Wall clock time and date at job start Sat Apr 11 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47314 * 2 1 4 4 N 1.28431 * 125.18923 * 276.60018 * 3 2 1 5 5 C 1.30837 * 110.98278 * 179.97438 * 4 3 2 6 6 C 1.39807 * 107.87583 * 359.77632 * 5 4 3 7 7 Cl 1.73594 * 127.33932 * 180.26882 * 6 5 4 8 8 C 1.36743 * 125.18119 * 96.56150 * 3 2 1 9 9 C 1.47022 * 126.91065 * 359.97438 * 8 3 2 10 10 O 1.21648 * 120.00422 * 265.40689 * 9 8 3 11 11 N 1.34779 * 119.99974 * 85.41159 * 9 8 3 12 12 C 1.46506 * 120.00255 * 175.15303 * 11 9 8 13 13 H 1.09001 * 109.49290 * 325.05839 * 12 11 9 14 14 C 1.53038 * 109.52402 * 85.14270 * 12 11 9 15 15 C 1.53040 * 109.53530 * 181.33577 * 14 12 11 16 16 C 1.53628 * 109.23993 * 298.50886 * 15 14 12 17 17 N 1.46920 * 108.54121 * 54.85880 * 16 15 14 18 18 C 1.36939 * 120.62975 * 126.37107 * 17 16 15 19 19 H 1.08002 * 120.00094 * 210.54592 * 18 17 16 20 20 C 1.38812 * 120.00203 * 30.54316 * 18 17 16 21 21 N 1.31626 * 119.99456 * 25.42467 * 20 18 17 22 22 Si 1.86796 * 120.00229 * 205.41734 * 20 18 17 23 23 H 1.48508 * 109.47141 * 180.02562 * 22 20 18 24 24 H 1.48493 * 109.47402 * 300.00198 * 22 20 18 25 25 H 1.48499 * 109.46852 * 60.00534 * 22 20 18 26 26 C 1.46930 * 118.73893 * 306.09156 * 17 16 15 27 27 H 1.09001 * 109.58160 * 294.07085 * 26 17 16 28 28 C 1.53004 * 109.58359 * 173.79300 * 26 17 16 29 29 H 1.09004 * 109.46552 * 299.99818 * 1 2 3 30 30 H 1.08996 * 109.47544 * 59.99438 * 1 2 3 31 31 H 1.08997 * 109.47142 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46552 * 240.00182 * 2 1 3 33 33 H 1.08996 * 109.47544 * 120.00562 * 2 1 3 34 34 H 1.07995 * 126.06112 * 180.02562 * 5 4 3 35 35 H 0.96999 * 119.99805 * 355.14910 * 11 9 8 36 36 H 1.09002 * 109.45885 * 301.35411 * 14 12 11 37 37 H 1.09001 * 109.46210 * 61.32727 * 14 12 11 38 38 H 1.08998 * 109.50131 * 58.58539 * 15 14 12 39 39 H 1.09003 * 109.49559 * 178.65307 * 15 14 12 40 40 H 1.09005 * 109.73836 * 295.11814 * 16 15 14 41 41 H 1.09002 * 109.66148 * 174.55151 * 16 15 14 42 42 H 0.96998 * 120.00481 * 4.99880 * 21 20 18 43 43 H 1.09004 * 109.47246 * 60.00137 * 28 26 17 44 44 H 1.09000 * 109.46452 * 179.97438 * 28 26 17 45 45 H 1.08992 * 109.47358 * 299.99845 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1513 2.1192 -1.0426 5 6 2.6085 3.3029 -0.7236 6 6 2.7842 3.3357 0.6630 7 17 3.3612 4.6640 1.6201 8 6 2.4014 2.0815 1.1103 9 6 2.4009 1.6021 2.5002 10 8 1.4469 1.8266 3.2208 11 7 3.4576 0.9140 2.9761 12 6 3.5047 0.5285 4.3887 13 1 3.0409 1.3073 4.9940 14 6 2.7501 -0.7884 4.5849 15 6 2.7707 -1.1743 6.0657 16 6 4.2254 -1.3794 6.5153 17 7 4.9881 -0.1644 6.1980 18 6 5.7132 0.4770 7.1666 19 1 5.8536 1.5466 7.1167 20 6 6.2677 -0.2477 8.2126 21 7 6.5467 -1.5242 8.0537 22 14 6.6182 0.5887 9.8457 23 1 7.2059 -0.3955 10.7899 24 1 7.5753 1.7043 9.6352 25 1 5.3525 1.1221 10.4103 26 6 4.9631 0.3459 4.8204 27 1 5.4540 -0.3670 4.1578 28 6 5.6917 1.6898 4.7581 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.8100 4.1126 -1.4093 35 1 4.1869 0.6740 2.3833 36 1 1.7181 -0.6681 4.2553 37 1 3.2295 -1.5725 3.9988 38 1 2.3138 -0.3795 6.6553 39 1 2.2127 -2.0998 6.2083 40 1 4.6572 -2.2301 5.9879 41 1 4.2552 -1.5595 7.5899 42 1 6.4330 -1.9410 7.1852 43 1 6.7257 1.5577 5.0768 44 1 5.6724 2.0664 3.7353 45 1 5.1966 2.4026 5.4174 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993370748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:06 Heat of formation + Delta-G solvation = 32.145202 kcal Electronic energy + Delta-G solvation = -28452.010746 eV Core-core repulsion = 24531.778134 eV Total energy + Delta-G solvation = -3920.232611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.76303 -41.11957 -39.36320 -37.71106 -36.20059 -35.60198 -34.42973 -33.54366 -32.18634 -30.88117 -30.61231 -27.97637 -26.82508 -25.42414 -24.71587 -23.23141 -22.70377 -22.53149 -21.40945 -20.87392 -19.42525 -18.83162 -17.71411 -17.38447 -16.88015 -16.54818 -16.37253 -16.00091 -15.76379 -15.51685 -15.45833 -15.12141 -14.99123 -14.88078 -14.53891 -14.25925 -13.93585 -13.54155 -13.16153 -13.08603 -13.01266 -12.91737 -12.81996 -12.76926 -12.57149 -12.38424 -12.08002 -11.97241 -11.93129 -11.83441 -11.74894 -11.63371 -11.45986 -11.06468 -10.49444 -10.42089 -10.22678 -9.90728 -8.89539 -8.19941 -5.37691 0.27806 0.64337 1.09628 1.36065 1.56273 1.60345 1.66015 1.84416 2.00012 2.66654 3.22483 3.27615 3.39627 3.52976 3.76826 3.85165 3.87383 3.90326 4.06735 4.10199 4.17308 4.22026 4.25711 4.34869 4.50114 4.61846 4.63986 4.69342 4.71364 4.81751 4.91503 5.01298 5.04399 5.07105 5.09088 5.12343 5.25715 5.27139 5.35463 5.49236 5.51911 5.95451 6.22691 6.45144 6.76158 6.85655 7.09059 7.80533 8.24273 9.05059 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003301 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.640032 B = 8480.396924 C = 9597.972616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.105 3.895 3 N -0.257 5.257 4 N -0.274 5.274 5 C 0.027 3.973 6 C -0.126 4.126 7 Cl -0.023 7.023 8 C -0.024 4.024 9 C 0.598 3.402 10 O -0.551 6.551 11 N -0.688 5.688 12 C 0.148 3.852 13 H 0.060 0.940 14 C -0.109 4.109 15 C -0.124 4.124 16 C 0.155 3.845 17 N -0.606 5.606 18 C -0.348 4.348 19 H 0.055 0.945 20 C -0.068 4.068 21 N -0.940 5.940 22 Si 1.106 2.894 23 H -0.293 1.293 24 H -0.277 1.277 25 H -0.284 1.284 26 C 0.167 3.833 27 H 0.036 0.964 28 C -0.125 4.125 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.224 0.776 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.042 0.958 42 H 0.256 0.744 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.231 3.965 -20.338 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.046 5.046 4 N -0.104 5.104 5 C -0.150 4.150 6 C -0.164 4.164 7 Cl 0.005 6.995 8 C -0.155 4.155 9 C 0.381 3.619 10 O -0.427 6.427 11 N -0.339 5.339 12 C 0.042 3.958 13 H 0.079 0.921 14 C -0.147 4.147 15 C -0.164 4.164 16 C 0.030 3.970 17 N -0.331 5.331 18 C -0.478 4.478 19 H 0.073 0.927 20 C -0.266 4.266 21 N -0.582 5.582 22 Si 0.932 3.068 23 H -0.219 1.219 24 H -0.203 1.203 25 H -0.211 1.211 26 C 0.060 3.940 27 H 0.053 0.947 28 C -0.182 4.182 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.124 0.876 34 H 0.241 0.759 35 H 0.250 0.750 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.090 0.910 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.690 3.187 -19.072 21.628 hybrid contribution 0.238 0.815 -0.642 1.064 sum -9.452 4.002 -19.714 22.226 Atomic orbital electron populations 1.22145 0.92569 1.05119 1.02505 1.22485 0.96956 0.74773 1.07104 1.46065 1.44304 1.13028 1.01199 1.73229 1.19494 1.04267 1.13443 1.23995 1.02478 0.96192 0.92375 1.21473 1.11239 0.90127 0.93606 1.98370 1.86994 1.43282 1.70850 1.21134 1.10339 0.94409 0.89605 1.16954 0.82782 0.77574 0.84636 1.90862 1.35417 1.57240 1.59143 1.45891 1.21889 1.54695 1.11426 1.21425 0.97855 0.96700 0.79798 0.92130 1.21693 1.00024 0.96393 0.96630 1.21994 0.97364 1.01190 0.95854 1.20956 0.89923 0.87814 0.98351 1.44319 1.54102 1.29820 1.04828 1.20088 1.30006 0.92203 1.05515 0.92738 1.26977 0.96170 0.97084 1.06340 1.70896 1.46635 1.13946 1.26700 0.82958 0.76550 0.74330 0.73004 1.21910 1.20300 1.21086 1.20693 0.91693 0.95071 0.86527 0.94675 1.21685 0.99932 0.95951 1.00639 0.93797 0.91294 0.87219 0.84782 0.87645 0.75943 0.75044 0.91723 0.90776 0.93555 0.90174 0.96720 0.93904 0.93432 0.93584 0.91047 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 71.98 0.74 -1.41 16 2 C 0.10 1.40 6.92 86.38 0.60 2.00 16 3 N -0.26 -5.10 3.35 -334.59 -1.12 -6.22 16 4 N -0.27 -5.45 11.89 -57.07 -0.68 -6.13 16 5 C 0.03 0.50 12.04 85.22 1.03 1.53 16 6 C -0.13 -2.93 6.89 22.73 0.16 -2.77 16 7 Cl -0.02 -0.56 29.23 -2.72 -0.08 -0.64 16 8 C -0.02 -0.58 6.72 40.76 0.27 -0.31 16 9 C 0.60 17.00 6.85 86.55 0.59 17.59 16 10 O -0.55 -20.01 16.80 -4.18 -0.07 -20.08 16 11 N -0.69 -17.97 4.58 -445.82 -2.04 -20.01 16 12 C 0.15 4.89 1.96 45.06 0.09 4.98 16 13 H 0.06 2.42 7.65 -2.39 -0.02 2.40 16 14 C -0.11 -3.35 5.46 30.62 0.17 -3.18 16 15 C -0.12 -4.45 6.10 30.82 0.19 -4.26 16 16 C 0.16 6.93 4.77 86.51 0.41 7.34 16 17 N -0.61 -28.60 2.80 -674.38 -1.89 -30.49 16 18 C -0.35 -18.62 8.42 84.03 0.71 -17.91 16 19 H 0.05 2.93 6.35 -2.91 -0.02 2.92 16 20 C -0.07 -3.78 4.65 84.86 0.39 -3.39 16 21 N -0.94 -55.53 12.56 21.65 0.27 -55.26 16 22 Si 1.11 50.45 29.99 68.60 2.06 52.50 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 24 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 26 C 0.17 6.31 3.02 44.97 0.14 6.45 16 27 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 28 C -0.12 -4.55 7.85 71.98 0.56 -3.99 16 29 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.11 1.33 7.62 -2.39 -0.02 1.31 16 34 H 0.22 2.55 8.06 -2.91 -0.02 2.53 16 35 H 0.41 8.73 8.59 -92.71 -0.80 7.94 16 36 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 37 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.01 0.67 7.88 -2.38 -0.02 0.65 16 41 H 0.04 2.20 6.53 -2.39 -0.02 2.19 16 42 H 0.26 15.26 6.85 -92.71 -0.64 14.63 16 43 H 0.05 1.84 7.64 -2.38 -0.02 1.82 16 44 H 0.07 2.10 7.81 -2.39 -0.02 2.09 16 45 H 0.04 1.56 7.43 -2.39 -0.02 1.54 16 Total: -1.00 -69.29 380.07 2.84 -66.45 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.35 Total: 17.20 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: 6.04 Total: 2.67 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -5.46 Total: -118.11 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.07 Total: -20.08 kcal Atomic # 14 Polarization: 50.45 SS G_CDS: 2.06 Total: 52.50 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -69.29 2.84 -66.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993370748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.597 kcal (2) G-P(sol) polarization free energy of solvation -69.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds