Wall clock time and date at job start Sat Apr 11 2020 06:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46760 * 2 1 4 4 N 1.28442 * 125.18872 * 275.08045 * 3 2 1 5 5 C 1.30834 * 110.98162 * 180.02562 * 4 3 2 6 6 C 1.39812 * 107.87811 * 359.76076 * 5 4 3 7 7 Cl 1.73601 * 127.33880 * 180.29238 * 6 5 4 8 8 C 1.36747 * 125.18640 * 95.12069 * 3 2 1 9 9 C 1.47022 * 126.90581 * 359.94419 * 8 3 2 10 10 O 1.21646 * 120.00041 * 267.01967 * 9 8 3 11 11 N 1.34777 * 120.00093 * 86.74534 * 9 8 3 12 12 C 1.46502 * 120.00098 * 174.99516 * 11 9 8 13 13 H 1.09001 * 110.88880 * 34.29784 * 12 11 9 14 14 C 1.54912 * 111.00412 * 270.41988 * 12 11 9 15 15 N 1.47421 * 104.83102 * 278.93326 * 14 12 11 16 16 C 1.36940 * 125.64646 * 155.83630 * 15 14 12 17 17 H 1.08003 * 119.99737 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00263 * 0.02562 * 16 15 14 19 19 N 1.31619 * 119.99599 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00264 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46688 * 90.00585 * 20 18 16 22 22 H 1.48504 * 109.47138 * 210.00442 * 20 18 16 23 23 H 1.48500 * 109.47033 * 330.00532 * 20 18 16 24 24 C 1.47018 * 108.70779 * 335.87476 * 15 14 12 25 25 C 1.54429 * 107.27722 * 1.05769 * 24 15 14 26 26 C 1.53008 * 110.72588 * 263.84713 * 25 24 15 27 27 C 1.53001 * 110.76040 * 140.54576 * 25 24 15 28 28 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47438 * 299.99854 * 1 2 3 30 30 H 1.09005 * 109.47459 * 60.00290 * 1 2 3 31 31 H 1.09000 * 109.47144 * 240.00576 * 2 1 3 32 32 H 1.08995 * 109.47406 * 119.99723 * 2 1 3 33 33 H 1.08003 * 126.06315 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00067 * 354.99841 * 11 9 8 35 35 H 1.09003 * 110.36692 * 37.77184 * 14 12 11 36 36 H 1.08998 * 110.36835 * 160.09559 * 14 12 11 37 37 H 0.97005 * 119.99946 * 179.97438 * 19 18 16 38 38 H 1.08998 * 109.88985 * 120.47412 * 24 15 14 39 39 H 1.09002 * 109.88465 * 241.48966 * 24 15 14 40 40 H 1.08996 * 109.46937 * 173.46342 * 26 25 24 41 41 H 1.08995 * 109.47041 * 293.46800 * 26 25 24 42 42 H 1.09001 * 109.46424 * 53.46773 * 26 25 24 43 43 H 1.08995 * 109.47033 * 306.51244 * 27 25 24 44 44 H 1.09001 * 109.47286 * 66.51050 * 27 25 24 45 45 H 1.08995 * 109.47220 * 186.51312 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.1773 2.1101 -1.0456 5 6 2.6273 3.2963 -0.7258 6 6 2.7688 3.3412 0.6644 7 17 3.3225 4.6779 1.6238 8 6 2.3749 2.0910 1.1131 9 6 2.3409 1.6235 2.5067 10 8 1.3579 1.8288 3.1932 11 7 3.3966 0.9627 3.0218 12 6 3.4089 0.5933 4.4394 13 1 2.4048 0.3490 4.7861 14 6 4.0354 1.7181 5.3009 15 7 5.4913 1.5305 5.1656 16 6 6.4407 2.5020 5.3390 17 1 7.4867 2.2628 5.2164 18 6 6.0586 3.7942 5.6722 19 7 4.7839 4.0856 5.8220 20 14 7.3537 5.1193 5.9094 21 1 7.6125 5.7961 4.6132 22 1 6.8683 6.1144 6.8991 23 1 8.6098 4.5009 6.4044 24 6 5.7552 0.1278 4.8129 25 6 4.3883 -0.5816 4.6995 26 6 4.0398 -1.2978 6.0059 27 6 4.3818 -1.5619 3.5248 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.8462 4.0998 -1.4134 34 1 4.1482 0.7317 2.4539 35 1 3.7418 2.6961 4.9195 36 1 3.7342 1.6103 6.3428 37 1 4.5169 4.9885 6.0553 38 1 6.2791 0.0777 3.8584 39 1 6.3564 -0.3432 5.5907 40 1 3.0254 -1.6918 5.9448 41 1 4.7391 -2.1179 6.1684 42 1 4.1067 -0.5935 6.8352 43 1 4.6881 -1.0427 2.6167 44 1 5.0755 -2.3777 3.7284 45 1 3.3773 -1.9636 3.3923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974641533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:22 Heat of formation + Delta-G solvation = 65.621607 kcal Electronic energy + Delta-G solvation = -29096.890095 eV Core-core repulsion = 25178.109129 eV Total energy + Delta-G solvation = -3918.780966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.57417 -39.66728 -37.85258 -36.27047 -34.65511 -33.86805 -33.14815 -30.81767 -30.65377 -29.87200 -28.14917 -26.88749 -25.62889 -24.41992 -23.80337 -22.51893 -21.56631 -20.28158 -19.75490 -18.86760 -17.87787 -16.73933 -16.31260 -16.12493 -15.63499 -15.26093 -14.72381 -14.43457 -14.19800 -13.96673 -13.85685 -13.69059 -13.50186 -13.18412 -12.99710 -12.74013 -12.38465 -12.21737 -11.98266 -11.80218 -11.69149 -11.57932 -11.43271 -11.34827 -11.21107 -11.02300 -10.77065 -10.50018 -10.27860 -10.24119 -10.05940 -9.87752 -9.77401 -9.69155 -9.26555 -8.69241 -8.60375 -8.48776 -6.80477 -5.61231 -3.03956 1.55072 1.89984 2.50750 2.60185 2.91533 3.41507 3.46510 3.47103 3.48654 4.30197 4.50183 4.62866 4.74087 4.85751 4.89641 4.91171 5.16285 5.21287 5.22122 5.31626 5.45382 5.52643 5.53315 5.58840 5.72008 5.80254 5.82486 5.95368 6.03586 6.10737 6.16872 6.18996 6.33467 6.45142 6.53072 6.58615 6.61376 6.67109 6.89427 7.43330 7.62913 7.75575 7.89948 7.91114 8.38893 8.41416 9.23363 9.85226 10.48260 11.41450 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010312 B = 0.005327 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.542305 B = 5255.325092 C = 7200.397167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.118 3.882 3 N -0.268 5.268 4 N -0.277 5.277 5 C 0.019 3.981 6 C -0.114 4.114 7 Cl -0.001 7.001 8 C -0.005 4.005 9 C 0.592 3.408 10 O -0.519 6.519 11 N -0.683 5.683 12 C 0.121 3.879 13 H 0.090 0.910 14 C 0.146 3.854 15 N -0.599 5.599 16 C -0.226 4.226 17 H 0.075 0.925 18 C -0.004 4.004 19 N -0.913 5.913 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.143 3.857 25 C -0.086 4.086 26 C -0.128 4.128 27 C -0.131 4.131 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.099 0.901 33 H 0.192 0.808 34 H 0.399 0.601 35 H 0.116 0.884 36 H 0.022 0.978 37 H 0.252 0.748 38 H 0.020 0.980 39 H 0.024 0.976 40 H 0.050 0.950 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.056 0.944 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.946 -10.679 -11.603 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.002 4.002 3 N -0.057 5.057 4 N -0.107 5.107 5 C -0.160 4.160 6 C -0.152 4.152 7 Cl 0.027 6.973 8 C -0.135 4.135 9 C 0.373 3.627 10 O -0.393 6.393 11 N -0.333 5.333 12 C 0.016 3.984 13 H 0.108 0.892 14 C 0.020 3.980 15 N -0.325 5.325 16 C -0.354 4.354 17 H 0.093 0.907 18 C -0.200 4.200 19 N -0.561 5.561 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.017 3.983 25 C -0.087 4.087 26 C -0.186 4.186 27 C -0.189 4.189 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.209 0.791 34 H 0.234 0.766 35 H 0.134 0.866 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.954 -11.005 -11.827 17.588 hybrid contribution 1.452 1.347 0.622 2.076 sum -5.502 -9.658 -11.205 15.782 Atomic orbital electron populations 1.22181 0.93126 1.03627 1.03996 1.22041 0.96489 0.76390 1.05257 1.45667 1.45987 1.12195 1.01887 1.73141 1.19635 1.04336 1.13590 1.23482 1.04030 0.95562 0.92891 1.21416 1.09896 0.91155 0.92761 1.98430 1.87377 1.41713 1.69745 1.21418 1.08625 0.93577 0.89911 1.16707 0.83749 0.78423 0.83804 1.90843 1.32896 1.55221 1.60377 1.45784 1.19778 1.56008 1.11746 1.22671 0.99026 0.96619 0.80099 0.89184 1.22336 0.82805 0.97979 0.94867 1.44416 1.02515 1.03526 1.82039 1.18975 0.87662 0.88144 1.40650 0.90678 1.24733 0.96167 0.97301 1.01789 1.69774 1.13156 1.19138 1.54012 0.86187 0.80505 0.81947 0.77535 1.21615 1.21693 1.20822 1.21420 0.92884 0.86677 0.97323 1.21861 0.96876 0.94282 0.95722 1.21682 1.00446 0.99856 0.96568 1.21726 1.01260 0.98595 0.97339 0.89953 0.91117 0.91259 0.87670 0.88267 0.79065 0.76619 0.86644 0.95971 0.93714 0.96184 0.95789 0.93050 0.92627 0.91632 0.93118 0.92520 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.12 1.13 6.91 -4.04 -0.03 1.10 16 3 N -0.27 -3.62 3.35 -57.11 -0.19 -3.81 16 4 N -0.28 -3.83 11.89 30.61 0.36 -3.47 16 5 C 0.02 0.26 12.04 -17.39 -0.21 0.05 16 6 C -0.11 -1.91 6.89 -38.88 -0.27 -2.17 16 7 Cl 0.00 -0.02 29.24 -51.86 -1.52 -1.54 16 8 C -0.01 -0.09 6.72 -82.00 -0.55 -0.64 16 9 C 0.59 10.78 6.91 -12.70 -0.09 10.69 16 10 O -0.52 -11.09 16.77 5.24 0.09 -11.00 16 11 N -0.68 -11.70 4.62 -52.93 -0.24 -11.94 16 12 C 0.12 2.21 2.65 -65.78 -0.17 2.04 16 13 H 0.09 1.66 7.46 -51.93 -0.39 1.27 16 14 C 0.15 3.46 5.27 -2.53 -0.01 3.44 16 15 N -0.60 -14.50 3.39 -170.01 -0.58 -15.08 16 16 C -0.23 -6.12 10.27 -15.06 -0.15 -6.27 16 17 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 18 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 19 N -0.91 -26.44 10.09 55.49 0.56 -25.88 16 20 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.14 2.76 6.41 -3.01 -0.02 2.74 16 25 C -0.09 -1.34 0.81 -152.62 -0.12 -1.46 16 26 C -0.13 -1.81 8.41 37.16 0.31 -1.50 16 27 C -0.13 -1.58 8.08 37.16 0.30 -1.27 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.10 0.88 7.65 -51.93 -0.40 0.48 16 33 H 0.19 2.02 8.06 -52.48 -0.42 1.59 16 34 H 0.40 6.34 7.01 -40.82 -0.29 6.06 16 35 H 0.12 3.21 5.87 -51.93 -0.31 2.91 16 36 H 0.02 0.57 7.80 -51.93 -0.41 0.17 16 37 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.02 0.38 7.77 -51.93 -0.40 -0.02 16 39 H 0.02 0.47 7.85 -51.93 -0.41 0.06 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.07 7.57 -51.93 -0.39 0.68 16 43 H 0.05 0.59 6.42 -51.93 -0.33 0.26 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 382.07 15.07 5.76 5.76 Total: -1.00 -32.31 382.07 -8.18 -40.50 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.67 Total: 3.95 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.73 Total: 5.41 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: -0.09 Total: -60.18 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.52 Total: -1.54 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.31 -8.18 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974641533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.120 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds