Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46957 * 2 1 4 4 N 1.28439 * 125.18478 * 275.55308 * 3 2 1 5 5 C 1.30840 * 110.97697 * 180.29277 * 4 3 2 6 6 C 1.39803 * 107.87790 * 359.73821 * 5 4 3 7 7 Cl 1.73602 * 127.33664 * 180.02562 * 6 5 4 8 8 C 1.36740 * 125.18717 * 95.40242 * 3 2 1 9 9 C 1.47027 * 126.90572 * 359.97438 * 8 3 2 10 10 O 1.21642 * 120.00216 * 268.38801 * 9 8 3 11 11 N 1.34780 * 119.99697 * 88.39646 * 9 8 3 12 12 C 1.46508 * 119.99638 * 185.17213 * 11 9 8 13 13 H 1.08993 * 109.49769 * 34.92840 * 12 11 9 14 14 C 1.53624 * 109.65614 * 274.84661 * 12 11 9 15 15 N 1.46927 * 108.54418 * 294.84891 * 14 12 11 16 16 C 1.36938 * 120.62793 * 126.37164 * 15 14 12 17 17 H 1.07996 * 120.00480 * 325.46239 * 16 15 14 18 18 C 1.38813 * 119.99724 * 145.73614 * 16 15 14 19 19 N 1.31621 * 120.00016 * 344.98645 * 18 16 15 20 20 Si 1.86807 * 119.99881 * 164.98624 * 18 16 15 21 21 H 1.48493 * 109.46847 * 90.00059 * 20 18 16 22 22 H 1.48499 * 109.47012 * 210.00053 * 20 18 16 23 23 H 1.48494 * 109.46919 * 330.00053 * 20 18 16 24 24 C 1.46927 * 118.73870 * 306.09512 * 15 14 12 25 25 C 1.53188 * 108.77483 * 53.86226 * 24 15 14 26 26 C 1.53037 * 109.49661 * 155.00096 * 12 11 9 27 27 H 1.09000 * 109.45962 * 178.63723 * 26 12 11 28 28 C 1.53007 * 109.45743 * 298.59316 * 26 12 11 29 29 H 1.08997 * 109.47171 * 299.99944 * 1 2 3 30 30 H 1.09003 * 109.46849 * 60.00444 * 1 2 3 31 31 H 1.09002 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47171 * 240.00056 * 2 1 3 33 33 H 1.08998 * 109.46926 * 120.00013 * 2 1 3 34 34 H 1.08002 * 126.06036 * 179.75407 * 5 4 3 35 35 H 0.96998 * 120.00297 * 5.16486 * 11 9 8 36 36 H 1.09000 * 109.73652 * 175.11194 * 14 12 11 37 37 H 1.08995 * 109.66557 * 54.54774 * 14 12 11 38 38 H 0.97005 * 119.99529 * 179.97438 * 19 18 16 39 39 H 1.09001 * 109.58516 * 173.64968 * 24 15 14 40 40 H 1.08999 * 109.58387 * 294.07325 * 24 15 14 41 41 H 1.09003 * 109.49591 * 65.31269 * 25 24 15 42 42 H 1.08999 * 109.49851 * 185.41444 * 25 24 15 43 43 H 1.08998 * 109.46995 * 180.02562 * 28 26 12 44 44 H 1.09005 * 109.47132 * 300.07075 * 28 26 12 45 45 H 1.09000 * 109.47172 * 60.07010 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.1692 2.1128 -1.0448 5 6 2.6271 3.2963 -0.7258 6 6 2.7827 3.3362 0.6630 7 17 3.3574 4.6655 1.6203 8 6 2.3801 2.0891 1.1126 9 6 2.3532 1.6191 2.5055 10 8 1.3639 1.8008 3.1896 11 7 3.4246 0.9872 3.0243 12 6 3.3578 0.4190 4.3730 13 1 2.3540 0.0363 4.5573 14 6 3.6888 1.5048 5.4082 15 7 5.0870 1.9164 5.2228 16 6 5.4085 3.2360 5.0483 17 1 4.7375 3.8887 4.5097 18 6 6.5997 3.7335 5.5587 19 7 7.2749 3.0388 6.4496 20 14 7.2442 5.3889 4.9810 21 1 6.7091 6.4616 5.8574 22 1 8.7279 5.3920 5.0445 23 1 6.8081 5.6291 3.5820 24 6 6.1342 0.8859 5.2344 25 6 5.7764 -0.1923 4.2067 26 6 4.3703 -0.7218 4.4975 27 1 4.3371 -1.1281 5.5083 28 6 4.0228 -1.8234 3.4940 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8458 4.0999 -1.4134 35 1 4.2399 0.9084 2.5047 36 1 3.5552 1.1072 6.4142 37 1 3.0328 2.3629 5.2622 38 1 8.1075 3.3863 6.8060 39 1 7.0923 1.3357 4.9736 40 1 6.1960 0.4389 6.2266 41 1 5.8037 0.2366 3.2049 42 1 6.4940 -1.0101 4.2725 43 1 4.7436 -2.6362 3.5827 44 1 3.0213 -2.2007 3.7009 45 1 4.0565 -1.4176 2.4829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966360060.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = 34.302834 kcal Electronic energy + Delta-G solvation = -29197.253459 eV Core-core repulsion = 25277.114410 eV Total energy + Delta-G solvation = -3920.139049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.70680 -41.07208 -39.07792 -37.63964 -35.98840 -35.55453 -34.27135 -32.96402 -32.13539 -30.83621 -30.59834 -28.84684 -25.97584 -25.30120 -24.53192 -23.53900 -22.79969 -22.61612 -21.13846 -20.34022 -19.38484 -18.57089 -17.38387 -17.31249 -16.84153 -16.49510 -16.43239 -15.89172 -15.63463 -15.53686 -15.15104 -14.92886 -14.83079 -14.68097 -14.37725 -14.10348 -13.89042 -13.52882 -13.21370 -13.11267 -12.98751 -12.87984 -12.79453 -12.74999 -12.65289 -12.41634 -12.33026 -12.22407 -11.92366 -11.64398 -11.58718 -11.39812 -11.20586 -11.07209 -10.55980 -10.37366 -10.12883 -9.85533 -8.52611 -7.85767 -5.35258 0.34024 0.72861 1.22132 1.37749 1.40655 1.43617 1.52157 1.67952 2.19905 2.49667 3.29555 3.40640 3.46388 3.70038 3.82482 3.91152 3.92355 4.01545 4.08857 4.15133 4.21415 4.30261 4.46170 4.64441 4.66093 4.75315 4.76241 4.78671 4.79880 5.01413 5.05969 5.08994 5.10287 5.13623 5.21780 5.28174 5.45295 5.50508 5.53897 5.56383 5.70221 5.77412 6.37724 6.45897 6.78878 7.00072 7.20202 7.87742 8.41894 9.18792 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010976 B = 0.005319 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.325574 B = 5263.173758 C = 7063.142249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.255 5.255 4 N -0.272 5.272 5 C 0.023 3.977 6 C -0.135 4.135 7 Cl -0.029 7.029 8 C -0.021 4.021 9 C 0.595 3.405 10 O -0.557 6.557 11 N -0.673 5.673 12 C 0.145 3.855 13 H 0.090 0.910 14 C 0.133 3.867 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.050 0.950 18 C -0.036 4.036 19 N -0.928 5.928 20 Si 0.944 3.056 21 H -0.290 1.290 22 H -0.289 1.289 23 H -0.272 1.272 24 C 0.178 3.822 25 C -0.124 4.124 26 C -0.085 4.085 27 H 0.083 0.917 28 C -0.136 4.136 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.221 0.779 35 H 0.406 0.594 36 H 0.024 0.976 37 H 0.033 0.967 38 H 0.249 0.751 39 H 0.043 0.957 40 H -0.001 1.001 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 -11.430 -15.228 21.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.044 5.044 4 N -0.103 5.103 5 C -0.154 4.154 6 C -0.173 4.173 7 Cl -0.001 7.001 8 C -0.152 4.152 9 C 0.378 3.622 10 O -0.435 6.435 11 N -0.322 5.322 12 C 0.040 3.960 13 H 0.108 0.892 14 C 0.006 3.994 15 N -0.318 5.318 16 C -0.376 4.376 17 H 0.068 0.932 18 C -0.232 4.232 19 N -0.574 5.574 20 Si 0.772 3.228 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.197 1.197 24 C 0.053 3.947 25 C -0.163 4.163 26 C -0.104 4.104 27 H 0.102 0.898 28 C -0.193 4.193 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.126 0.874 34 H 0.237 0.763 35 H 0.243 0.757 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.191 -12.017 -15.482 22.090 hybrid contribution 1.310 2.240 1.003 2.782 sum -8.881 -9.777 -14.479 19.598 Atomic orbital electron populations 1.22149 0.92482 1.05200 1.02417 1.22508 0.96988 0.74591 1.07152 1.46059 1.44541 1.13010 1.00785 1.73190 1.19427 1.04276 1.13412 1.23921 1.02898 0.96346 0.92208 1.21588 1.11154 0.90817 0.93718 1.98403 1.87060 1.43747 1.70884 1.21211 1.09769 0.94157 0.90055 1.16892 0.83533 0.77559 0.84250 1.90816 1.35011 1.56196 1.61433 1.45832 1.14444 1.54705 1.17263 1.21580 0.99915 0.93572 0.80975 0.89160 1.21433 0.86566 0.95974 0.95384 1.44072 1.00983 1.02676 1.84111 1.19171 1.04221 0.87073 1.27158 0.93239 1.25689 1.00644 1.00026 0.96823 1.70133 1.17021 1.40030 1.30212 0.85640 0.77321 0.81273 0.78540 1.21708 1.21466 1.19664 1.20569 0.91733 0.88035 0.94369 1.22075 0.96646 0.98403 0.99144 1.21270 0.93616 0.94060 1.01456 0.89837 1.21782 1.02143 0.97278 0.98091 0.93811 0.91559 0.86865 0.84801 0.87401 0.76262 0.75684 0.95837 0.94800 0.94224 0.93853 0.98258 0.92808 0.90379 0.91116 0.91678 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 10.24 71.98 0.74 -1.61 16 2 C 0.11 1.61 6.91 86.38 0.60 2.21 16 3 N -0.25 -6.05 3.35 -334.60 -1.12 -7.17 16 4 N -0.27 -6.61 11.89 -57.06 -0.68 -7.29 16 5 C 0.02 0.58 12.04 85.22 1.03 1.60 16 6 C -0.13 -4.13 6.89 22.72 0.16 -3.97 16 7 Cl -0.03 -1.02 29.24 -2.72 -0.08 -1.10 16 8 C -0.02 -0.63 6.72 40.76 0.27 -0.35 16 9 C 0.60 19.82 6.87 86.55 0.59 20.42 16 10 O -0.56 -22.16 16.82 -4.16 -0.07 -22.23 16 11 N -0.67 -20.69 4.25 -445.12 -1.89 -22.59 16 12 C 0.15 4.58 2.20 45.21 0.10 4.68 16 13 H 0.09 2.71 7.65 -2.39 -0.02 2.69 16 14 C 0.13 5.63 6.16 86.51 0.53 6.16 16 15 N -0.60 -28.64 2.87 -698.26 -2.00 -30.65 16 16 C -0.25 -13.45 9.52 84.03 0.80 -12.65 16 17 H 0.05 2.81 7.87 -2.91 -0.02 2.78 16 18 C -0.04 -1.99 4.92 84.86 0.42 -1.57 16 19 N -0.93 -54.37 11.53 21.65 0.25 -54.12 16 20 Si 0.94 45.69 29.58 68.60 2.03 47.72 16 21 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 24 C 0.18 7.92 5.26 86.36 0.45 8.37 16 25 C -0.12 -3.85 5.20 30.67 0.16 -3.69 16 26 C -0.09 -2.22 2.48 -10.77 -0.03 -2.25 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 C -0.14 -2.44 9.05 71.98 0.65 -1.79 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.11 1.49 7.65 -2.39 -0.02 1.47 16 34 H 0.22 3.87 8.06 -2.91 -0.02 3.85 16 35 H 0.41 12.03 6.63 -92.71 -0.61 11.41 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16 38 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 39 H 0.04 2.22 6.46 -2.39 -0.02 2.20 16 40 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 41 H 0.05 1.66 6.40 -2.39 -0.02 1.64 16 42 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.05 0.94 7.54 -2.39 -0.02 0.92 16 Total: -1.00 -70.45 381.24 3.29 -67.16 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: 0.39 Total: 14.72 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.47 Total: 15.55 kcal Atomic # 7 Polarization: -116.36 SS G_CDS: -5.45 Total: -121.81 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.07 Total: -22.23 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -70.45 3.29 -67.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966360060.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.461 kcal (2) G-P(sol) polarization free energy of solvation -70.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds