Wall clock time and date at job start Sat Apr 11 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00095 * 2 1 4 4 H 1.07996 * 120.00233 * 208.77537 * 3 2 1 5 5 C 1.38809 * 120.00025 * 28.77290 * 3 2 1 6 6 N 1.31622 * 119.99844 * 8.35357 * 5 3 2 7 7 Si 1.86798 * 120.00376 * 188.34537 * 5 3 2 8 8 H 1.48504 * 109.47154 * 60.00140 * 7 5 3 9 9 H 1.48501 * 109.47566 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47222 * 300.00250 * 7 5 3 11 11 C 1.46505 * 120.00184 * 180.02562 * 2 1 3 12 12 C 1.53039 * 109.45488 * 300.00092 * 11 2 1 13 13 C 1.53196 * 109.30810 * 181.37271 * 12 11 2 14 14 N 1.46924 * 108.89419 * 305.28792 * 13 12 11 15 15 C 1.34778 * 120.63577 * 233.67823 * 14 13 12 16 16 O 1.21472 * 119.99728 * 0.03942 * 15 14 13 17 17 C 1.48452 * 119.99927 * 180.02562 * 15 14 13 18 18 C 1.39540 * 120.54909 * 200.34383 * 17 15 14 19 19 C 1.38754 * 118.26600 * 180.02562 * 18 17 15 20 20 C 1.50697 * 120.42995 * 180.02562 * 19 18 17 21 21 F 1.39904 * 109.46675 * 300.00027 * 20 19 18 22 22 F 1.39898 * 109.47254 * 59.99916 * 20 19 18 23 23 N 1.32211 * 119.14704 * 0.02562 * 19 18 17 24 24 C 1.31885 * 121.03593 * 359.97438 * 23 19 18 25 25 N 1.31583 * 121.91409 * 359.72058 * 24 23 19 26 26 C 1.47207 * 118.55039 * 53.54411 * 14 13 12 27 27 C 1.53037 * 109.44771 * 60.05712 * 11 2 1 28 28 H 1.08997 * 109.46966 * 265.58496 * 1 2 3 29 29 H 1.09001 * 109.47056 * 25.59076 * 1 2 3 30 30 H 1.09002 * 109.46792 * 145.58704 * 1 2 3 31 31 H 0.97002 * 119.99709 * 180.02562 * 6 5 3 32 32 H 1.08994 * 109.45907 * 180.02562 * 11 2 1 33 33 H 1.08996 * 109.50536 * 61.42210 * 12 11 2 34 34 H 1.08998 * 109.52995 * 301.33355 * 12 11 2 35 35 H 1.08990 * 109.59067 * 65.15467 * 13 12 11 36 36 H 1.09009 * 109.58634 * 185.43580 * 13 12 11 37 37 H 1.08000 * 120.86637 * 0.02562 * 18 17 15 38 38 H 1.09001 * 109.47290 * 180.02562 * 20 19 18 39 39 H 1.07996 * 119.04107 * 180.02562 * 24 23 19 40 40 H 1.09004 * 109.53493 * 186.67683 * 26 14 13 41 41 H 1.08994 * 109.68206 * 66.37111 * 26 14 13 42 42 H 1.08997 * 109.50245 * 298.57322 * 27 11 2 43 43 H 1.09002 * 109.49329 * 58.67585 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1297 1.2437 -0.4502 5 6 1.5842 2.3138 0.5786 6 7 0.4688 2.2100 1.2695 7 14 2.4064 3.9790 0.3770 8 1 2.4884 4.3191 -1.0662 9 1 1.6102 5.0133 1.0853 10 1 3.7746 3.9284 0.9521 11 6 2.1976 -1.2687 -0.0006 12 6 1.8276 -2.0715 1.2487 13 6 2.6211 -3.3819 1.2622 14 7 2.3849 -4.0941 -0.0010 15 6 1.9578 -5.3724 0.0007 16 8 1.7638 -5.9465 1.0535 17 6 1.7243 -6.0787 -1.2840 18 6 0.9065 -7.2083 -1.3339 19 6 0.7213 -7.8317 -2.5596 20 6 -0.1524 -9.0547 -2.6695 21 9 0.3611 -10.0693 -1.8545 22 9 -1.4514 -8.7383 -2.2578 23 7 1.3212 -7.3391 -3.6298 24 6 2.0880 -6.2692 -3.5475 25 7 2.2874 -5.6423 -2.4080 26 6 2.6220 -3.3800 -1.2662 27 6 1.8286 -2.0696 -1.2514 28 1 -0.3633 -0.0791 1.0246 29 1 -0.3633 0.9269 -0.4439 30 1 -0.3633 -0.8478 -0.5808 31 1 0.0734 2.9983 1.6736 32 1 3.2691 -1.0693 0.0000 33 1 0.7604 -2.2926 1.2364 34 1 2.0687 -1.4912 2.1394 35 1 3.6840 -3.1645 1.3659 36 1 2.2914 -4.0002 2.0973 37 1 0.4302 -7.5873 -0.4418 38 1 -0.1718 -9.3955 -3.7047 39 1 2.5621 -5.8940 -4.4423 40 1 2.2913 -3.9979 -2.1011 41 1 3.6849 -3.1625 -1.3714 42 1 0.7614 -2.2907 -1.2402 43 1 2.0708 -1.4875 -2.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985493179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:53 Heat of formation + Delta-G solvation = -38.056170 kcal Electronic energy + Delta-G solvation = -29724.759298 eV Core-core repulsion = 25249.685847 eV Total energy + Delta-G solvation = -4475.073452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.59048 -47.57646 -41.89279 -39.84779 -37.62563 -35.36272 -34.73699 -32.99280 -32.16430 -30.74984 -29.81011 -28.25095 -26.15956 -25.95646 -24.70851 -23.87309 -22.85021 -22.08933 -20.56924 -19.14118 -18.86670 -18.00465 -17.84314 -17.41609 -16.80036 -16.45078 -16.14024 -15.98577 -15.74161 -15.37788 -15.02051 -14.74341 -14.40065 -13.98059 -13.92414 -13.91538 -13.52974 -13.49637 -13.26704 -13.08743 -12.52965 -12.31134 -12.04267 -11.90954 -11.53414 -11.50299 -11.24922 -10.94027 -10.85828 -10.78229 -10.59079 -10.42096 -10.34240 -10.26914 -10.18520 -9.91360 -9.71657 -9.26677 -8.62920 -8.50060 -6.67858 -5.76270 -3.25802 -0.09215 0.13684 2.37385 2.52288 2.68789 3.15038 3.36464 3.41901 3.42420 3.45044 3.54426 3.64781 4.00352 4.26723 4.37666 4.37924 4.46323 4.74114 4.95399 5.19030 5.27863 5.34840 5.46351 5.47594 5.51692 5.73031 5.77152 5.93337 6.09184 6.12559 6.24284 6.30474 6.35244 6.51875 6.56532 6.80914 6.97455 7.00392 7.21583 7.34264 7.35916 7.68802 7.78289 7.90741 8.43007 9.22940 9.84861 10.37811 11.29899 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.022979 B = 0.002419 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.216540 B =11572.138259 C =11693.037668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.258 4.258 4 H 0.065 0.935 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.177 3.823 12 C -0.144 4.144 13 C 0.110 3.890 14 N -0.574 5.574 15 C 0.563 3.437 16 O -0.530 6.530 17 C 0.150 3.850 18 C -0.134 4.134 19 C 0.099 3.901 20 C 0.328 3.672 21 F -0.187 7.187 22 F -0.186 7.186 23 N -0.483 5.483 24 C 0.296 3.704 25 N -0.467 5.467 26 C 0.078 3.922 27 C -0.148 4.148 28 H 0.017 0.983 29 H 0.051 0.949 30 H -0.007 1.007 31 H 0.253 0.747 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.167 0.833 38 H 0.141 0.859 39 H 0.215 0.785 40 H 0.129 0.871 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -21.368 -10.219 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.315 5.315 3 C -0.388 4.388 4 H 0.082 0.918 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.734 3.266 8 H -0.210 1.210 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.069 3.931 12 C -0.184 4.184 13 C -0.012 4.012 14 N -0.305 5.305 15 C 0.348 3.652 16 O -0.407 6.407 17 C 0.002 3.998 18 C -0.157 4.157 19 C -0.050 4.050 20 C 0.273 3.727 21 F -0.168 7.168 22 F -0.167 7.167 23 N -0.197 5.197 24 C 0.009 3.991 25 N -0.184 5.184 26 C -0.044 4.044 27 C -0.188 4.188 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.011 0.989 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.184 0.816 38 H 0.158 0.842 39 H 0.231 0.769 40 H 0.146 0.854 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.949 -21.129 -10.318 23.594 hybrid contribution -0.083 0.848 0.788 1.161 sum 1.866 -20.281 -9.530 22.486 Atomic orbital electron populations 1.20699 0.83069 0.96835 0.97490 1.43882 1.01590 1.00159 1.85892 1.19135 1.01840 0.86783 1.31054 0.91750 1.25171 0.97927 0.98921 0.97293 1.70025 1.20435 1.28447 1.36064 0.86348 0.78775 0.83783 0.77648 1.21027 1.21652 1.20887 1.20346 0.96080 0.86144 0.90540 1.22493 0.99879 0.94135 1.01878 1.21870 1.00385 0.93933 0.85019 1.48161 1.62267 1.10603 1.09457 1.17666 0.78736 0.82324 0.86500 1.90805 1.52657 1.66439 1.30778 1.21852 0.92261 0.92358 0.93338 1.22724 0.97539 0.95128 1.00269 1.22056 0.96337 0.96631 0.89952 1.20096 0.75679 0.81982 0.94899 1.93072 1.86954 1.60518 1.76223 1.93078 1.37918 1.93240 1.92455 1.67962 1.07507 1.12883 1.31341 1.25280 0.90988 0.86640 0.96222 1.68567 1.21891 1.28666 0.99283 1.22941 1.00795 0.94578 0.86100 1.22486 0.99940 0.95074 1.01302 0.96448 0.93009 0.98872 0.93642 0.91844 0.92246 0.90315 0.91052 0.89448 0.81585 0.84204 0.76925 0.85448 0.91145 0.92401 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.99 8.10 59.85 0.48 4.47 16 2 N -0.59 -14.41 2.79 -173.44 -0.48 -14.89 16 3 C -0.26 -6.91 9.52 -15.06 -0.14 -7.05 16 4 H 0.06 1.68 7.84 -52.49 -0.41 1.27 16 5 C 0.01 0.16 5.12 -17.43 -0.09 0.07 16 6 N -0.91 -26.12 10.88 55.49 0.60 -25.52 16 7 Si 0.90 21.48 29.56 -169.99 -5.03 16.45 16 8 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 C 0.18 3.44 2.56 -67.89 -0.17 3.27 16 12 C -0.14 -2.59 5.34 -26.61 -0.14 -2.73 16 13 C 0.11 1.66 6.42 -3.71 -0.02 1.63 16 14 N -0.57 -8.33 2.98 -173.43 -0.52 -8.85 16 15 C 0.56 8.27 7.65 -12.05 -0.09 8.17 16 16 O -0.53 -9.01 16.01 5.39 0.09 -8.92 16 17 C 0.15 1.81 6.51 -82.63 -0.54 1.28 16 18 C -0.13 -1.44 9.32 -38.91 -0.36 -1.80 16 19 C 0.10 0.90 6.31 -82.24 -0.52 0.38 16 20 C 0.33 2.35 5.58 36.00 0.20 2.55 16 21 F -0.19 -1.59 17.27 2.25 0.04 -1.55 16 22 F -0.19 -1.63 17.27 2.25 0.04 -1.59 16 23 N -0.48 -4.14 10.35 -10.81 -0.11 -4.25 16 24 C 0.30 2.36 12.28 -92.26 -1.13 1.23 16 25 N -0.47 -4.84 6.50 -11.14 -0.07 -4.91 16 26 C 0.08 1.04 6.04 -3.56 -0.02 1.02 16 27 C -0.15 -2.40 5.30 -26.61 -0.14 -2.54 16 28 H 0.02 0.45 7.77 -51.93 -0.40 0.05 16 29 H 0.05 1.37 6.98 -51.93 -0.36 1.01 16 30 H -0.01 -0.15 6.48 -51.93 -0.34 -0.49 16 31 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.06 1.24 7.89 -51.93 -0.41 0.83 16 33 H 0.06 1.15 7.72 -51.93 -0.40 0.74 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.34 7.00 -51.92 -0.36 0.98 16 37 H 0.17 1.73 7.86 -52.49 -0.41 1.32 16 38 H 0.14 0.56 8.12 -51.93 -0.42 0.14 16 39 H 0.21 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 1.54 3.98 -77.11 -0.31 1.23 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.00 6.75 -51.93 -0.35 0.65 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 358.30 15.07 5.40 5.40 Total: -1.00 -31.69 358.30 -8.17 -39.85 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: -5.43 Total: -1.17 kcal Atomic # 6 Polarization: 12.64 SS G_CDS: -2.69 Total: 9.95 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: -0.58 Total: -58.42 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.69 -8.17 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985493179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.795 kcal (2) G-P(sol) polarization free energy of solvation -31.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds