Wall clock time and date at job start Sat Apr 11 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36939 * 119.99937 * 2 1 4 4 H 1.08003 * 119.99631 * 202.99273 * 3 2 1 5 5 C 1.38805 * 120.00107 * 22.99381 * 3 2 1 6 6 N 1.31618 * 120.00015 * 11.65024 * 5 3 2 7 7 Si 1.86806 * 120.00009 * 191.64203 * 5 3 2 8 8 H 1.48498 * 109.46836 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.46937 * 120.00316 * 7 5 3 10 10 H 1.48498 * 109.46862 * 240.00029 * 7 5 3 11 11 C 1.46500 * 119.99728 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.45902 * 299.99350 * 11 2 1 13 13 C 1.53186 * 109.31548 * 181.38887 * 12 11 2 14 14 N 1.46922 * 108.89366 * 305.29468 * 13 12 11 15 15 C 1.34777 * 120.63581 * 233.68162 * 14 13 12 16 16 O 1.21282 * 119.99777 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00224 * 180.02562 * 15 14 13 18 18 C 1.53008 * 109.46955 * 179.97438 * 17 15 14 19 19 N 1.46499 * 109.46860 * 179.97438 * 18 17 15 20 20 C 1.35045 * 126.03544 * 125.00529 * 19 18 17 21 21 C 1.35377 * 107.72678 * 179.97438 * 20 19 18 22 22 Cl 1.73595 * 126.04410 * 179.97438 * 21 20 19 23 23 C 1.39931 * 107.90870 * 359.97438 * 21 20 19 24 24 N 1.30858 * 108.21341 * 359.75988 * 23 21 20 25 25 C 1.47213 * 118.55268 * 53.54033 * 14 13 12 26 26 C 1.53038 * 109.46371 * 60.06636 * 11 2 1 27 27 H 1.08996 * 109.46819 * 273.84543 * 1 2 3 28 28 H 1.09004 * 109.46897 * 33.84032 * 1 2 3 29 29 H 1.08997 * 109.47000 * 153.83909 * 1 2 3 30 30 H 0.97000 * 120.00155 * 180.02562 * 6 5 3 31 31 H 1.09006 * 109.44942 * 180.02562 * 11 2 1 32 32 H 1.09004 * 109.49852 * 61.43301 * 12 11 2 33 33 H 1.09005 * 109.52665 * 301.36310 * 12 11 2 34 34 H 1.09006 * 109.58655 * 65.15569 * 13 12 11 35 35 H 1.09004 * 109.58745 * 185.43600 * 13 12 11 36 36 H 1.08996 * 109.47321 * 300.00003 * 17 15 14 37 37 H 1.09000 * 109.47145 * 60.00313 * 17 15 14 38 38 H 1.09003 * 109.46949 * 299.99987 * 18 17 15 39 39 H 1.09000 * 109.46773 * 60.00288 * 18 17 15 40 40 H 1.07995 * 126.13673 * 359.93570 * 20 19 18 41 41 H 1.07996 * 125.89394 * 180.02562 * 23 21 20 42 42 H 1.09005 * 109.53203 * 186.67369 * 25 14 13 43 43 H 1.08992 * 109.67571 * 66.36708 * 25 14 13 44 44 H 1.09004 * 109.49564 * 298.56276 * 26 11 2 45 45 H 1.08990 * 109.49601 * 58.62788 * 26 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2230 -0.3654 5 6 1.5384 2.3403 0.4696 6 7 0.3980 2.2623 1.1221 7 14 2.3343 4.0045 0.1755 8 1 3.6013 3.8212 -0.5771 9 1 1.4118 4.8624 -0.6106 10 1 2.6222 4.6529 1.4801 11 6 2.1975 -1.2688 -0.0006 12 6 1.8276 -2.0715 1.2488 13 6 2.6212 -3.3817 1.2625 14 7 2.3853 -4.0940 -0.0006 15 6 1.9583 -5.3724 0.0011 16 8 1.7656 -5.9458 1.0523 17 6 1.7215 -6.0896 -1.3029 18 6 1.2451 -7.5161 -1.0212 19 7 1.0143 -8.2130 -2.2890 20 6 1.5657 -9.3882 -2.6613 21 6 1.0993 -9.6895 -3.8960 22 17 1.5041 -11.0991 -4.8249 23 6 0.2333 -8.6639 -4.2909 24 7 0.1775 -7.7814 -3.3262 25 6 2.6225 -3.3800 -1.2660 26 6 1.8288 -2.0698 -1.2514 27 1 -0.3633 0.0689 1.0253 28 1 -0.3633 0.8536 -0.5723 29 1 -0.3633 -0.9224 -0.4531 30 1 -0.0294 3.0689 1.4500 31 1 3.2691 -1.0692 0.0000 32 1 0.7603 -2.2926 1.2364 33 1 2.0684 -1.4909 2.1394 34 1 3.6842 -3.1640 1.3663 35 1 2.2916 -3.9998 2.0977 36 1 0.9616 -5.5590 -1.8766 37 1 2.6499 -6.1229 -1.8731 38 1 2.0054 -8.0464 -0.4477 39 1 0.3168 -7.4831 -0.4509 40 1 2.2555 -9.9810 -2.0789 41 1 -0.3007 -8.6118 -5.2282 42 1 2.2919 -3.9982 -2.1008 43 1 3.6853 -3.1623 -1.3709 44 1 0.7615 -2.2911 -1.2402 45 1 2.0704 -1.4876 -2.1405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985803966.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:59 Heat of formation + Delta-G solvation = 62.378305 kcal Electronic energy + Delta-G solvation = -26977.473252 eV Core-core repulsion = 23058.551647 eV Total energy + Delta-G solvation = -3918.921606 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65460 -40.19252 -37.71250 -36.76735 -35.14364 -34.62533 -32.32589 -31.35175 -30.63362 -29.93168 -29.36145 -26.04191 -25.59925 -24.38755 -22.85772 -22.10556 -21.59951 -21.17768 -19.80409 -18.58893 -17.99577 -16.86520 -16.72205 -16.31628 -15.96053 -15.22413 -15.07411 -14.95684 -14.58346 -14.05884 -13.97056 -13.75484 -13.64364 -13.45712 -13.34330 -13.00425 -12.75333 -12.35381 -12.33623 -12.03320 -11.81754 -11.74698 -11.63161 -11.50733 -10.99687 -10.89754 -10.83094 -10.81597 -10.42605 -10.26935 -10.18825 -9.98291 -9.89447 -9.85231 -9.62498 -8.80485 -8.63756 -8.54185 -6.78238 -5.75000 -3.21742 1.34044 1.56611 2.21652 2.39597 2.50488 2.99523 3.34836 3.42076 3.43864 4.06976 4.28212 4.37585 4.45111 4.47294 4.62302 4.89002 4.96880 5.05247 5.17648 5.19554 5.30363 5.34960 5.35788 5.44378 5.45192 5.55499 5.71074 5.83439 5.95314 5.97569 6.09872 6.18996 6.30370 6.40878 6.47497 6.53326 6.75965 6.92732 6.95591 7.15007 7.37092 7.38585 7.71345 7.78322 8.05469 8.37364 9.21074 9.84427 10.33763 11.29754 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.024654 B = 0.001923 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.455831 B =14553.359960 C =15075.114349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.179 3.821 12 C -0.145 4.145 13 C 0.113 3.887 14 N -0.601 5.601 15 C 0.520 3.480 16 O -0.552 6.552 17 C -0.153 4.153 18 C 0.151 3.849 19 N -0.362 5.362 20 C 0.076 3.924 21 C -0.192 4.192 22 Cl -0.046 7.046 23 C 0.063 3.937 24 N -0.277 5.277 25 C 0.108 3.892 26 C -0.148 4.148 27 H 0.027 0.973 28 H 0.042 0.958 29 H -0.003 1.003 30 H 0.252 0.748 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.184 0.816 41 H 0.191 0.809 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -23.748 -8.851 25.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.185 4.185 13 C -0.010 4.010 14 N -0.334 5.334 15 C 0.308 3.692 16 O -0.431 6.431 17 C -0.194 4.194 18 C 0.030 3.970 19 N -0.144 5.144 20 C -0.073 4.073 21 C -0.230 4.230 22 Cl -0.018 7.018 23 C -0.123 4.123 24 N -0.099 5.099 25 C -0.015 4.015 26 C -0.188 4.188 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.015 0.985 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.117 0.883 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.201 0.799 41 H 0.208 0.792 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.062 -22.786 -7.763 24.266 hybrid contribution 0.691 0.197 -0.517 0.885 sum 3.753 -22.589 -8.280 24.350 Atomic orbital electron populations 1.20737 0.82736 0.95438 0.99115 1.43957 1.01792 1.00155 1.85851 1.19253 0.98262 0.85502 1.35397 0.91406 1.25043 0.97797 0.98565 0.98318 1.70077 1.18499 1.27060 1.39560 0.86192 0.78605 0.84357 0.77421 1.20347 1.21665 1.21754 1.20278 0.96014 0.86109 0.90542 1.22506 0.99996 0.94357 1.01632 1.21729 0.99917 0.93821 0.85495 1.48227 1.65210 1.11515 1.08443 1.20176 0.76803 0.81860 0.90406 1.90699 1.52735 1.66301 1.33403 1.21906 1.04637 0.95456 0.97371 1.21566 1.04045 0.91886 0.79488 1.48632 1.34009 1.16562 1.15158 1.22304 0.99561 0.89614 0.95774 1.20786 1.10348 0.95898 0.95999 1.98330 1.93259 1.37989 1.72174 1.23919 0.98160 0.91043 0.99224 1.77538 1.13275 1.22681 0.96361 1.21909 1.00591 0.94315 0.84684 1.22482 1.00183 0.94620 1.01557 0.95476 0.93906 0.98476 0.93803 0.91911 0.92216 0.90527 0.91626 0.89577 0.87157 0.88299 0.87327 0.88221 0.79940 0.79183 0.90411 0.91136 0.91850 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 8.03 59.85 0.48 4.44 16 2 N -0.60 -14.24 2.81 -173.44 -0.49 -14.73 16 3 C -0.25 -6.75 9.59 -15.06 -0.14 -6.90 16 4 H 0.07 1.75 7.82 -52.48 -0.41 1.34 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -26.11 10.64 55.49 0.59 -25.52 16 7 Si 0.90 21.47 29.57 -169.99 -5.03 16.45 16 8 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 C 0.18 3.36 2.55 -67.89 -0.17 3.19 16 12 C -0.14 -2.52 5.34 -26.62 -0.14 -2.66 16 13 C 0.11 1.61 6.42 -3.72 -0.02 1.59 16 14 N -0.60 -7.77 2.98 -172.54 -0.51 -8.29 16 15 C 0.52 6.49 7.70 -10.99 -0.08 6.40 16 16 O -0.55 -8.44 15.39 5.56 0.09 -8.36 16 17 C -0.15 -1.40 4.25 -27.88 -0.12 -1.51 16 18 C 0.15 1.27 5.80 -4.04 -0.02 1.24 16 19 N -0.36 -3.25 3.68 -61.32 -0.23 -3.48 16 20 C 0.08 0.58 11.43 -17.16 -0.20 0.38 16 21 C -0.19 -1.59 6.65 -39.97 -0.27 -1.86 16 22 Cl -0.05 -0.35 29.30 -51.86 -1.52 -1.87 16 23 C 0.06 0.56 12.02 -17.33 -0.21 0.35 16 24 N -0.28 -2.92 12.42 30.64 0.38 -2.54 16 25 C 0.11 1.25 6.35 -3.55 -0.02 1.23 16 26 C -0.15 -2.26 5.32 -26.61 -0.14 -2.40 16 27 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 28 H 0.04 1.12 7.22 -51.93 -0.37 0.75 16 29 H 0.00 -0.07 6.46 -51.93 -0.34 -0.40 16 30 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 32 H 0.06 1.12 7.72 -51.93 -0.40 0.72 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 1.28 7.00 -51.93 -0.36 0.92 16 36 H 0.11 1.06 7.69 -51.93 -0.40 0.66 16 37 H 0.10 0.76 7.96 -51.93 -0.41 0.35 16 38 H 0.11 0.74 8.03 -51.93 -0.42 0.33 16 39 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.03 6.72 -51.93 -0.35 0.68 16 45 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -31.72 377.67 -8.84 -40.55 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -6.66 Total: -1.34 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -1.15 Total: 3.43 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.26 Total: -54.55 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.72 -8.84 -40.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985803966.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.932 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds