Wall clock time and date at job start Sat Apr 11 2020 06:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28471 * 124.88208 * 2 1 4 4 C 1.31811 * 110.07436 * 179.97438 * 3 2 1 5 5 C 1.47705 * 126.52004 * 179.97438 * 4 3 2 6 6 O 1.21571 * 119.99919 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00224 * 0.02846 * 5 4 3 8 8 C 1.46494 * 120.00373 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47356 * 179.97438 * 8 7 5 10 10 C 1.29452 * 117.69502 * 95.00329 * 9 8 7 11 11 C 1.50324 * 123.65304 * 180.57901 * 10 9 8 12 12 N 1.47010 * 109.16448 * 349.27777 * 11 10 9 13 13 C 1.36936 * 121.37191 * 222.96712 * 12 11 10 14 14 H 1.08000 * 119.99620 * 155.97016 * 13 12 11 15 15 C 1.38810 * 120.00410 * 335.97307 * 13 12 11 16 16 N 1.31617 * 119.99875 * 344.52041 * 15 13 12 17 17 Si 1.86807 * 119.99988 * 164.51574 * 15 13 12 18 18 H 1.48498 * 109.46876 * 90.00079 * 17 15 13 19 19 H 1.48495 * 109.46847 * 210.00217 * 17 15 13 20 20 H 1.48494 * 109.47077 * 330.00263 * 17 15 13 21 21 C 1.47340 * 117.24864 * 42.94958 * 12 11 10 22 22 C 1.49964 * 117.69115 * 275.22114 * 9 8 7 23 23 C 1.41505 * 106.95908 * 0.26118 * 4 3 2 24 24 C 1.35026 * 124.88874 * 179.97438 * 2 1 3 25 25 C 1.50706 * 126.38360 * 0.02562 * 24 2 1 26 26 F 1.39903 * 109.46760 * 299.99604 * 25 24 2 27 27 F 1.39897 * 109.47413 * 59.99918 * 25 24 2 28 28 H 1.09006 * 109.46883 * 89.97719 * 1 2 3 29 29 H 1.08994 * 109.47436 * 209.97686 * 1 2 3 30 30 H 1.08993 * 109.47287 * 329.98082 * 1 2 3 31 31 H 0.97004 * 119.99988 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.46926 * 59.99860 * 8 7 5 33 33 H 1.09000 * 109.47149 * 299.99916 * 8 7 5 34 34 H 1.08003 * 118.17223 * 0.85562 * 10 9 8 35 35 H 1.08995 * 109.52197 * 109.18684 * 11 10 9 36 36 H 1.08999 * 109.51994 * 229.37111 * 11 10 9 37 37 H 0.97002 * 119.99820 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.77806 * 57.81155 * 21 12 11 39 39 H 1.09002 * 109.77678 * 178.61833 * 21 12 11 40 40 H 1.09003 * 109.43742 * 40.82300 * 22 9 8 41 41 H 1.09001 * 109.13695 * 281.43060 * 22 9 8 42 42 H 1.08004 * 127.24274 * 179.74236 * 23 4 3 43 43 H 1.09000 * 109.46963 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4740 0.7170 0.0006 5 6 4.6272 1.6400 0.0002 6 8 5.7596 1.1978 0.0003 7 7 4.4240 2.9723 -0.0002 8 6 5.5677 3.8877 0.0000 9 6 5.0721 5.3109 -0.0011 10 6 4.9679 5.9126 1.1403 11 6 4.4771 7.3249 1.2957 12 7 4.3971 7.9566 -0.0293 13 6 4.8306 9.2392 -0.2350 14 1 5.1300 9.5560 -1.2231 15 6 4.8854 10.1320 0.8265 16 7 4.2492 9.8623 1.9467 17 14 5.8621 11.7162 0.6650 18 1 4.9826 12.7878 0.1327 19 1 6.3792 12.1168 1.9981 20 1 7.0007 11.5032 -0.2641 21 6 3.8316 7.1526 -1.1269 22 6 4.7297 5.9285 -1.3241 23 6 3.5271 -0.6970 -0.0052 24 6 2.2373 -1.1076 0.0005 25 6 1.7534 -2.5348 0.0006 26 9 0.9788 -2.7645 1.1427 27 9 0.9795 -2.7650 -1.1419 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8897 0.5141 31 1 3.5204 3.3251 -0.0006 32 1 6.1728 3.7133 -0.8897 33 1 6.1721 3.7138 0.8903 34 1 5.2536 5.3712 2.0301 35 1 3.4893 7.3186 1.7565 36 1 5.1698 7.8841 1.9246 37 1 4.2872 10.4864 2.6883 38 1 2.8226 6.8320 -0.8673 39 1 3.8073 7.7437 -2.0424 40 1 4.2106 5.1964 -1.9427 41 1 5.6488 6.2326 -1.8250 42 1 4.4109 -1.3179 -0.0103 43 1 2.6100 -3.2089 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000947829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:19 Heat of formation + Delta-G solvation = -14.431940 kcal Electronic energy + Delta-G solvation = -28661.078849 eV Core-core repulsion = 24187.029821 eV Total energy + Delta-G solvation = -4474.049028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.66524 -47.64639 -43.13927 -39.47222 -37.72483 -34.96669 -33.97479 -32.95845 -32.38628 -30.88134 -29.73964 -28.26786 -27.03690 -26.32187 -24.46287 -23.09890 -22.64889 -21.69467 -21.07432 -20.12875 -18.66540 -17.98101 -17.84803 -17.63842 -16.89688 -16.63619 -16.26519 -15.64550 -15.52092 -15.21579 -14.86754 -14.54100 -14.36758 -14.17424 -14.00513 -13.81417 -13.66942 -13.42302 -13.38111 -13.27159 -12.98504 -12.86708 -12.26250 -12.21690 -12.03471 -11.56608 -11.36394 -11.26467 -10.92324 -10.73063 -10.45093 -10.33802 -10.21162 -9.86762 -9.83486 -9.60486 -9.55440 -8.96321 -8.69032 -8.06702 -6.75413 -5.80801 -3.19379 1.12488 1.49261 1.87409 2.55492 2.90386 3.26898 3.37474 3.44486 3.44553 3.47021 3.53802 3.79188 4.07978 4.32428 4.48760 4.56745 4.61503 4.88187 4.90733 5.00892 5.15577 5.21787 5.35172 5.39602 5.57484 5.81142 5.84081 5.94695 6.06889 6.10441 6.17393 6.34404 6.43138 6.52091 6.73058 6.86950 7.16289 7.24669 7.27563 7.34248 7.62833 7.72326 7.81664 8.16992 8.37066 9.18502 9.81324 10.39411 11.29767 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.001979 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.642847 B =14146.540741 C =14551.041599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.257 5.257 3 N -0.233 5.233 4 C -0.014 4.014 5 C 0.600 3.400 6 O -0.537 6.537 7 N -0.704 5.704 8 C 0.157 3.843 9 C -0.166 4.166 10 C -0.123 4.123 11 C 0.194 3.806 12 N -0.595 5.595 13 C -0.245 4.245 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.144 3.856 22 C -0.090 4.090 23 C -0.130 4.130 24 C -0.080 4.080 25 C 0.349 3.651 26 F -0.195 7.195 27 F -0.195 7.195 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.408 0.592 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.094 0.906 37 H 0.254 0.746 38 H 0.023 0.977 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.173 0.827 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.352 -25.873 -3.436 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.046 5.046 3 N -0.071 5.071 4 C -0.172 4.172 5 C 0.384 3.616 6 O -0.412 6.412 7 N -0.355 5.355 8 C 0.035 3.965 9 C -0.167 4.167 10 C -0.144 4.144 11 C 0.069 3.931 12 N -0.318 5.318 13 C -0.375 4.375 14 H 0.086 0.914 15 C -0.200 4.200 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.017 3.983 22 C -0.129 4.129 23 C -0.158 4.158 24 C -0.205 4.205 25 C 0.293 3.707 26 F -0.176 7.176 27 F -0.176 7.176 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.244 0.756 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.041 0.959 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.190 0.810 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.401 -25.121 -3.297 26.395 hybrid contribution 0.315 0.267 0.077 0.420 sum -7.087 -24.854 -3.220 26.044 Atomic orbital electron populations 1.22400 0.72370 1.06216 1.05247 1.45331 1.08086 1.01988 1.49227 1.73656 1.03147 1.13174 1.17108 1.22030 0.90897 0.93871 1.10433 1.16805 0.86240 0.81684 0.76870 1.90798 1.22314 1.77187 1.50913 1.46062 1.11388 1.04850 1.73193 1.20533 0.87295 0.86567 1.02131 1.20470 1.06297 0.93675 0.96279 1.23297 0.95417 0.99529 0.96108 1.19763 0.99140 0.86003 0.88200 1.44127 1.71463 1.11553 1.04701 1.19169 1.36307 0.86482 0.95502 0.91376 1.24990 0.99788 0.97801 0.97383 1.70007 1.43375 1.37157 1.04992 0.86257 0.80034 0.83346 0.76931 1.21449 1.21564 1.20524 1.20952 0.93614 0.91192 0.92500 1.20755 1.00584 0.97973 0.93616 1.21565 0.95739 0.94107 1.04428 1.21753 0.92485 0.90515 1.15707 1.19842 0.88269 0.91117 0.71432 1.93041 1.78046 1.95383 1.51151 1.93051 1.78077 1.95403 1.51043 0.88896 0.88353 0.87574 0.75649 0.91242 0.91312 0.88724 0.94100 0.88843 0.93605 0.95918 0.92442 0.92829 0.91719 0.80978 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.04 59.85 0.66 1.10 16 2 N -0.26 -2.42 3.70 -63.86 -0.24 -2.66 16 3 N -0.23 -2.77 11.67 33.42 0.39 -2.38 16 4 C -0.01 -0.17 7.13 -82.76 -0.59 -0.76 16 5 C 0.60 8.80 7.82 -12.39 -0.10 8.71 16 6 O -0.54 -9.19 16.93 5.30 0.09 -9.10 16 7 N -0.70 -9.96 5.54 -62.48 -0.35 -10.31 16 8 C 0.16 2.38 5.66 -5.20 -0.03 2.35 16 9 C -0.17 -2.87 5.23 -100.99 -0.53 -3.40 16 10 C -0.12 -2.33 9.47 -35.78 -0.34 -2.67 16 11 C 0.19 4.56 5.23 -5.10 -0.03 4.54 16 12 N -0.60 -14.79 3.01 -173.67 -0.52 -15.31 16 13 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 15 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 16 N -0.91 -26.09 11.08 55.49 0.61 -25.47 16 17 Si 0.90 21.65 29.58 -169.99 -5.03 16.62 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 21 C 0.14 2.96 6.58 -3.53 -0.02 2.94 16 22 C -0.09 -1.57 5.94 -28.18 -0.17 -1.74 16 23 C -0.13 -1.29 10.71 -39.36 -0.42 -1.71 16 24 C -0.08 -0.68 6.35 -82.21 -0.52 -1.20 16 25 C 0.35 1.96 5.27 36.01 0.19 2.15 16 26 F -0.20 -1.33 16.30 2.25 0.04 -1.29 16 27 F -0.19 -1.33 17.25 2.25 0.04 -1.29 16 28 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.10 0.43 6.83 -51.93 -0.35 0.08 16 30 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.41 5.51 8.19 -40.82 -0.33 5.18 16 32 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 33 H 0.07 1.06 7.78 -51.93 -0.40 0.65 16 34 H 0.09 1.62 7.73 -52.48 -0.41 1.21 16 35 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 2.45 6.41 -51.93 -0.33 2.12 16 37 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 43 H 0.14 0.29 8.11 -51.93 -0.42 -0.13 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -33.06 371.76 -7.08 -40.14 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.60 Total: 2.13 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -2.13 Total: 3.32 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.10 Total: -56.13 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.08 Total: -2.58 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.06 -7.08 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000947829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.712 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds