Wall clock time and date at job start Sat Apr 11 2020 06:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34255 * 125.75362 * 2 1 4 4 C 1.38044 * 107.41635 * 179.97438 * 3 2 1 5 5 C 1.47430 * 126.41533 * 179.97438 * 4 3 2 6 6 O 1.21599 * 120.00264 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00084 * 0.02708 * 5 4 3 8 8 C 1.46499 * 120.00510 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47646 * 179.97438 * 8 7 5 10 10 C 1.29454 * 117.69167 * 94.99717 * 9 8 7 11 11 C 1.50321 * 123.64703 * 180.85775 * 10 9 8 12 12 N 1.47000 * 109.17019 * 349.02924 * 11 10 9 13 13 C 1.36941 * 121.37691 * 222.96901 * 12 11 10 14 14 H 1.08001 * 119.99896 * 155.96053 * 13 12 11 15 15 C 1.38810 * 119.99947 * 335.96718 * 13 12 11 16 16 N 1.31622 * 120.00078 * 344.52257 * 15 13 12 17 17 Si 1.86801 * 120.00243 * 164.52307 * 15 13 12 18 18 H 1.48495 * 109.46946 * 59.99622 * 17 15 13 19 19 H 1.48498 * 109.47079 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47223 * 300.00011 * 17 15 13 21 21 C 1.47339 * 117.25195 * 42.94258 * 12 11 10 22 22 C 1.49969 * 117.69574 * 274.74244 * 9 8 7 23 23 C 1.41294 * 107.17244 * 0.02562 * 4 3 2 24 24 C 1.50691 * 125.98828 * 180.02562 * 23 4 3 25 25 F 1.39901 * 109.47167 * 299.99375 * 24 23 4 26 26 F 1.39894 * 109.47627 * 59.99991 * 24 23 4 27 27 N 1.30443 * 108.01721 * 359.74194 * 23 4 3 28 28 H 1.08996 * 109.46751 * 89.99528 * 1 2 3 29 29 H 1.08999 * 109.47049 * 209.99632 * 1 2 3 30 30 H 1.09000 * 109.46644 * 329.99975 * 1 2 3 31 31 H 1.08005 * 126.29241 * 359.95890 * 3 2 1 32 32 H 0.97006 * 119.99745 * 359.97438 * 7 5 4 33 33 H 1.08997 * 109.47201 * 300.00329 * 8 7 5 34 34 H 1.09006 * 109.47026 * 59.99773 * 8 7 5 35 35 H 1.08000 * 118.17736 * 0.88696 * 10 9 8 36 36 H 1.08996 * 109.52101 * 108.93651 * 11 10 9 37 37 H 1.09006 * 109.51903 * 229.11737 * 11 10 9 38 38 H 0.97001 * 120.00097 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.77166 * 57.81282 * 21 12 11 40 40 H 1.09001 * 109.78155 * 178.62360 * 21 12 11 41 41 H 1.08998 * 109.31206 * 281.29272 * 22 9 8 42 42 H 1.09004 * 109.31262 * 40.71642 * 22 9 8 43 43 H 1.09008 * 109.47033 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5599 0.6552 0.0006 5 6 4.7639 1.5061 0.0003 6 8 5.8682 0.9970 0.0004 7 7 4.6406 2.8481 -0.0001 8 6 5.8370 3.6937 0.0001 9 6 5.4273 5.1439 -0.0010 10 6 5.3591 5.7507 1.1404 11 6 4.9477 7.1881 1.2963 12 7 4.9057 7.8245 -0.0281 13 6 5.4107 9.0811 -0.2316 14 1 5.7294 9.3816 -1.2188 15 6 5.5131 9.9684 0.8309 16 7 4.8606 9.7337 1.9496 17 14 6.5769 11.4958 0.6731 18 1 6.0775 12.3332 -0.4469 19 1 6.5181 12.2727 1.9373 20 1 7.9812 11.0953 0.4037 21 6 4.2985 7.0545 -1.1277 22 6 5.1330 5.7840 -1.3250 23 6 3.5311 -0.7574 0.0003 24 6 4.7322 -1.6675 0.0013 25 9 5.5032 -1.4235 -1.1402 26 9 5.5011 -1.4238 1.1443 27 7 2.2827 -1.1356 0.0052 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.9166 2.1170 -0.0006 32 1 3.7597 3.2543 -0.0006 33 1 6.4299 3.4840 0.8903 34 1 6.4306 3.4835 -0.8896 35 1 5.6123 5.1934 2.0302 36 1 3.9602 7.2366 1.7552 37 1 5.6693 7.7071 1.9273 38 1 4.9318 10.3540 2.6920 39 1 3.2727 6.7905 -0.8704 40 1 4.3092 7.6469 -2.0427 41 1 6.0708 6.0373 -1.8193 42 1 4.5778 5.0834 -1.9487 43 1 4.4011 -2.7061 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000783162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:16 Heat of formation + Delta-G solvation = -36.496613 kcal Electronic energy + Delta-G solvation = -29228.537339 eV Core-core repulsion = 24753.531515 eV Total energy + Delta-G solvation = -4475.005824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.90033 -47.94735 -42.60201 -40.41745 -39.20968 -36.37499 -34.81198 -34.54731 -32.81227 -31.71357 -31.30521 -29.45156 -28.52609 -26.75023 -25.70347 -24.37585 -23.57993 -22.78738 -21.78989 -21.18249 -19.55309 -19.18604 -18.24368 -18.12487 -17.81633 -17.32592 -17.02603 -16.90077 -16.73672 -16.52845 -15.98959 -15.68981 -15.32308 -15.21044 -14.96158 -14.81801 -14.47736 -14.33930 -14.29657 -13.94045 -13.89850 -13.68690 -13.46932 -13.44655 -13.25293 -12.88021 -12.75587 -12.57165 -12.53258 -12.24464 -12.10149 -12.03053 -11.68693 -11.27338 -11.08740 -10.82314 -10.66255 -10.18070 -9.80287 -9.63239 -8.72745 -7.87145 -5.27757 0.38743 0.61562 1.11100 1.23444 1.47883 1.50909 1.56745 2.33703 2.41617 2.52457 2.63534 3.13744 3.30161 3.35339 3.64952 3.76346 3.83615 3.90912 4.00275 4.01154 4.17333 4.24428 4.43601 4.47607 4.56090 4.57245 4.69646 4.73028 4.78680 4.86246 4.89940 4.95646 5.13526 5.24767 5.39406 5.45361 5.51001 5.63111 5.69736 5.80117 6.15084 6.19182 6.35702 6.62147 7.15493 7.28809 7.85966 8.38909 9.21092 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.019546 B = 0.002338 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.149788 B =11973.010215 C =12724.073641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.342 5.342 3 C 0.129 3.871 4 C -0.293 4.293 5 C 0.583 3.417 6 O -0.573 6.573 7 N -0.706 5.706 8 C 0.171 3.829 9 C -0.137 4.137 10 C -0.141 4.141 11 C 0.206 3.794 12 N -0.616 5.616 13 C -0.257 4.257 14 H 0.069 0.931 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.965 3.035 18 H -0.275 1.275 19 H -0.295 1.295 20 H -0.282 1.282 21 C 0.140 3.860 22 C -0.084 4.084 23 C 0.031 3.969 24 C 0.355 3.645 25 F -0.198 7.198 26 F -0.199 7.199 27 N -0.277 5.277 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.127 0.873 31 H 0.233 0.767 32 H 0.411 0.589 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.249 0.751 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 -22.438 -4.634 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.121 5.121 3 C -0.023 4.023 4 C -0.308 4.308 5 C 0.371 3.629 6 O -0.453 6.453 7 N -0.358 5.358 8 C 0.047 3.953 9 C -0.137 4.137 10 C -0.161 4.161 11 C 0.081 3.919 12 N -0.340 5.340 13 C -0.387 4.387 14 H 0.087 0.913 15 C -0.248 4.248 16 N -0.585 5.585 17 Si 0.794 3.206 18 H -0.200 1.200 19 H -0.221 1.221 20 H -0.209 1.209 21 C 0.015 3.985 22 C -0.123 4.123 23 C -0.137 4.137 24 C 0.300 3.700 25 F -0.180 7.180 26 F -0.181 7.181 27 N -0.100 5.100 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.145 0.855 31 H 0.250 0.750 32 H 0.247 0.753 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.128 0.872 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.098 -23.670 -4.514 26.963 hybrid contribution 0.947 2.046 0.368 2.284 sum -11.151 -21.624 -4.147 24.681 Atomic orbital electron populations 1.22617 0.69623 1.07351 1.06096 1.48788 1.08872 1.02552 1.51840 1.23734 0.88545 0.95690 0.94357 1.20216 0.94016 0.92991 1.23621 1.17523 0.87756 0.82019 0.75627 1.90810 1.28206 1.74410 1.51850 1.45715 1.10387 1.04583 1.75093 1.20193 0.87041 0.86301 1.01730 1.20573 1.03739 0.93949 0.95463 1.22949 0.98087 0.97282 0.97805 1.19395 0.97598 0.87679 0.87245 1.44404 1.69026 1.14507 1.06050 1.19472 1.33894 0.89766 0.95605 0.91293 1.25696 1.01081 1.00657 0.97329 1.70146 1.43990 1.38804 1.05534 0.85368 0.79058 0.79588 0.76611 1.20039 1.22078 1.20860 1.21181 0.94345 0.91935 0.91061 1.20737 1.00481 0.97069 0.94022 1.22918 0.94266 0.94128 1.02411 1.19665 0.79960 0.99109 0.71315 1.93015 1.77238 1.96301 1.51414 1.93015 1.77361 1.96304 1.51371 1.76982 1.00022 1.09517 1.23499 0.88017 0.87945 0.85452 0.75044 0.75265 0.92307 0.91555 0.87151 0.96487 0.92712 0.94143 0.94829 0.92372 0.92107 0.89214 0.81986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.18 11.44 127.77 1.46 1.64 16 2 N -0.34 -4.31 3.98 -367.77 -1.46 -5.77 16 3 C 0.13 1.70 10.99 84.28 0.93 2.62 16 4 C -0.29 -6.65 6.13 -20.15 -0.12 -6.77 16 5 C 0.58 16.44 7.81 86.67 0.68 17.11 16 6 O -0.57 -21.00 14.14 -4.03 -0.06 -21.06 16 7 N -0.71 -16.80 5.54 -470.11 -2.60 -19.40 16 8 C 0.17 4.81 5.66 85.63 0.48 5.29 16 9 C -0.14 -4.26 5.22 -15.14 -0.08 -4.34 16 10 C -0.14 -5.09 9.47 27.11 0.26 -4.83 16 11 C 0.21 9.62 5.23 85.42 0.45 10.07 16 12 N -0.62 -29.88 3.01 -703.05 -2.11 -32.00 16 13 C -0.26 -13.90 9.71 84.03 0.82 -13.08 16 14 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 15 C -0.05 -2.90 5.01 84.86 0.43 -2.48 16 16 N -0.94 -54.38 11.08 21.65 0.24 -54.14 16 17 Si 0.97 44.57 29.58 68.60 2.03 46.60 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 21 C 0.14 5.28 6.59 86.31 0.57 5.85 16 22 C -0.08 -2.60 5.95 29.71 0.18 -2.42 16 23 C 0.03 0.71 6.70 43.51 0.29 1.00 16 24 C 0.35 8.27 5.11 71.23 0.36 8.64 16 25 F -0.20 -5.65 16.28 44.97 0.73 -4.92 16 26 F -0.20 -5.75 16.29 44.97 0.73 -5.01 16 27 N -0.28 -5.37 12.50 -46.68 -0.58 -5.96 16 28 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.13 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.23 0.91 7.46 -2.91 -0.02 0.89 16 32 H 0.41 7.27 7.39 -92.70 -0.68 6.59 16 33 H 0.06 1.79 7.78 -2.39 -0.02 1.77 16 34 H 0.07 1.94 8.11 -2.38 -0.02 1.92 16 35 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 36 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.05 2.95 6.41 -2.38 -0.02 2.93 16 38 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.06 2.15 7.96 -2.39 -0.02 2.13 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.16 2.30 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -79.07 368.88 3.98 -75.09 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.37 Total: 8.28 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.69 Total: 18.29 kcal Atomic # 7 Polarization: -110.74 SS G_CDS: -6.52 Total: -117.27 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.06 Total: -21.06 kcal Atomic # 9 Polarization: -11.40 SS G_CDS: 1.46 Total: -9.94 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -79.07 3.98 -75.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000783162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.592 kcal (2) G-P(sol) polarization free energy of solvation -79.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds