Wall clock time and date at job start Sat Apr 11 2020 06:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 120.00178 * 2 1 4 4 O 1.21479 * 120.00135 * 174.36675 * 3 2 1 5 5 C 1.48458 * 120.00137 * 354.64747 * 3 2 1 6 6 C 1.39532 * 120.54951 * 173.02933 * 5 3 2 7 7 C 1.38767 * 118.26014 * 179.97438 * 6 5 3 8 8 C 1.50704 * 120.42305 * 180.02562 * 7 6 5 9 9 F 1.39901 * 109.46880 * 299.99393 * 8 7 6 10 10 F 1.39891 * 109.47321 * 59.99367 * 8 7 6 11 11 N 1.32199 * 119.14858 * 359.97438 * 7 6 5 12 12 C 1.31885 * 121.03676 * 0.02562 * 11 7 6 13 13 N 1.31578 * 121.91715 * 359.72473 * 12 11 7 14 14 C 1.46500 * 119.99568 * 179.97438 * 2 1 3 15 15 C 1.53034 * 109.45970 * 60.02961 * 14 2 1 16 16 C 1.53198 * 109.31045 * 178.59995 * 15 14 2 17 17 N 1.46919 * 108.76698 * 54.65402 * 16 15 14 18 18 C 1.36943 * 120.62965 * 126.40497 * 17 16 15 19 19 H 1.07998 * 119.99701 * 327.91264 * 18 17 16 20 20 C 1.38807 * 120.00004 * 147.91441 * 18 17 16 21 21 N 1.31622 * 119.99939 * 346.70817 * 20 18 17 22 22 Si 1.86800 * 120.00084 * 166.70902 * 20 18 17 23 23 H 1.48499 * 109.47087 * 60.00158 * 22 20 18 24 24 H 1.48505 * 109.47146 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47230 * 300.00133 * 22 20 18 26 26 C 1.46929 * 118.74097 * 306.38606 * 17 16 15 27 27 C 1.53043 * 109.46074 * 299.97098 * 14 2 1 28 28 H 1.09004 * 109.47049 * 85.36615 * 1 2 3 29 29 H 1.08994 * 109.47676 * 205.36813 * 1 2 3 30 30 H 1.08998 * 109.46942 * 325.37125 * 1 2 3 31 31 H 1.07995 * 120.87059 * 359.94878 * 6 5 3 32 32 H 1.09002 * 109.46764 * 179.97438 * 8 7 6 33 33 H 1.08000 * 119.04196 * 180.02562 * 12 11 7 34 34 H 1.08998 * 109.45840 * 180.02562 * 14 2 1 35 35 H 1.08994 * 109.50212 * 298.56080 * 15 14 2 36 36 H 1.08996 * 109.50003 * 58.66509 * 15 14 2 37 37 H 1.09002 * 109.59514 * 294.86634 * 16 15 14 38 38 H 1.09000 * 109.70324 * 174.51084 * 16 15 14 39 39 H 0.97004 * 119.99797 * 180.02562 * 21 20 18 40 40 H 1.08994 * 109.58109 * 293.82029 * 26 17 16 41 41 H 1.09003 * 109.70134 * 173.46130 * 26 17 16 42 42 H 1.08991 * 109.50103 * 301.33855 * 27 14 2 43 43 H 1.09002 * 109.49449 * 61.40575 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3493 1.1697 0.1033 5 6 1.4016 2.4501 -0.1199 6 6 2.0683 3.6674 0.0236 7 6 1.3327 4.8377 -0.0982 8 6 2.0035 6.1793 0.0473 9 9 2.5774 6.2782 1.3194 10 9 3.0004 6.3103 -0.9254 11 7 0.0362 4.7607 -0.3446 12 6 -0.5631 3.5930 -0.4746 13 7 0.0949 2.4582 -0.3719 14 6 2.1974 -1.2688 0.0006 15 6 1.8280 -2.0712 -1.2491 16 6 2.6219 -3.3814 -1.2628 17 7 2.3848 -4.0910 0.0017 18 6 1.9517 -5.3902 0.0021 19 1 1.3098 -5.7456 -0.7904 20 6 2.3377 -6.2501 1.0210 21 7 3.3146 -5.9096 1.8348 22 14 1.4708 -7.8905 1.2374 23 1 1.6308 -8.7015 0.0037 24 1 2.0662 -8.6172 2.3875 25 1 0.0266 -7.6573 1.4926 26 6 2.6216 -3.3805 1.2657 27 6 1.8280 -2.0702 1.2510 28 1 -0.3633 0.0830 -1.0243 29 1 -0.3634 -0.9285 0.4402 30 1 -0.3633 0.8456 0.5840 31 1 3.1289 3.6979 0.2247 32 1 1.2649 6.9706 -0.0809 33 1 -1.6238 3.5676 -0.6761 34 1 3.2690 -1.0695 0.0009 35 1 0.7609 -2.2925 -1.2371 36 1 2.0698 -1.4904 -2.1391 37 1 3.6850 -3.1637 -1.3658 38 1 2.2935 -4.0014 -2.0970 39 1 3.5846 -6.5108 2.5466 40 1 3.6846 -3.1627 1.3688 41 1 2.2922 -3.9978 2.1015 42 1 2.0697 -1.4886 2.1405 43 1 0.7606 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005579684.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:28 Heat of formation + Delta-G solvation = -59.859494 kcal Electronic energy + Delta-G solvation = -29560.256222 eV Core-core repulsion = 25084.237307 eV Total energy + Delta-G solvation = -4476.018915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.20902 -48.20848 -42.64264 -41.01553 -39.07727 -36.82321 -35.62502 -34.19125 -33.67677 -31.93775 -31.40498 -28.95570 -27.96060 -27.46103 -26.06850 -24.79620 -23.91024 -23.59944 -21.51288 -20.52396 -19.65118 -19.07688 -18.69179 -18.46546 -18.12557 -17.57029 -17.03774 -16.88418 -16.76621 -16.69698 -16.16591 -15.71240 -15.61603 -15.40051 -15.06026 -14.94064 -14.73103 -14.56323 -14.39520 -14.18082 -14.11354 -13.89425 -13.31612 -13.20908 -12.99717 -12.62742 -12.61390 -12.56599 -12.28623 -12.12064 -12.07778 -12.02731 -11.92670 -11.62753 -11.50392 -11.35907 -11.13140 -10.57704 -10.44354 -9.72980 -8.66684 -7.88212 -5.39502 -0.92561 -0.57125 1.41729 1.48669 1.50131 1.57251 1.58153 1.94420 2.40734 2.51201 2.61279 2.88825 3.05202 3.26944 3.28930 3.51150 3.63759 3.73953 3.78951 3.83590 3.99536 4.03875 4.24217 4.29649 4.31116 4.43735 4.62453 4.69813 4.76102 4.82109 4.88924 4.99213 5.02981 5.10061 5.14677 5.28070 5.33334 5.42674 5.50197 5.63735 5.66893 6.17398 6.40105 6.54392 6.80362 7.13943 7.82042 8.37199 9.18795 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.028337 B = 0.002270 C = 0.002214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.884604 B =12330.728925 C =12641.073574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.579 5.579 3 C 0.555 3.445 4 O -0.564 6.564 5 C 0.136 3.864 6 C -0.147 4.147 7 C 0.103 3.897 8 C 0.329 3.671 9 F -0.196 7.196 10 F -0.196 7.196 11 N -0.477 5.477 12 C 0.301 3.699 13 N -0.473 5.473 14 C 0.151 3.849 15 C -0.119 4.119 16 C 0.144 3.856 17 N -0.608 5.608 18 C -0.265 4.265 19 H 0.070 0.930 20 C -0.049 4.049 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.274 1.274 26 C 0.185 3.815 27 C -0.128 4.128 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.256 0.744 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.008 0.992 38 H 0.065 0.935 39 H 0.250 0.750 40 H -0.009 1.009 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.376 25.442 -4.959 28.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.308 5.308 3 C 0.341 3.659 4 O -0.442 6.442 5 C -0.012 4.012 6 C -0.170 4.170 7 C -0.047 4.047 8 C 0.275 3.725 9 F -0.178 7.178 10 F -0.178 7.178 11 N -0.191 5.191 12 C 0.015 3.985 13 N -0.189 5.189 14 C 0.049 3.951 15 C -0.159 4.159 16 C 0.018 3.982 17 N -0.331 5.331 18 C -0.395 4.395 19 H 0.088 0.912 20 C -0.244 4.244 21 N -0.583 5.583 22 Si 0.798 3.202 23 H -0.200 1.200 24 H -0.223 1.223 25 H -0.200 1.200 26 C 0.058 3.942 27 C -0.168 4.168 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.175 0.825 32 H 0.197 0.803 33 H 0.272 0.728 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.614 25.259 -4.973 28.243 hybrid contribution 1.328 -1.265 0.629 1.939 sum -10.286 23.994 -4.344 26.465 Atomic orbital electron populations 1.22274 0.76154 1.03431 1.03766 1.48038 1.09275 1.04517 1.68957 1.18197 0.86306 0.83684 0.77693 1.90796 1.14723 1.86974 1.51745 1.21373 0.91014 0.93409 0.95399 1.22763 1.03896 0.92508 0.97805 1.22334 0.91474 0.95632 0.95287 1.20495 0.85557 0.94917 0.71553 1.93056 1.86758 1.96902 1.41039 1.93053 1.64861 1.96596 1.63248 1.68072 1.08848 1.31582 1.10582 1.26121 1.02702 0.80481 0.89218 1.68924 1.06640 1.32390 1.10982 1.20981 0.96234 0.81648 0.96272 1.22155 1.01515 0.96051 0.96195 1.21007 0.95779 0.92355 0.89077 1.44279 1.78017 1.10178 1.00657 1.19472 1.22892 0.87040 1.10086 0.91232 1.25973 0.97239 1.01177 1.00034 1.70167 1.29147 1.38333 1.20653 0.85302 0.78290 0.79523 0.77059 1.20042 1.22304 1.19968 1.20453 0.94157 0.90079 0.89471 1.22307 1.01409 0.96724 0.96350 0.90590 0.91239 0.88382 0.82517 0.80280 0.72830 0.91116 0.90641 0.90979 0.97401 0.91643 0.94063 0.99060 0.92476 0.92471 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.79 8.21 127.77 1.05 2.84 16 2 N -0.58 -16.56 2.76 -825.17 -2.28 -18.84 16 3 C 0.56 16.75 7.67 86.97 0.67 17.42 16 4 O -0.56 -21.15 15.79 -3.65 -0.06 -21.21 16 5 C 0.14 3.13 6.57 41.99 0.28 3.40 16 6 C -0.15 -3.08 9.32 22.71 0.21 -2.87 16 7 C 0.10 1.63 6.31 42.63 0.27 1.90 16 8 C 0.33 3.99 5.58 71.24 0.40 4.39 16 9 F -0.20 -3.14 17.27 44.97 0.78 -2.36 16 10 F -0.20 -3.14 17.27 44.97 0.78 -2.36 16 11 N -0.48 -6.35 10.35 -188.12 -1.95 -8.30 16 12 C 0.30 3.43 12.27 180.92 2.22 5.65 16 13 N -0.47 -8.09 6.41 -189.15 -1.21 -9.30 16 14 C 0.15 5.26 2.47 45.02 0.11 5.37 16 15 C -0.12 -3.96 5.34 30.67 0.16 -3.79 16 16 C 0.14 5.97 6.52 86.37 0.56 6.53 16 17 N -0.61 -30.38 2.98 -699.10 -2.08 -32.46 16 18 C -0.26 -14.33 9.56 84.03 0.80 -13.52 16 19 H 0.07 3.61 7.86 -2.91 -0.02 3.59 16 20 C -0.05 -2.70 4.98 84.86 0.42 -2.27 16 21 N -0.94 -55.76 11.27 21.65 0.24 -55.51 16 22 Si 0.97 44.24 29.57 68.60 2.03 46.27 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.18 9.03 5.25 86.36 0.45 9.49 16 27 C -0.13 -4.85 5.32 30.67 0.16 -4.68 16 28 H 0.08 1.40 8.04 -2.39 -0.02 1.38 16 29 H 0.07 1.51 6.46 -2.39 -0.02 1.49 16 30 H 0.10 1.80 5.76 -2.39 -0.01 1.79 16 31 H 0.16 3.52 7.75 -2.91 -0.02 3.50 16 32 H 0.18 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.26 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.07 2.87 6.91 -2.39 -0.02 2.85 16 35 H 0.07 2.36 7.72 -2.39 -0.02 2.34 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 40 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 41 H 0.06 3.12 6.26 -2.39 -0.01 3.10 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.07 2.56 6.72 -2.39 -0.02 2.54 16 Total: -1.00 -70.87 358.81 5.07 -65.80 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.05 Total: 8.42 kcal Atomic # 6 Polarization: 22.08 SS G_CDS: 7.77 Total: 29.85 kcal Atomic # 7 Polarization: -117.13 SS G_CDS: -7.27 Total: -124.40 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 1.55 Total: -4.72 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.87 5.07 -65.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005579684.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.936 kcal (2) G-P(sol) polarization free energy of solvation -70.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds