Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34943 * 126.03172 * 2 1 4 4 C 1.35304 * 107.76943 * 180.11389 * 3 2 1 5 5 C 1.50695 * 126.04782 * 179.89399 * 4 3 2 6 6 C 1.50702 * 109.47135 * 99.72036 * 5 4 3 7 7 O 1.21283 * 119.99466 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00351 * 180.02562 * 6 5 4 9 9 C 1.46491 * 119.99958 * 179.97438 * 8 6 5 10 10 H 1.08991 * 109.47703 * 34.99644 * 9 8 6 11 11 C 1.53001 * 109.47219 * 274.99376 * 9 8 6 12 12 C 1.52996 * 109.47349 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47220 * 60.00418 * 12 11 9 14 14 C 1.53008 * 109.47074 * 300.00109 * 13 12 11 15 15 H 1.08999 * 109.47058 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47014 * 299.99808 * 14 13 12 17 17 C 1.36939 * 119.99933 * 275.27473 * 16 14 13 18 18 H 1.08001 * 119.99700 * 359.72658 * 17 16 14 19 19 C 1.38810 * 120.00095 * 179.71972 * 17 16 14 20 20 N 1.31624 * 119.99740 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00044 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47173 * 60.00435 * 21 19 17 23 23 H 1.48497 * 109.47172 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47132 * 300.00314 * 21 19 17 25 25 C 1.52999 * 109.46675 * 59.99923 * 14 13 12 26 26 C 1.39972 * 107.90702 * 359.63947 * 4 3 2 27 27 Cl 1.73593 * 125.91295 * 180.24909 * 26 4 3 28 28 N 1.30903 * 108.17656 * 0.22009 * 26 4 3 29 29 H 1.08996 * 109.47114 * 270.27147 * 1 2 3 30 30 H 1.09008 * 109.46608 * 30.26837 * 1 2 3 31 31 H 1.08997 * 109.47474 * 150.26567 * 1 2 3 32 32 H 1.08005 * 126.11477 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.47193 * 339.71998 * 5 4 3 34 34 H 1.09004 * 109.47405 * 219.71894 * 5 4 3 35 35 H 0.97000 * 119.99341 * 359.97438 * 8 6 5 36 36 H 1.09005 * 109.47539 * 300.00558 * 11 9 8 37 37 H 1.09006 * 109.47137 * 60.00177 * 11 9 8 38 38 H 1.08997 * 109.47425 * 180.02562 * 12 11 9 39 39 H 1.08996 * 109.47216 * 300.00101 * 12 11 9 40 40 H 1.08995 * 109.47753 * 179.97438 * 13 12 11 41 41 H 1.09005 * 109.47067 * 59.99557 * 13 12 11 42 42 H 0.97001 * 119.99790 * 94.99446 * 16 14 13 43 43 H 0.96998 * 119.99409 * 179.97438 * 20 19 17 44 44 H 1.08991 * 109.47925 * 60.00288 * 25 14 13 45 45 H 1.09009 * 109.46506 * 180.02562 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0913 0.0000 4 6 3.5437 0.6673 -0.0026 5 6 4.7676 1.5464 -0.0058 6 6 5.3186 1.6455 1.3934 7 8 4.7710 1.0601 2.3036 8 7 6.4193 2.3853 1.6335 9 6 6.9546 2.4820 2.9937 10 1 6.8099 1.5328 3.5094 11 6 6.2227 3.5911 3.7521 12 6 6.7821 3.6926 5.1725 13 6 8.2759 4.0173 5.1104 14 6 9.0079 2.9082 4.3519 15 1 10.0720 3.1398 4.3072 16 7 8.8140 1.6324 5.0454 17 6 9.6334 1.2878 6.0870 18 1 10.4254 1.9547 6.3944 19 6 9.4460 0.0816 6.7479 20 7 8.4810 -0.7312 6.3730 21 14 10.5643 -0.3887 8.1683 22 1 10.4543 0.6300 9.2432 23 1 10.1589 -1.7149 8.6993 24 1 11.9691 -0.4553 7.6913 25 6 8.4484 2.8069 2.9315 26 6 3.5350 -0.7324 0.0042 27 17 4.9347 -1.7593 0.0102 28 7 2.2888 -1.1330 0.0058 29 1 -0.3633 0.0049 1.0276 30 1 -0.3633 0.8877 -0.5180 31 1 -0.3634 -0.8923 -0.5097 32 1 1.9277 2.1193 -0.0004 33 1 4.4996 2.5411 -0.3619 34 1 5.5225 1.1160 -0.6639 35 1 6.8570 2.8537 0.9055 36 1 6.3673 4.5405 3.2364 37 1 5.1584 3.3600 3.7960 38 1 6.2605 4.4824 5.7129 39 1 6.6378 2.7434 5.6885 40 1 8.6744 4.0900 6.1222 41 1 8.4202 4.9666 4.5943 42 1 8.1026 1.0336 4.7693 43 1 8.3504 -1.5742 6.8346 44 1 8.5926 3.7560 2.4155 45 1 8.9696 2.0164 2.3913 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981338772.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = 12.580889 kcal Electronic energy + Delta-G solvation = -27496.538009 eV Core-core repulsion = 23575.457026 eV Total energy + Delta-G solvation = -3921.080984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.35459 -40.85956 -39.25208 -37.76730 -35.91937 -34.63553 -34.45994 -32.94721 -32.61915 -30.72376 -29.78563 -28.86924 -26.65105 -25.65664 -23.32940 -23.22657 -22.28182 -21.82840 -21.09302 -19.97596 -19.19576 -18.12585 -17.80621 -17.07206 -16.56700 -16.46905 -16.19417 -15.97366 -15.69650 -15.32989 -15.25782 -15.06077 -14.69364 -14.40583 -14.30104 -13.97798 -13.72062 -13.42642 -13.39747 -13.19771 -12.85172 -12.78212 -12.74866 -12.59371 -12.59106 -12.50441 -12.18093 -12.09851 -11.78678 -11.54905 -11.50876 -11.38865 -11.12429 -10.79279 -10.67620 -10.29231 -9.85567 -9.43929 -8.93557 -7.89023 -5.16740 0.51668 0.75567 1.41253 1.45058 1.48559 1.54614 1.87996 1.99541 2.48518 2.58438 3.43820 3.56320 3.82488 3.88943 3.95962 4.05794 4.13164 4.24684 4.33001 4.39341 4.42970 4.43488 4.51304 4.60259 4.65936 4.69836 4.72624 4.75877 4.82660 4.87422 4.99338 5.05977 5.15139 5.17750 5.30958 5.35542 5.48517 5.52878 5.59695 5.71429 5.75189 6.01535 6.32236 6.40686 6.81470 7.37631 7.54827 8.18936 8.38711 9.34127 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.002911 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.569937 B = 9617.070236 C =10658.092194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.363 5.363 3 C 0.091 3.909 4 C -0.228 4.228 5 C -0.052 4.052 6 C 0.503 3.497 7 O -0.582 6.582 8 N -0.712 5.712 9 C 0.154 3.846 10 H 0.035 0.965 11 C -0.106 4.106 12 C -0.107 4.107 13 C -0.125 4.125 14 C 0.165 3.835 15 H 0.052 0.948 16 N -0.735 5.735 17 C -0.231 4.231 18 H 0.078 0.922 19 C -0.083 4.083 20 N -0.973 5.973 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.302 1.302 24 H -0.276 1.276 25 C -0.114 4.114 26 C 0.117 3.883 27 Cl -0.010 7.010 28 N -0.329 5.329 29 H 0.082 0.918 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.230 0.770 33 H 0.150 0.850 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.094 0.906 37 H 0.041 0.959 38 H 0.066 0.934 39 H 0.022 0.978 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.370 0.630 43 H 0.246 0.754 44 H 0.111 0.889 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.792 13.502 -21.089 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.146 5.146 3 C -0.056 4.056 4 C -0.241 4.241 5 C -0.092 4.092 6 C 0.291 3.709 7 O -0.461 6.461 8 N -0.365 5.365 9 C 0.048 3.952 10 H 0.053 0.947 11 C -0.144 4.144 12 C -0.146 4.146 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.070 0.930 16 N -0.376 5.376 17 C -0.363 4.363 18 H 0.096 0.904 19 C -0.275 4.275 20 N -0.624 5.624 21 Si 0.799 3.201 22 H -0.205 1.205 23 H -0.229 1.229 24 H -0.202 1.202 25 C -0.153 4.153 26 C -0.073 4.073 27 Cl 0.018 6.982 28 N -0.156 5.156 29 H 0.100 0.900 30 H 0.151 0.849 31 H 0.111 0.889 32 H 0.246 0.754 33 H 0.168 0.832 34 H 0.132 0.868 35 H 0.255 0.745 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.085 0.915 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.106 0.894 42 H 0.202 0.798 43 H 0.055 0.945 44 H 0.129 0.871 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.860 11.989 -20.342 27.899 hybrid contribution 1.110 -0.845 1.122 1.791 sum -13.749 11.144 -19.220 26.127 Atomic orbital electron populations 1.22358 0.70716 1.06813 1.04779 1.48616 1.07991 1.02489 1.55525 1.23022 0.88882 0.95270 0.98408 1.19574 0.96153 0.90660 1.17697 1.20000 0.94450 1.02378 0.92397 1.21386 0.80141 0.77429 0.91961 1.90754 1.60398 1.46632 1.48311 1.45917 1.29001 1.51240 1.10326 1.20639 0.93593 0.98054 0.82872 0.94670 1.21713 0.98234 0.99051 0.95416 1.21292 0.96581 1.00099 0.96592 1.22049 0.94993 0.99206 1.00272 1.20524 0.97303 0.85778 0.90712 0.92974 1.42763 1.37806 1.19200 1.37796 1.19625 1.08686 1.00807 1.07200 0.90399 1.25556 1.00806 0.97959 1.03146 1.69868 1.35642 1.11839 1.45099 0.85261 0.78623 0.76523 0.79684 1.20456 1.22865 1.20214 1.21944 0.93040 1.03203 0.97082 1.22777 0.88960 0.91888 1.03663 1.98388 1.34921 1.67922 1.96952 1.77242 1.00637 1.10572 1.27100 0.89996 0.84948 0.88917 0.75384 0.83249 0.86796 0.74545 0.88729 0.93990 0.91520 0.95857 0.94420 0.89403 0.79755 0.94544 0.87071 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.86 11.47 127.77 1.47 2.32 16 2 N -0.36 -7.29 4.01 -369.56 -1.48 -8.78 16 3 C 0.09 1.55 11.40 83.54 0.95 2.50 16 4 C -0.23 -5.26 4.60 -20.12 -0.09 -5.35 16 5 C -0.05 -0.91 6.04 29.10 0.18 -0.73 16 6 C 0.50 13.98 7.79 87.66 0.68 14.66 16 7 O -0.58 -23.68 15.70 -3.04 -0.05 -23.73 16 8 N -0.71 -16.91 5.08 -442.55 -2.25 -19.15 16 9 C 0.15 4.93 2.28 44.99 0.10 5.03 16 10 H 0.04 1.61 5.94 -2.39 -0.01 1.59 16 11 C -0.11 -3.11 5.49 30.59 0.17 -2.94 16 12 C -0.11 -3.73 5.77 30.59 0.18 -3.55 16 13 C -0.13 -4.17 5.61 30.60 0.17 -4.00 16 14 C 0.17 6.23 3.10 44.99 0.14 6.37 16 15 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 16 N -0.73 -37.73 4.28 -322.93 -1.38 -39.11 16 17 C -0.23 -13.12 9.93 84.03 0.83 -12.28 16 18 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 19 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 20 N -0.97 -63.68 13.06 21.65 0.28 -63.40 16 21 Si 0.97 48.29 29.55 68.60 2.03 50.32 16 22 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 C -0.11 -3.34 5.07 30.60 0.16 -3.18 16 26 C 0.12 3.51 7.84 85.25 0.67 4.18 16 27 Cl -0.01 -0.30 29.16 -2.72 -0.08 -0.38 16 28 N -0.33 -9.76 12.58 -49.68 -0.62 -10.38 16 29 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.23 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.42 5.94 8.60 -92.71 -0.80 5.15 16 36 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.02 1.04 7.60 -2.39 -0.02 1.03 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.37 21.28 6.06 -92.71 -0.56 20.71 16 43 H 0.25 15.81 8.31 -92.71 -0.77 15.04 16 44 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -89.71 384.80 2.17 -87.53 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: -0.34 Total: 28.57 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 6.07 Total: -1.50 kcal Atomic # 7 Polarization: -135.37 SS G_CDS: -5.45 Total: -140.82 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -89.71 2.17 -87.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981338772.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.114 kcal (2) G-P(sol) polarization free energy of solvation -89.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds