Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47314 * 2 1 4 4 N 1.28431 * 125.18923 * 276.60018 * 3 2 1 5 5 C 1.30837 * 110.98278 * 179.97438 * 4 3 2 6 6 C 1.39807 * 107.87583 * 359.77632 * 5 4 3 7 7 Cl 1.73594 * 127.33932 * 180.26882 * 6 5 4 8 8 C 1.36743 * 125.18119 * 96.56150 * 3 2 1 9 9 C 1.47022 * 126.91065 * 359.97438 * 8 3 2 10 10 O 1.21648 * 120.00422 * 265.40689 * 9 8 3 11 11 N 1.34779 * 119.99974 * 85.41159 * 9 8 3 12 12 C 1.46506 * 120.00255 * 175.15303 * 11 9 8 13 13 H 1.09001 * 109.49290 * 325.05839 * 12 11 9 14 14 C 1.53038 * 109.52402 * 85.14270 * 12 11 9 15 15 C 1.53040 * 109.53530 * 181.33577 * 14 12 11 16 16 C 1.53628 * 109.23993 * 298.50886 * 15 14 12 17 17 N 1.46920 * 108.54121 * 54.85880 * 16 15 14 18 18 C 1.36939 * 120.62975 * 126.37107 * 17 16 15 19 19 H 1.08002 * 120.00094 * 210.54592 * 18 17 16 20 20 C 1.38812 * 120.00203 * 30.54316 * 18 17 16 21 21 N 1.31626 * 119.99456 * 25.42467 * 20 18 17 22 22 Si 1.86796 * 120.00229 * 205.41734 * 20 18 17 23 23 H 1.48508 * 109.47141 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47402 * 300.00198 * 22 20 18 25 25 H 1.48499 * 109.46852 * 60.00534 * 22 20 18 26 26 C 1.46930 * 118.73893 * 306.09156 * 17 16 15 27 27 H 1.09001 * 109.58160 * 294.07085 * 26 17 16 28 28 C 1.53004 * 109.58359 * 173.79300 * 26 17 16 29 29 H 1.09004 * 109.46552 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47544 * 59.99438 * 1 2 3 31 31 H 1.08997 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46552 * 240.00182 * 2 1 3 33 33 H 1.08996 * 109.47544 * 120.00562 * 2 1 3 34 34 H 1.07995 * 126.06112 * 180.02562 * 5 4 3 35 35 H 0.96999 * 119.99805 * 355.14910 * 11 9 8 36 36 H 1.09002 * 109.45885 * 301.35411 * 14 12 11 37 37 H 1.09001 * 109.46210 * 61.32727 * 14 12 11 38 38 H 1.08998 * 109.50131 * 58.58539 * 15 14 12 39 39 H 1.09003 * 109.49559 * 178.65307 * 15 14 12 40 40 H 1.09005 * 109.73836 * 295.11814 * 16 15 14 41 41 H 1.09002 * 109.66148 * 174.55151 * 16 15 14 42 42 H 0.96998 * 120.00481 * 4.99880 * 21 20 18 43 43 H 1.09004 * 109.47246 * 60.00137 * 28 26 17 44 44 H 1.09000 * 109.46452 * 179.97438 * 28 26 17 45 45 H 1.08992 * 109.47358 * 299.99845 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1513 2.1192 -1.0426 5 6 2.6085 3.3029 -0.7236 6 6 2.7842 3.3357 0.6630 7 17 3.3612 4.6640 1.6201 8 6 2.4014 2.0815 1.1103 9 6 2.4009 1.6021 2.5002 10 8 1.4469 1.8266 3.2208 11 7 3.4576 0.9140 2.9761 12 6 3.5047 0.5285 4.3887 13 1 3.0409 1.3073 4.9940 14 6 2.7501 -0.7884 4.5849 15 6 2.7707 -1.1743 6.0657 16 6 4.2254 -1.3794 6.5153 17 7 4.9881 -0.1644 6.1980 18 6 5.7132 0.4770 7.1666 19 1 5.8536 1.5466 7.1167 20 6 6.2677 -0.2477 8.2126 21 7 6.5467 -1.5242 8.0537 22 14 6.6182 0.5887 9.8457 23 1 7.2059 -0.3955 10.7899 24 1 7.5753 1.7043 9.6352 25 1 5.3525 1.1221 10.4103 26 6 4.9631 0.3459 4.8204 27 1 5.4540 -0.3670 4.1578 28 6 5.6917 1.6898 4.7581 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8100 4.1126 -1.4093 35 1 4.1869 0.6740 2.3833 36 1 1.7181 -0.6681 4.2553 37 1 3.2295 -1.5725 3.9988 38 1 2.3138 -0.3795 6.6553 39 1 2.2127 -2.0998 6.2083 40 1 4.6572 -2.2301 5.9879 41 1 4.2552 -1.5595 7.5899 42 1 6.4330 -1.9410 7.1852 43 1 6.7257 1.5577 5.0768 44 1 5.6724 2.0664 3.7353 45 1 5.1966 2.4026 5.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993370748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 51.376994 kcal Electronic energy + Delta-G solvation = -28451.176793 eV Core-core repulsion = 24531.778134 eV Total energy + Delta-G solvation = -3919.398658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.88700 -39.79483 -37.82085 -36.76113 -34.89581 -34.62847 -32.82542 -31.93073 -31.00313 -30.12229 -29.05161 -26.39402 -25.03960 -24.55638 -23.55623 -22.01106 -21.52204 -20.98840 -20.19641 -19.47430 -18.28919 -17.04886 -16.52845 -16.41041 -15.73782 -15.56128 -14.77075 -14.70770 -14.56951 -14.31946 -14.04723 -13.69717 -13.59602 -13.45974 -13.23164 -13.20982 -12.63376 -12.55108 -12.07243 -11.99197 -11.89567 -11.73231 -11.42002 -11.32079 -11.15926 -10.78314 -10.71680 -10.48659 -10.46303 -10.30073 -10.16342 -10.06563 -9.90700 -9.57112 -9.27147 -8.99733 -8.93128 -8.38857 -6.94060 -6.11042 -3.30386 1.22850 1.54189 2.15808 2.21961 2.58534 3.08391 3.48046 3.51926 3.69133 4.08881 4.35573 4.47436 4.56642 4.61855 4.72426 4.92666 5.08229 5.10911 5.16368 5.23457 5.32677 5.35004 5.47453 5.55159 5.66918 5.73213 5.86937 5.88819 6.03395 6.16937 6.28381 6.29330 6.31297 6.36740 6.47792 6.50184 6.57556 6.82113 6.94447 7.03348 7.13211 7.40369 7.61793 7.98697 8.05002 8.54026 9.04915 9.79554 10.22669 11.16955 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003301 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.640032 B = 8480.396924 C = 9597.972616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.115 3.885 3 N -0.263 5.263 4 N -0.272 5.272 5 C 0.022 3.978 6 C -0.116 4.116 7 Cl -0.017 7.017 8 C -0.006 4.006 9 C 0.588 3.412 10 O -0.513 6.513 11 N -0.701 5.701 12 C 0.131 3.869 13 H 0.090 0.910 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.150 3.850 17 N -0.587 5.587 18 C -0.352 4.352 19 H 0.061 0.939 20 C -0.019 4.019 21 N -0.912 5.912 22 Si 1.062 2.938 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.169 3.831 27 H 0.025 0.975 28 C -0.134 4.134 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.194 0.806 35 H 0.399 0.601 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.078 0.922 42 H 0.269 0.731 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 3.841 -18.061 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.052 5.052 4 N -0.102 5.102 5 C -0.156 4.156 6 C -0.154 4.154 7 Cl 0.012 6.988 8 C -0.137 4.137 9 C 0.369 3.631 10 O -0.386 6.386 11 N -0.351 5.351 12 C 0.026 3.974 13 H 0.108 0.892 14 C -0.156 4.156 15 C -0.174 4.174 16 C 0.024 3.976 17 N -0.312 5.312 18 C -0.481 4.481 19 H 0.079 0.921 20 C -0.222 4.222 21 N -0.551 5.551 22 Si 0.892 3.108 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.220 1.220 26 C 0.062 3.938 27 H 0.043 0.957 28 C -0.191 4.191 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.211 0.789 35 H 0.233 0.767 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.036 0.964 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.088 3.058 -16.739 19.291 hybrid contribution 0.084 0.837 -1.250 1.507 sum -9.004 3.895 -17.989 20.490 Atomic orbital electron populations 1.22177 0.92887 1.03916 1.03940 1.22128 0.96698 0.76004 1.05582 1.45755 1.45141 1.12309 1.02010 1.73203 1.19516 1.03944 1.13546 1.23509 1.03568 0.95721 0.92790 1.21267 1.10897 0.90467 0.92786 1.98373 1.86918 1.43002 1.70552 1.21416 1.08557 0.93638 0.90089 1.16842 0.83577 0.78563 0.84135 1.90876 1.33988 1.55879 1.57870 1.46147 1.21442 1.54948 1.12602 1.21916 0.99885 0.97040 0.78576 0.89189 1.21767 0.99336 0.96530 0.97964 1.22134 1.00131 1.00421 0.94729 1.21082 0.87681 0.88297 1.00491 1.44113 1.53999 1.29599 1.03440 1.19912 1.31038 0.92288 1.04881 0.92129 1.25865 0.95797 0.96997 1.03508 1.70791 1.43984 1.12961 1.27412 0.83559 0.76158 0.74886 0.76188 1.21139 1.21930 1.21960 1.20550 0.90045 0.94834 0.88388 0.95706 1.21786 1.01602 0.96611 0.99146 0.91224 0.91143 0.89693 0.87399 0.88053 0.78869 0.76685 0.92797 0.92670 0.91999 0.92694 0.96355 0.90332 0.92073 0.91669 0.94258 0.92541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 10.24 37.16 0.38 -0.92 16 2 C 0.12 0.93 6.92 -4.04 -0.03 0.90 16 3 N -0.26 -2.92 3.35 -57.11 -0.19 -3.12 16 4 N -0.27 -3.07 11.89 30.61 0.36 -2.71 16 5 C 0.02 0.24 12.04 -17.39 -0.21 0.03 16 6 C -0.12 -1.46 6.89 -38.88 -0.27 -1.72 16 7 Cl -0.02 -0.21 29.23 -51.86 -1.52 -1.73 16 8 C -0.01 -0.08 6.72 -82.00 -0.55 -0.64 16 9 C 0.59 8.75 6.85 -12.70 -0.09 8.66 16 10 O -0.51 -9.46 16.80 5.23 0.09 -9.37 16 11 N -0.70 -9.79 4.58 -54.89 -0.25 -10.04 16 12 C 0.13 2.23 1.96 -67.81 -0.13 2.10 16 13 H 0.09 1.80 7.65 -51.93 -0.40 1.40 16 14 C -0.12 -1.91 5.46 -26.69 -0.15 -2.06 16 15 C -0.13 -2.45 6.10 -26.38 -0.16 -2.61 16 16 C 0.15 3.32 4.77 -3.49 -0.02 3.30 16 17 N -0.59 -13.72 2.80 -164.51 -0.46 -14.19 16 18 C -0.35 -9.26 8.42 -15.06 -0.13 -9.39 16 19 H 0.06 1.60 6.35 -52.49 -0.33 1.27 16 20 C -0.02 -0.51 4.65 -17.43 -0.08 -0.59 16 21 N -0.91 -26.30 12.56 55.49 0.70 -25.60 16 22 Si 1.06 24.63 29.99 -169.99 -5.10 19.54 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.17 3.27 3.02 -67.60 -0.20 3.06 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 C -0.13 -2.48 7.85 37.16 0.29 -2.19 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.78 7.62 -51.93 -0.40 0.39 16 34 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.40 4.74 8.59 -40.82 -0.35 4.39 16 36 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 41 H 0.08 1.96 6.53 -51.93 -0.34 1.62 16 42 H 0.27 7.77 6.85 -40.82 -0.28 7.49 16 43 H 0.06 1.31 7.64 -51.93 -0.40 0.91 16 44 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 45 H 0.06 1.11 7.43 -51.93 -0.39 0.73 16 LS Contribution 380.07 15.07 5.73 5.73 Total: -1.00 -31.35 380.07 -8.70 -40.04 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -6.71 Total: 3.52 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -1.34 Total: -2.07 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.16 Total: -55.65 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.10 Total: 19.54 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.35 -8.70 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993370748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.417 kcal (2) G-P(sol) polarization free energy of solvation -31.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds