Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34943 * 126.03172 * 2 1 4 4 C 1.35304 * 107.76943 * 180.11389 * 3 2 1 5 5 C 1.50695 * 126.04782 * 179.89399 * 4 3 2 6 6 C 1.50702 * 109.47135 * 99.72036 * 5 4 3 7 7 O 1.21283 * 119.99466 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00351 * 180.02562 * 6 5 4 9 9 C 1.46491 * 119.99958 * 179.97438 * 8 6 5 10 10 H 1.08991 * 109.47703 * 34.99644 * 9 8 6 11 11 C 1.53001 * 109.47219 * 274.99376 * 9 8 6 12 12 C 1.52996 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47220 * 60.00418 * 12 11 9 14 14 C 1.53008 * 109.47074 * 300.00109 * 13 12 11 15 15 H 1.08999 * 109.47058 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47014 * 299.99808 * 14 13 12 17 17 C 1.36939 * 119.99933 * 275.27473 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.52999 * 109.46675 * 59.99923 * 14 13 12 26 26 C 1.39972 * 107.90702 * 359.63947 * 4 3 2 27 27 Cl 1.73593 * 125.91295 * 180.24909 * 26 4 3 28 28 N 1.30903 * 108.17656 * 0.22009 * 26 4 3 29 29 H 1.08996 * 109.47114 * 270.27147 * 1 2 3 30 30 H 1.09008 * 109.46608 * 30.26837 * 1 2 3 31 31 H 1.08997 * 109.47474 * 150.26567 * 1 2 3 32 32 H 1.08005 * 126.11477 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47193 * 339.71998 * 5 4 3 34 34 H 1.09004 * 109.47405 * 219.71894 * 5 4 3 35 35 H 0.97000 * 119.99341 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.47539 * 300.00558 * 11 9 8 37 37 H 1.09006 * 109.47137 * 60.00177 * 11 9 8 38 38 H 1.08997 * 109.47425 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.47216 * 300.00101 * 12 11 9 40 40 H 1.08995 * 109.47753 * 179.97438 * 13 12 11 41 41 H 1.09005 * 109.47067 * 59.99557 * 13 12 11 42 42 H 0.97001 * 119.99790 * 94.99446 * 16 14 13 43 43 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47925 * 60.00288 * 25 14 13 45 45 H 1.09009 * 109.46506 * 180.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6673 -0.0026 5 6 4.7676 1.5464 -0.0058 6 6 5.3186 1.6455 1.3934 7 8 4.7710 1.0601 2.3036 8 7 6.4193 2.3853 1.6335 9 6 6.9546 2.4820 2.9937 10 1 6.8099 1.5328 3.5094 11 6 6.2227 3.5911 3.7521 12 6 6.7821 3.6926 5.1725 13 6 8.2759 4.0173 5.1104 14 6 9.0079 2.9082 4.3519 15 1 10.0720 3.1398 4.3072 16 7 8.8140 1.6324 5.0454 17 6 9.6334 1.2878 6.0870 18 1 10.4254 1.9547 6.3944 19 6 9.4460 0.0816 6.7479 20 7 8.4810 -0.7312 6.3730 21 14 10.5643 -0.3887 8.1683 22 1 10.4543 0.6300 9.2432 23 1 10.1589 -1.7149 8.6993 24 1 11.9691 -0.4553 7.6913 25 6 8.4484 2.8069 2.9315 26 6 3.5350 -0.7324 0.0042 27 17 4.9347 -1.7593 0.0102 28 7 2.2888 -1.1330 0.0058 29 1 -0.3633 0.0049 1.0276 30 1 -0.3633 0.8877 -0.5180 31 1 -0.3634 -0.8923 -0.5097 32 1 1.9277 2.1193 -0.0004 33 1 4.4996 2.5411 -0.3619 34 1 5.5225 1.1160 -0.6639 35 1 6.8570 2.8537 0.9055 36 1 6.3673 4.5405 3.2364 37 1 5.1584 3.3600 3.7960 38 1 6.2605 4.4824 5.7129 39 1 6.6378 2.7434 5.6885 40 1 8.6744 4.0900 6.1222 41 1 8.4202 4.9666 4.5943 42 1 8.1026 1.0336 4.7693 43 1 8.3504 -1.5742 6.8346 44 1 8.5926 3.7560 2.4155 45 1 8.9696 2.0164 2.3913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981338772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = 39.450007 kcal Electronic energy + Delta-G solvation = -27495.372877 eV Core-core repulsion = 23575.457026 eV Total energy + Delta-G solvation = -3919.915851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.51050 -39.63185 -37.87007 -36.72208 -34.34789 -33.69562 -32.95723 -32.00815 -30.86915 -29.47694 -28.34946 -27.79566 -25.85188 -23.59253 -22.08365 -21.79352 -21.45670 -20.76728 -20.01850 -18.52215 -17.30135 -17.11258 -16.79429 -15.76890 -15.70249 -15.22958 -15.01254 -14.58953 -14.40702 -13.86765 -13.75204 -13.66086 -13.50238 -13.45970 -13.20247 -12.94405 -12.68672 -12.41284 -11.95058 -11.86747 -11.71030 -11.69138 -11.54249 -11.31117 -10.82282 -10.75387 -10.66116 -10.59514 -10.16255 -10.11788 -10.00999 -9.81222 -9.47841 -9.43885 -9.33367 -8.82425 -8.62204 -8.58381 -6.86645 -5.66563 -2.95912 1.42993 1.57753 2.33879 2.72724 2.95728 3.48960 3.53449 3.54414 3.55157 4.24749 4.51580 4.66364 4.80821 4.82081 4.97877 5.07468 5.09181 5.25641 5.32493 5.34458 5.42539 5.57331 5.67487 5.73693 5.77319 5.81597 5.93013 5.97737 6.02868 6.15663 6.19457 6.26295 6.46962 6.50748 6.66710 6.71627 6.80101 6.89800 6.92377 7.09601 7.17717 7.28188 7.77395 7.81209 8.51102 8.57315 9.61972 10.20347 10.54488 11.55335 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002911 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.569937 B = 9617.070236 C =10658.092194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.365 5.365 3 C 0.076 3.924 4 C -0.202 4.202 5 C -0.064 4.064 6 C 0.508 3.492 7 O -0.521 6.521 8 N -0.728 5.728 9 C 0.146 3.854 10 H 0.098 0.902 11 C -0.118 4.118 12 C -0.110 4.110 13 C -0.135 4.135 14 C 0.179 3.821 15 H 0.050 0.950 16 N -0.721 5.721 17 C -0.240 4.240 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.929 5.929 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.127 4.127 26 C 0.143 3.857 27 Cl 0.012 6.988 28 N -0.283 5.283 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.394 0.606 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.385 0.615 43 H 0.255 0.745 44 H 0.060 0.940 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.589 9.335 -19.018 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.149 5.149 3 C -0.070 4.070 4 C -0.215 4.215 5 C -0.105 4.105 6 C 0.292 3.708 7 O -0.395 6.395 8 N -0.380 5.380 9 C 0.043 3.957 10 H 0.116 0.884 11 C -0.157 4.157 12 C -0.148 4.148 13 C -0.175 4.175 14 C 0.068 3.932 15 H 0.068 0.932 16 N -0.364 5.364 17 C -0.371 4.371 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.577 5.577 21 Si 0.735 3.265 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.166 4.166 26 C -0.049 4.049 27 Cl 0.039 6.961 28 N -0.108 5.108 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.227 0.773 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.220 0.780 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.698 7.749 -18.215 24.654 hybrid contribution 1.146 0.353 0.512 1.304 sum -13.552 8.102 -17.702 23.721 Atomic orbital electron populations 1.21929 0.73328 1.04636 1.03852 1.48164 1.06556 1.03127 1.57008 1.22248 0.89841 0.93685 1.01249 1.19199 0.94263 0.91560 1.16446 1.19940 0.95002 0.99971 0.95576 1.20537 0.80653 0.78820 0.90740 1.90766 1.58506 1.44275 1.45987 1.46157 1.29376 1.51379 1.11044 1.21013 0.92674 1.00659 0.81396 0.88432 1.21827 0.99576 0.97648 0.96656 1.21353 0.95785 1.02343 0.95312 1.22177 0.95904 0.98096 1.01350 1.20156 0.96549 0.87698 0.88786 0.93229 1.42507 1.38718 1.17238 1.37917 1.19167 1.09196 1.01323 1.07439 0.91341 1.24736 0.98850 0.97360 0.99926 1.69664 1.33128 1.11537 1.43351 0.86322 0.80146 0.77418 0.82587 1.21401 1.21802 1.21404 1.22064 0.94224 1.00949 0.99350 1.22513 0.89261 0.90798 1.02308 1.98414 1.33784 1.67088 1.96783 1.77367 0.99991 1.08012 1.25461 0.90341 0.89106 0.89060 0.80188 0.88189 0.88093 0.77337 0.92936 0.92475 0.93458 0.90396 0.92104 0.93962 0.77978 0.93484 0.92154 0.91451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.47 59.85 0.69 1.28 16 2 N -0.37 -3.95 4.01 -68.16 -0.27 -4.22 16 3 C 0.08 0.75 11.40 -17.23 -0.20 0.56 16 4 C -0.20 -2.48 4.60 -105.02 -0.48 -2.96 16 5 C -0.06 -0.64 6.04 -29.04 -0.18 -0.82 16 6 C 0.51 7.32 7.79 -10.98 -0.09 7.23 16 7 O -0.52 -10.25 15.70 5.56 0.09 -10.17 16 8 N -0.73 -9.43 5.08 -53.81 -0.27 -9.70 16 9 C 0.15 2.40 2.28 -67.93 -0.16 2.25 16 10 H 0.10 2.10 5.94 -51.93 -0.31 1.79 16 11 C -0.12 -1.86 5.49 -26.73 -0.15 -2.01 16 12 C -0.11 -1.94 5.77 -26.74 -0.15 -2.10 16 13 C -0.13 -2.38 5.61 -26.73 -0.15 -2.53 16 14 C 0.18 3.47 3.10 -67.93 -0.21 3.26 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 N -0.72 -17.94 4.28 -53.42 -0.23 -18.17 16 17 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 21 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.13 -2.00 5.07 -26.73 -0.14 -2.14 16 26 C 0.14 2.09 7.84 -17.30 -0.14 1.96 16 27 Cl 0.01 0.17 29.16 -51.86 -1.51 -1.34 16 28 N -0.28 -4.12 12.58 32.94 0.41 -3.70 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.18 1.02 8.06 -52.48 -0.42 0.60 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.39 3.63 8.60 -40.82 -0.35 3.27 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.69 7.60 -51.93 -0.39 1.29 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.38 10.41 6.06 -40.82 -0.25 10.17 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -36.84 384.80 -8.64 -45.47 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.76 Total: 9.65 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -1.59 Total: -3.31 kcal Atomic # 7 Polarization: -64.28 SS G_CDS: 0.36 Total: -63.91 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -1.51 Total: -1.34 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.84 -8.64 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.922 kcal (2) G-P(sol) polarization free energy of solvation -36.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds