Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28471 * 124.88208 * 2 1 4 4 C 1.31811 * 110.07436 * 179.97438 * 3 2 1 5 5 C 1.47705 * 126.52004 * 179.97438 * 4 3 2 6 6 O 1.21571 * 119.99919 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00224 * 0.02846 * 5 4 3 8 8 C 1.46494 * 120.00373 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47356 * 179.97438 * 8 7 5 10 10 C 1.29452 * 117.69502 * 95.00329 * 9 8 7 11 11 C 1.50324 * 123.65304 * 180.57901 * 10 9 8 12 12 N 1.47010 * 109.16448 * 349.27777 * 11 10 9 13 13 C 1.36936 * 121.37191 * 222.96712 * 12 11 10 14 14 H 1.08000 * 119.99620 * 155.97016 * 13 12 11 15 15 C 1.38810 * 120.00410 * 335.97307 * 13 12 11 16 16 N 1.31617 * 119.99875 * 344.52041 * 15 13 12 17 17 Si 1.86807 * 119.99988 * 164.51574 * 15 13 12 18 18 H 1.48498 * 109.46876 * 90.00079 * 17 15 13 19 19 H 1.48495 * 109.46847 * 210.00217 * 17 15 13 20 20 H 1.48494 * 109.47077 * 330.00263 * 17 15 13 21 21 C 1.47340 * 117.24864 * 42.94958 * 12 11 10 22 22 C 1.49964 * 117.69115 * 275.22114 * 9 8 7 23 23 C 1.41505 * 106.95908 * 0.26118 * 4 3 2 24 24 C 1.35026 * 124.88874 * 179.97438 * 2 1 3 25 25 C 1.50706 * 126.38360 * 0.02562 * 24 2 1 26 26 F 1.39903 * 109.46760 * 299.99604 * 25 24 2 27 27 F 1.39897 * 109.47413 * 59.99918 * 25 24 2 28 28 H 1.09006 * 109.46883 * 89.97719 * 1 2 3 29 29 H 1.08994 * 109.47436 * 209.97686 * 1 2 3 30 30 H 1.08993 * 109.47287 * 329.98082 * 1 2 3 31 31 H 0.97004 * 119.99988 * 359.97438 * 7 5 4 32 32 H 1.08999 * 109.46926 * 59.99860 * 8 7 5 33 33 H 1.09000 * 109.47149 * 299.99916 * 8 7 5 34 34 H 1.08003 * 118.17223 * 0.85562 * 10 9 8 35 35 H 1.08995 * 109.52197 * 109.18684 * 11 10 9 36 36 H 1.08999 * 109.51994 * 229.37111 * 11 10 9 37 37 H 0.97002 * 119.99820 * 180.02562 * 16 15 13 38 38 H 1.09002 * 109.77806 * 57.81155 * 21 12 11 39 39 H 1.09002 * 109.77678 * 178.61833 * 21 12 11 40 40 H 1.09003 * 109.43742 * 40.82300 * 22 9 8 41 41 H 1.09001 * 109.13695 * 281.43060 * 22 9 8 42 42 H 1.08004 * 127.24274 * 179.74236 * 23 4 3 43 43 H 1.09000 * 109.46963 * 180.02562 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1997 1.0539 0.0000 4 6 3.4740 0.7170 0.0006 5 6 4.6272 1.6400 0.0002 6 8 5.7596 1.1978 0.0003 7 7 4.4240 2.9723 -0.0002 8 6 5.5677 3.8877 0.0000 9 6 5.0721 5.3109 -0.0011 10 6 4.9679 5.9126 1.1403 11 6 4.4771 7.3249 1.2957 12 7 4.3971 7.9566 -0.0293 13 6 4.8306 9.2392 -0.2350 14 1 5.1300 9.5560 -1.2231 15 6 4.8854 10.1320 0.8265 16 7 4.2492 9.8623 1.9467 17 14 5.8621 11.7162 0.6650 18 1 4.9826 12.7878 0.1327 19 1 6.3792 12.1168 1.9981 20 1 7.0007 11.5032 -0.2641 21 6 3.8316 7.1526 -1.1269 22 6 4.7297 5.9285 -1.3241 23 6 3.5271 -0.6970 -0.0052 24 6 2.2373 -1.1076 0.0005 25 6 1.7534 -2.5348 0.0006 26 9 0.9788 -2.7645 1.1427 27 9 0.9795 -2.7650 -1.1419 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8901 0.5134 30 1 -0.3633 0.8897 0.5141 31 1 3.5204 3.3251 -0.0006 32 1 6.1728 3.7133 -0.8897 33 1 6.1721 3.7138 0.8903 34 1 5.2536 5.3712 2.0301 35 1 3.4893 7.3186 1.7565 36 1 5.1698 7.8841 1.9246 37 1 4.2872 10.4864 2.6883 38 1 2.8226 6.8320 -0.8673 39 1 3.8073 7.7437 -2.0424 40 1 4.2106 5.1964 -1.9427 41 1 5.6488 6.2326 -1.8250 42 1 4.4109 -1.3179 -0.0103 43 1 2.6100 -3.2089 0.0015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000947829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = -35.946315 kcal Electronic energy + Delta-G solvation = -28662.011782 eV Core-core repulsion = 24187.029821 eV Total energy + Delta-G solvation = -4474.981961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.13147 -48.11770 -43.88645 -40.66323 -39.30375 -36.45370 -34.79229 -34.43624 -33.19204 -32.55445 -31.44165 -29.25905 -28.20545 -27.08414 -25.97338 -24.50763 -23.98058 -22.75943 -22.43060 -21.07144 -19.58924 -19.31938 -18.47733 -18.28897 -17.86634 -17.41234 -17.33335 -17.15568 -16.87767 -16.41917 -16.17910 -15.74171 -15.39835 -15.24372 -15.05266 -14.94034 -14.87097 -14.48911 -14.47778 -13.97441 -13.86030 -13.80458 -13.56097 -13.51795 -13.27787 -12.93655 -12.81834 -12.75359 -12.58449 -12.24902 -12.12208 -11.96963 -11.71829 -11.47615 -11.24461 -10.68976 -10.63044 -10.35890 -10.07974 -9.67580 -8.75763 -7.88807 -5.30035 0.32323 0.68927 1.11545 1.30453 1.46736 1.48574 1.58000 2.20537 2.23678 2.51075 2.53636 3.06300 3.13288 3.28494 3.58061 3.61204 3.82661 3.88657 3.94784 3.96613 4.21179 4.25486 4.28569 4.43309 4.49756 4.52158 4.52898 4.64343 4.73359 4.83103 4.90574 5.08351 5.10267 5.20122 5.28363 5.39022 5.46093 5.47115 5.61068 5.75399 6.15267 6.33304 6.34008 6.66113 7.05882 7.12943 7.82743 8.36929 9.19976 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.026001 B = 0.001979 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.642847 B =14146.540741 C =14551.041599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.257 5.257 3 N -0.251 5.251 4 C -0.042 4.042 5 C 0.603 3.397 6 O -0.565 6.565 7 N -0.701 5.701 8 C 0.167 3.833 9 C -0.140 4.140 10 C -0.141 4.141 11 C 0.205 3.795 12 N -0.615 5.615 13 C -0.256 4.256 14 H 0.071 0.929 15 C -0.055 4.055 16 N -0.940 5.940 17 Si 0.969 3.031 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.272 1.272 21 C 0.139 3.861 22 C -0.084 4.084 23 C -0.136 4.136 24 C -0.074 4.074 25 C 0.352 3.648 26 F -0.201 7.201 27 F -0.200 7.200 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.412 0.588 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.013 0.987 36 H 0.058 0.942 37 H 0.250 0.750 38 H 0.025 0.975 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.190 0.810 43 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.485 -28.074 -4.645 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.046 5.046 3 N -0.090 5.090 4 C -0.199 4.199 5 C 0.388 3.612 6 O -0.443 6.443 7 N -0.351 5.351 8 C 0.044 3.956 9 C -0.141 4.141 10 C -0.161 4.161 11 C 0.080 3.920 12 N -0.339 5.339 13 C -0.386 4.386 14 H 0.089 0.911 15 C -0.250 4.250 16 N -0.587 5.587 17 Si 0.797 3.203 18 H -0.211 1.211 19 H -0.220 1.220 20 H -0.196 1.196 21 C 0.014 3.986 22 C -0.123 4.123 23 C -0.164 4.164 24 C -0.200 4.200 25 C 0.297 3.703 26 F -0.182 7.182 27 F -0.181 7.181 28 H 0.125 0.875 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.248 0.752 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.131 0.869 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.208 0.792 43 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.559 -27.339 -4.533 28.725 hybrid contribution 0.228 0.882 0.382 0.988 sum -7.331 -26.457 -4.151 27.766 Atomic orbital electron populations 1.22719 0.70497 1.07293 1.06536 1.45738 1.09227 1.01856 1.47802 1.73589 1.03123 1.14451 1.17816 1.21842 0.90650 0.94659 1.12778 1.17019 0.86518 0.81717 0.75917 1.90774 1.23593 1.77622 1.52338 1.45932 1.11166 1.04807 1.73210 1.20350 0.87582 0.85116 1.02560 1.20597 1.03506 0.94489 0.95499 1.22974 0.97980 0.97351 0.97843 1.19404 0.97105 0.88203 0.87287 1.44410 1.71995 1.11510 1.05979 1.19509 1.35861 0.87647 0.95628 0.91147 1.25755 1.00987 1.00986 0.97272 1.70169 1.44805 1.38126 1.05572 0.85253 0.78755 0.79701 0.76616 1.21100 1.21957 1.19648 1.21133 0.94245 0.91977 0.91291 1.20690 1.00251 0.97212 0.94121 1.21831 0.97087 0.93164 1.04290 1.22226 0.92029 0.91659 1.14068 1.20247 0.89193 0.90010 0.70814 1.93031 1.78388 1.95243 1.51559 1.93042 1.78412 1.95261 1.51432 0.87473 0.86930 0.86933 0.75187 0.90548 0.91274 0.86886 0.96929 0.92331 0.94115 0.95699 0.92127 0.89668 0.91538 0.79243 0.79795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.63 11.04 127.77 1.41 2.04 16 2 N -0.26 -4.36 3.70 -355.94 -1.32 -5.68 16 3 N -0.25 -5.64 11.67 -48.18 -0.56 -6.20 16 4 C -0.04 -1.02 7.13 42.46 0.30 -0.71 16 5 C 0.60 17.05 7.82 86.75 0.68 17.73 16 6 O -0.57 -18.83 16.93 -3.94 -0.07 -18.90 16 7 N -0.70 -18.85 5.54 -469.86 -2.61 -21.45 16 8 C 0.17 4.76 5.66 85.63 0.48 5.25 16 9 C -0.14 -4.64 5.23 -15.14 -0.08 -4.72 16 10 C -0.14 -5.36 9.47 27.11 0.26 -5.10 16 11 C 0.21 10.00 5.23 85.42 0.45 10.45 16 12 N -0.61 -31.02 3.01 -703.37 -2.12 -33.13 16 13 C -0.26 -14.16 9.71 84.03 0.82 -13.34 16 14 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 15 C -0.06 -3.10 5.01 84.86 0.43 -2.68 16 16 N -0.94 -55.69 11.08 21.65 0.24 -55.45 16 17 Si 0.97 45.16 29.58 68.60 2.03 47.19 16 18 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.14 5.62 6.58 86.25 0.57 6.19 16 22 C -0.08 -2.77 5.94 29.65 0.18 -2.59 16 23 C -0.14 -2.44 10.71 22.41 0.24 -2.20 16 24 C -0.07 -1.10 6.35 41.40 0.26 -0.83 16 25 C 0.35 2.88 5.27 71.24 0.38 3.26 16 26 F -0.20 -2.20 16.30 44.97 0.73 -1.46 16 27 F -0.20 -2.18 17.25 44.97 0.78 -1.40 16 28 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.11 0.73 6.83 -2.39 -0.02 0.71 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.41 10.57 8.19 -92.71 -0.76 9.81 16 32 H 0.08 2.14 8.11 -2.39 -0.02 2.12 16 33 H 0.07 2.02 7.78 -2.39 -0.02 2.00 16 34 H 0.11 3.84 7.73 -2.91 -0.02 3.82 16 35 H 0.01 0.68 8.14 -2.39 -0.02 0.67 16 36 H 0.06 3.23 6.41 -2.39 -0.02 3.21 16 37 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 40 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 43 H 0.19 0.00 8.11 -2.39 -0.02 -0.02 16 Total: -1.00 -72.73 371.76 3.77 -68.96 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.30 Total: 14.80 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.36 Total: 12.73 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -6.36 Total: -121.91 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.07 Total: -18.90 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 1.51 Total: -2.87 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.73 3.77 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000947829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.012 kcal (2) G-P(sol) polarization free energy of solvation -72.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds