Wall clock time and date at job start Sat Apr 11 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46495 * 109.46991 * 2 1 4 4 N 1.28433 * 125.18705 * 275.07842 * 3 2 1 5 5 C 1.30842 * 110.98004 * 179.97438 * 4 3 2 6 6 C 1.39802 * 107.87748 * 359.77629 * 5 4 3 7 7 Cl 1.73598 * 127.34034 * 180.26204 * 6 5 4 8 8 C 1.36753 * 125.18509 * 95.03610 * 3 2 1 9 9 C 1.47028 * 126.90694 * 0.02562 * 8 3 2 10 10 O 1.21648 * 119.99406 * 261.21425 * 9 8 3 11 11 N 1.34774 * 120.00284 * 81.21102 * 9 8 3 12 12 C 1.46497 * 119.99843 * 184.63789 * 11 9 8 13 13 H 1.08998 * 109.49774 * 35.06628 * 12 11 9 14 14 C 1.53192 * 109.50072 * 275.00061 * 12 11 9 15 15 N 1.46918 * 108.77851 * 185.38469 * 14 12 11 16 16 C 1.36935 * 120.63091 * 233.58982 * 15 14 12 17 17 H 1.08000 * 120.00429 * 30.82828 * 16 15 14 18 18 C 1.38809 * 120.00302 * 210.82895 * 16 15 14 19 19 N 1.31624 * 120.00151 * 11.46870 * 18 16 15 20 20 Si 1.86801 * 120.00442 * 191.46984 * 18 16 15 21 21 H 1.48498 * 109.47403 * 89.99910 * 20 18 16 22 22 H 1.48507 * 109.47292 * 210.00049 * 20 18 16 23 23 H 1.48499 * 109.47024 * 329.99738 * 20 18 16 24 24 C 1.46923 * 118.74251 * 53.60692 * 15 14 12 25 25 C 1.53195 * 108.77544 * 306.39785 * 24 15 14 26 26 C 1.53042 * 109.31253 * 54.63150 * 25 24 15 27 27 H 1.08995 * 109.46039 * 58.66079 * 26 25 24 28 28 C 1.53003 * 109.45628 * 178.61693 * 26 25 24 29 29 H 1.09002 * 109.46788 * 60.00279 * 1 2 3 30 30 H 1.08999 * 109.46682 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47131 * 300.00122 * 1 2 3 32 32 H 1.08994 * 109.47131 * 239.99878 * 2 1 3 33 33 H 1.09002 * 109.46788 * 119.99721 * 2 1 3 34 34 H 1.08004 * 126.05831 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00018 * 4.64207 * 11 9 8 36 36 H 1.08995 * 109.58339 * 65.59318 * 14 12 11 37 37 H 1.09004 * 109.58855 * 305.17445 * 14 12 11 38 38 H 0.96991 * 120.00424 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.59224 * 186.60569 * 24 15 14 40 40 H 1.09010 * 109.70030 * 66.24889 * 24 15 14 41 41 H 1.09001 * 109.49739 * 174.58292 * 25 24 15 42 42 H 1.08999 * 109.49424 * 294.68017 * 25 24 15 43 43 H 1.09001 * 109.47235 * 60.00221 * 28 26 25 44 44 H 1.08997 * 109.47155 * 179.97438 * 28 26 25 45 45 H 1.08996 * 109.47055 * 299.99570 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1774 2.1099 -1.0455 5 6 2.6265 3.2965 -0.7256 6 6 2.7675 3.3416 0.6645 7 17 3.3206 4.6784 1.6240 8 6 2.3735 2.0914 1.1134 9 6 2.3391 1.6241 2.5070 10 8 1.4020 1.9190 3.2243 11 7 3.3457 0.8689 2.9896 12 6 3.2638 0.3186 4.3448 13 1 2.2294 0.0591 4.5702 14 6 3.7602 1.3616 5.3511 15 7 3.7938 0.7512 6.6871 16 6 3.1503 1.3432 7.7409 17 1 2.2546 1.9221 7.5706 18 6 3.6490 1.1992 9.0283 19 7 4.8494 0.6928 9.2162 20 14 2.6169 1.7240 10.4941 21 1 1.7905 0.5788 10.9531 22 1 3.5098 2.1634 11.5964 23 1 1.7299 2.8473 10.0981 24 6 4.5312 -0.5061 6.8711 25 6 4.0262 -1.5282 5.8477 26 6 4.1376 -0.9341 4.4417 27 1 5.1756 -0.6694 4.2405 28 6 3.6664 -1.9651 3.4141 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 2.8460 4.0999 -1.4133 35 1 4.1244 0.6898 2.4396 36 1 3.0828 2.2155 5.3563 37 1 4.7622 1.6891 5.0737 38 1 5.1978 0.5919 10.1157 39 1 4.3626 -0.8846 7.8793 40 1 5.5967 -0.3328 6.7192 41 1 4.6304 -2.4334 5.9091 42 1 2.9847 -1.7703 6.0590 43 1 2.6285 -2.2305 3.6153 44 1 3.7451 -1.5420 2.4126 45 1 4.2893 -2.8569 3.4821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966360066.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:28 Heat of formation + Delta-G solvation = 32.014157 kcal Electronic energy + Delta-G solvation = -28389.583197 eV Core-core repulsion = 24469.344903 eV Total energy + Delta-G solvation = -3920.238294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.73873 -41.06070 -39.18152 -37.69161 -36.25843 -35.57832 -34.59181 -33.03777 -32.20117 -30.85486 -30.35495 -28.93579 -26.05041 -25.38928 -24.67677 -23.29555 -22.70651 -22.56309 -21.44534 -20.71977 -19.22593 -18.73784 -17.61040 -17.34184 -16.94702 -16.60464 -16.47691 -15.90253 -15.60346 -15.45972 -15.21726 -15.10558 -14.94337 -14.64711 -14.37756 -14.15070 -13.91823 -13.60855 -13.21280 -13.14490 -13.09990 -12.90080 -12.80822 -12.78280 -12.66047 -12.35744 -12.31142 -12.06548 -11.97676 -11.72279 -11.62620 -11.56237 -11.31174 -11.16671 -10.61120 -10.40875 -10.28348 -9.89036 -8.66156 -7.90361 -5.41163 0.28706 0.67087 1.14642 1.38137 1.44323 1.44443 1.54140 1.61552 2.04186 2.48651 3.24730 3.32369 3.42470 3.71350 3.75315 3.87823 3.89735 3.99230 4.07906 4.13420 4.20131 4.28062 4.42029 4.49330 4.63757 4.65656 4.73164 4.77593 4.92019 4.94786 5.03943 5.04773 5.09239 5.11763 5.14113 5.21454 5.38148 5.45633 5.52347 5.54448 5.62862 5.79256 6.28732 6.38443 6.78056 6.93437 7.13830 7.81263 8.31875 9.14608 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003460 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.473536 B = 8089.846368 C = 9120.404620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.255 5.255 4 N -0.272 5.272 5 C 0.027 3.973 6 C -0.128 4.128 7 Cl -0.027 7.027 8 C -0.023 4.023 9 C 0.594 3.406 10 O -0.552 6.552 11 N -0.687 5.687 12 C 0.152 3.848 13 H 0.066 0.934 14 C 0.142 3.858 15 N -0.605 5.605 16 C -0.268 4.268 17 H 0.052 0.948 18 C -0.040 4.040 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.280 1.280 22 H -0.289 1.289 23 H -0.276 1.276 24 C 0.172 3.828 25 C -0.122 4.122 26 C -0.083 4.083 27 H 0.078 0.922 28 C -0.136 4.136 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.039 0.961 32 H 0.138 0.862 33 H 0.108 0.892 34 H 0.224 0.776 35 H 0.415 0.585 36 H 0.030 0.970 37 H 0.018 0.982 38 H 0.252 0.748 39 H 0.056 0.944 40 H 0.002 0.998 41 H 0.084 0.916 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.342 -4.835 -23.815 24.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.013 4.013 3 N -0.044 5.044 4 N -0.102 5.102 5 C -0.150 4.150 6 C -0.166 4.166 7 Cl 0.002 6.998 8 C -0.154 4.154 9 C 0.376 3.624 10 O -0.428 6.428 11 N -0.339 5.339 12 C 0.046 3.954 13 H 0.085 0.915 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.398 4.398 17 H 0.070 0.930 18 C -0.236 4.236 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.201 1.201 24 C 0.047 3.953 25 C -0.161 4.161 26 C -0.102 4.102 27 H 0.097 0.903 28 C -0.193 4.193 29 H 0.087 0.913 30 H 0.129 0.871 31 H 0.059 0.941 32 H 0.156 0.844 33 H 0.126 0.874 34 H 0.241 0.759 35 H 0.252 0.748 36 H 0.049 0.951 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.020 0.980 41 H 0.102 0.898 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.268 -5.389 -23.968 24.783 hybrid contribution 0.245 1.409 1.958 2.425 sum -3.023 -3.980 -22.010 22.570 Atomic orbital electron populations 1.22164 0.92877 1.05144 1.02349 1.22512 0.96705 0.74730 1.07341 1.46066 1.44485 1.13049 1.00808 1.73229 1.19139 1.04530 1.13337 1.23978 1.02732 0.96122 0.92179 1.21505 1.11488 0.90048 0.93585 1.98375 1.87838 1.42791 1.70822 1.21115 1.10493 0.94300 0.89445 1.17036 0.82690 0.78023 0.84611 1.90898 1.36439 1.55944 1.59506 1.45883 1.21093 1.50455 1.16443 1.21403 1.00243 0.93997 0.79721 0.91531 1.21219 0.97034 0.94367 0.85842 1.44163 1.60978 1.23471 1.04273 1.19387 1.04175 1.29115 0.87156 0.93025 1.25792 0.96577 1.00744 1.00500 1.70120 1.16461 1.49996 1.20945 0.85306 0.77986 0.78206 0.79172 1.20644 1.21479 1.20149 1.20726 0.92088 0.84661 0.97837 1.22079 1.01129 0.98637 0.94280 1.21253 0.99122 0.93607 0.96266 0.90349 1.21798 1.01440 0.98319 0.97764 0.91341 0.87085 0.94144 0.84449 0.87390 0.75945 0.74802 0.95119 0.96437 0.93852 0.92583 0.97970 0.89790 0.93196 0.93016 0.91273 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.24 71.98 0.74 -1.52 16 2 C 0.11 1.37 6.91 86.38 0.60 1.97 16 3 N -0.25 -5.12 3.35 -334.59 -1.12 -6.24 16 4 N -0.27 -5.47 11.89 -57.06 -0.68 -6.15 16 5 C 0.03 0.52 12.04 85.22 1.03 1.55 16 6 C -0.13 -3.15 6.89 22.72 0.16 -3.00 16 7 Cl -0.03 -0.70 29.24 -2.72 -0.08 -0.78 16 8 C -0.02 -0.58 6.72 40.76 0.27 -0.30 16 9 C 0.59 18.09 6.87 86.55 0.59 18.69 16 10 O -0.55 -22.26 16.82 -4.18 -0.07 -22.33 16 11 N -0.69 -18.24 4.36 -445.81 -1.95 -20.18 16 12 C 0.15 5.08 2.03 45.07 0.09 5.17 16 13 H 0.07 2.57 7.65 -2.39 -0.02 2.55 16 14 C 0.14 6.30 6.09 86.36 0.53 6.83 16 15 N -0.61 -31.27 2.99 -699.11 -2.09 -33.36 16 16 C -0.27 -15.52 9.58 84.03 0.81 -14.71 16 17 H 0.05 3.06 7.85 -2.91 -0.02 3.04 16 18 C -0.04 -2.29 5.03 84.86 0.43 -1.87 16 19 N -0.93 -55.00 11.06 21.65 0.24 -54.76 16 20 Si 0.97 46.23 29.57 68.60 2.03 48.26 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 24 C 0.17 8.08 5.26 86.36 0.45 8.53 16 25 C -0.12 -4.15 5.36 30.67 0.16 -3.99 16 26 C -0.08 -2.30 2.27 -10.76 -0.02 -2.32 16 27 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 28 C -0.14 -2.53 9.02 71.98 0.65 -1.88 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.28 7.65 -2.39 -0.02 1.26 16 34 H 0.22 2.70 8.06 -2.91 -0.02 2.67 16 35 H 0.41 8.34 8.29 -92.71 -0.77 7.57 16 36 H 0.03 1.51 7.93 -2.39 -0.02 1.49 16 37 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.06 3.01 6.09 -2.39 -0.01 3.00 16 40 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 41 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.07 0.97 7.35 -2.39 -0.02 0.96 16 45 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.06 383.66 3.00 -71.06 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.23 Total: 11.33 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.48 Total: 13.15 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -5.60 Total: -120.68 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.33 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -74.06 3.00 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966360066.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.075 kcal (2) G-P(sol) polarization free energy of solvation -74.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds