849 * 60.00444 * 1 2 3 31 31 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 240.00056 * 2 1 3 33 33 H 1.08998 * 109.46926 * 120.00013 * 2 1 3 34 34 H 1.08002 * 126.06036 * 179.75407 * 5 4 3 35 35 H 0.96998 * 120.00297 * 5.16486 * 11 9 8 36 36 H 1.09000 * 109.73652 * 175.11194 * 14 12 11 37 37 H 1.08995 * 109.66557 * 54.54774 * 14 12 11 38 38 H 0.97005 * 119.99529 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58516 * 173.64968 * 24 15 14 40 40 H 1.08999 * 109.58387 * 294.07325 * 24 15 14 41 41 H 1.09003 * 109.49591 * 65.31269 * 25 24 15 42 42 H 1.08999 * 109.49851 * 185.41444 * 25 24 15 43 43 H 1.08998 * 109.46995 * 180.02562 * 28 26 12 44 44 H 1.09005 * 109.47132 * 300.07075 * 28 26 12 45 45 H 1.09000 * 109.47172 * 60.07010 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1692 2.1128 -1.0448 5 6 2.6271 3.2963 -0.7258 6 6 2.7827 3.3362 0.6630 7 17 3.3574 4.6655 1.6203 8 6 2.3801 2.0891 1.1126 9 6 2.3532 1.6191 2.5055 10 8 1.3639 1.8008 3.1896 11 7 3.4246 0.9872 3.0243 12 6 3.3578 0.4190 4.3730 13 1 2.3540 0.0363 4.5573 14 6 3.6888 1.5048 5.4082 15 7 5.0870 1.9164 5.2228 16 6 5.4085 3.2360 5.0483 17 1 4.7375 3.8887 4.5097 18 6 6.5997 3.7335 5.5587 19 7 7.2749 3.0388 6.4496 20 14 7.2442 5.3889 4.9810 21 1 6.7091 6.4616 5.8574 22 1 8.7279 5.3920 5.0445 23 1 6.8081 5.6291 3.5820 24 6 6.1342 0.8859 5.2344 25 6 5.7764 -0.1923 4.2067 26 6 4.3703 -0.7218 4.4975 27 1 4.3371 -1.1281 5.5083 28 6 4.0228 -1.8234 3.4940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8458 4.0999 -1.4134 35 1 4.2399 0.9084 2.5047 36 1 3.5552 1.1072 6.4142 37 1 3.0328 2.3629 5.2622 38 1 8.1075 3.3863 6.8060 39 1 7.0923 1.3357 4.9736 40 1 6.1960 0.4389 6.2266 41 1 5.8037 0.2366 3.2049 42 1 6.4940 -1.0101 4.2725 43 1 4.7436 -2.6362 3.5827 44 1 3.0213 -2.2007 3.7009 45 1 4.0565 -1.4176 2.4829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966360060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = 53.373399 kcal Electronic energy + Delta-G solvation = -29196.426497 eV Core-core repulsion = 25277.114410 eV Total energy + Delta-G solvation = -3919.312088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.63805 -39.67869 -37.59589 -36.38143 -34.70573 -34.24601 -32.87760 -31.16918 -30.81922 -29.92534 -29.17186 -27.31109 -24.50666 -24.13998 -23.26780 -22.11344 -21.57805 -21.15421 -20.01488 -18.81090 -18.26042 -16.72740 -16.24405 -16.11435 -15.38396 -15.26992 -14.72938 -14.58868 -14.40633 -14.10433 -13.85096 -13.81318 -13.49293 -13.22829 -13.05978 -12.91623 -12.58962 -12.41144 -12.08633 -11.76411 -11.67142 -11.63859 -11.51608 -11.47940 -11.21647 -10.88504 -10.73190 -10.44035 -10.37579 -10.30977 -10.02155 -9.89566 -9.66668 -9.52043 -9.32762 -8.75999 -8.68549 -8.40765 -6.55493 -5.77940 -3.25321 1.48880 1.82059 2.44597 2.50382 2.86514 3.38016 3.40224 3.45395 3.48658 4.25978 4.51204 4.58822 4.70061 4.81497 4.85767 5.05757 5.14932 5.19758 5.25497 5.28095 5.38235 5.42102 5.48329 5.52141 5.78001 5.78697 5.83617 5.93360 6.08777 6.12518 6.13503 6.28985 6.35336 6.50707 6.54296 6.57167 6.73518 6.84876 6.94113 7.26689 7.56365 7.71636 7.84441 7.87232 8.33222 8.50815 9.24138 9.84640 10.44638 11.30392 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.005319 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.325574 B = 5263.173758 C = 7063.142249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.266 5.266 4 N -0.276 5.276 5 C 0.020 3.980 6 C -0.116 4.116 7 Cl -0.006 7.006 8 C -0.005 4.005 9 C 0.589 3.411 10 O -0.524 6.524 11 N -0.681 5.681 12 C 0.134 3.866 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.583 5.583 16 C -0.247 4.247 17 H 0.062 0.938 18 C 0.010 3.990 19 N -0.901 5.901 20 Si 0.892 3.108 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.173 3.827 25 C -0.137 4.137 26 C -0.093 4.093 27 H 0.081 0.919 28 C -0.145 4.145 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.193 0.807 35 H 0.402 0.598 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.252 0.748 39 H 0.078 0.922 40 H 0.021 0.979 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 -9.227 -12.911 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.055 5.055 4 N -0.106 5.106 5 C -0.158 4.158 6 C -0.154 4.154 7 Cl 0.023 6.977 8 C -0.135 4.135 9 C 0.370 3.630 10 O -0.399 6.399 11 N -0.331 5.331 12 C 0.028 3.972 13 H 0.097 0.903 14 C 0.007 3.993 15 N -0.306 5.306 16 C -0.377 4.377 17 H 0.080 0.920 18 C -0.189 4.189 19 N -0.545 5.545 20 Si 0.722 3.278 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.202 1.202 24 C 0.047 3.953 25 C -0.177 4.177 26 C -0.112 4.112 27 H 0.099 0.901 28 C -0.202 4.202 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.210 0.790 35 H 0.239 0.761 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.039 0.961 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.612 -9.780 -13.133 18.988 hybrid contribution 1.213 1.578 0.265 2.008 sum -8.399 -8.202 -12.868 17.419 Atomic orbital electron populations 1.22180 0.93101 1.03655 1.03975 1.22049 0.96488 0.76331 1.05297 1.45654 1.45847 1.12129 1.01871 1.73162 1.19682 1.04231 1.13563 1.23486 1.03755 0.95677 0.92930 1.21391 1.09944 0.91251 0.92795 1.98417 1.86673 1.42532 1.70105 1.21392 1.08483 0.93561 0.90069 1.16747 0.84028 0.78380 0.83799 1.90833 1.33765 1.54908 1.60381 1.45896 1.14513 1.55105 1.17623 1.21762 0.98595 0.94598 0.82224 0.90337 1.21389 0.88562 0.95538 0.93838 1.43916 0.99620 1.03197 1.83842 1.19064 1.04620 0.85697 1.28278 0.92021 1.25139 1.00128 0.97327 0.96319 1.70015 1.16811 1.38746 1.28895 0.86455 0.77997 0.84472 0.78917 1.21365 1.21605 1.20204 1.20709 0.93550 0.87314 0.93758 1.22271 0.94555 0.99645 1.01217 1.21320 0.96029 0.93952 0.99916 0.90070 1.21869 1.00794 0.98405 0.99157 0.91133 0.91250 0.89936 0.87668 0.88240 0.79042 0.76134 0.95460 0.91928 0.93754 0.90364 0.96122 0.93126 0.92823 0.92785 0.93171 0.93380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.12 1.09 6.91 -4.04 -0.03 1.06 16 3 N -0.27 -3.45 3.35 -57.11 -0.19 -3.64 16 4 N -0.28 -3.69 11.89 30.61 0.36 -3.32 16 5 C 0.02 0.26 12.04 -17.39 -0.21 0.05 16 6 C -0.12 -1.82 6.89 -38.88 -0.27 -2.09 16 7 Cl -0.01 -0.10 29.24 -51.86 -1.52 -1.62 16 8 C 0.00 -0.08 6.72 -82.00 -0.55 -0.63 16 9 C 0.59 9.99 6.87 -12.70 -0.09 9.90 16 10 O -0.52 -10.38 16.82 5.24 0.09 -10.30 16 11 N -0.68 -10.86 4.25 -54.67 -0.23 -11.10 16 12 C 0.13 2.19 2.20 -67.58 -0.15 2.04 16 13 H 0.08 1.25 7.65 -51.93 -0.40 0.85 16 14 C 0.13 2.78 6.16 -3.49 -0.02 2.76 16 15 N -0.58 -13.73 2.87 -172.06 -0.49 -14.23 16 16 C -0.25 -6.58 9.52 -15.06 -0.14 -6.72 16 17 H 0.06 1.69 7.87 -52.49 -0.41 1.28 16 18 C 0.01 0.27 4.92 -17.43 -0.09 0.19 16 19 N -0.90 -25.65 11.53 55.49 0.64 -25.01 16 20 Si 0.89 21.76 29.58 -169.99 -5.03 16.73 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.17 3.78 5.26 -3.71 -0.02 3.76 16 25 C -0.14 -2.27 5.20 -26.61 -0.14 -2.40 16 26 C -0.09 -1.34 2.48 -90.58 -0.22 -1.56 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.14 -1.62 9.05 37.16 0.34 -1.28 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 0.86 7.65 -51.93 -0.40 0.46 16 34 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.40 6.29 6.63 -40.82 -0.27 6.02 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.43 7.93 -51.93 -0.41 1.02 16 38 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.08 1.95 6.46 -51.93 -0.34 1.62 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.83 6.40 -51.93 -0.33 0.50 16 42 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.52 7.54 -51.93 -0.39 0.12 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -31.26 381.24 -8.57 -39.83 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -6.74 Total: 2.88 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.21 Total: 4.02 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.09 Total: -57.30 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -1.52 Total: -1.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.26 -8.57 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966360060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.204 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds