Wall clock time and date at job start Sat Apr 11 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.47108 * 2 1 4 4 N 1.28430 * 125.18802 * 275.10773 * 3 2 1 5 5 C 1.30844 * 110.98138 * 179.97438 * 4 3 2 6 6 C 1.39812 * 107.87124 * 359.77740 * 5 4 3 7 7 Cl 1.73598 * 127.33301 * 180.26132 * 6 5 4 8 8 C 1.36745 * 125.18193 * 95.07115 * 3 2 1 9 9 C 1.47026 * 126.91143 * 359.97438 * 8 3 2 10 10 O 1.21647 * 120.00116 * 258.18816 * 9 8 3 11 11 N 1.34783 * 119.99886 * 78.17460 * 9 8 3 12 12 C 1.46501 * 119.99703 * 174.91939 * 11 9 8 13 13 C 1.53004 * 109.46845 * 180.02562 * 12 11 9 14 14 H 1.08997 * 109.70093 * 298.65849 * 13 12 11 15 15 C 1.52760 * 109.50840 * 178.54157 * 13 12 11 16 16 C 1.53036 * 109.38206 * 185.70668 * 15 13 12 17 17 C 1.53043 * 109.54008 * 61.24172 * 16 15 13 18 18 C 1.53192 * 109.30891 * 298.63347 * 17 16 15 19 19 N 1.46927 * 109.58312 * 59.01572 * 13 12 11 20 20 C 1.36929 * 120.63192 * 353.41563 * 19 13 12 21 21 H 1.08001 * 120.00267 * 34.66026 * 20 19 13 22 22 C 1.38816 * 119.99960 * 214.66529 * 20 19 13 23 23 N 1.31621 * 119.99844 * 6.24353 * 22 20 19 24 24 Si 1.86797 * 119.99891 * 186.25333 * 22 20 19 25 25 H 1.48503 * 109.46935 * 269.99543 * 24 22 20 26 26 H 1.48499 * 109.47506 * 29.99345 * 24 22 20 27 27 H 1.48506 * 109.47121 * 149.99731 * 24 22 20 28 28 H 1.08996 * 109.47151 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46259 * 299.99568 * 1 2 3 30 30 H 1.09001 * 109.47023 * 59.99639 * 1 2 3 31 31 H 1.09001 * 109.46983 * 240.00379 * 2 1 3 32 32 H 1.08994 * 109.47633 * 120.00603 * 2 1 3 33 33 H 1.07997 * 126.06345 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00113 * 354.93187 * 11 9 8 35 35 H 1.09000 * 109.46874 * 60.00828 * 12 11 9 36 36 H 1.08996 * 109.47626 * 300.00485 * 12 11 9 37 37 H 1.08998 * 109.56445 * 65.67107 * 15 13 12 38 38 H 1.09005 * 109.35955 * 305.61784 * 15 13 12 39 39 H 1.08996 * 109.46418 * 301.22087 * 16 15 13 40 40 H 1.09009 * 109.44972 * 181.25135 * 16 15 13 41 41 H 1.09001 * 109.50223 * 178.68478 * 17 16 15 42 42 H 1.08998 * 109.49651 * 58.57853 * 17 16 15 43 43 H 1.08995 * 109.58968 * 294.84484 * 18 17 16 44 44 H 1.09004 * 109.70633 * 174.48762 * 18 17 16 45 45 H 0.96998 * 119.99584 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1770 2.1102 -1.0454 5 6 2.6262 3.2967 -0.7256 6 6 2.7679 3.3414 0.6646 7 17 3.3215 4.6781 1.6240 8 6 2.3742 2.0911 1.1133 9 6 2.3396 1.6239 2.5069 10 8 1.4310 1.9648 3.2403 11 7 3.3145 0.8176 2.9717 12 6 3.3415 0.4421 4.3875 13 6 4.5408 -0.4711 4.6501 14 1 4.4466 -1.3809 4.0572 15 6 4.5907 -0.8338 6.1332 16 6 5.8671 -1.6281 6.4190 17 6 7.0896 -0.7686 6.0888 18 6 7.0680 -0.4078 4.6002 19 7 5.7809 0.2278 4.2863 20 6 5.7381 1.4506 3.6716 21 1 4.9570 2.1534 3.9211 22 6 6.6986 1.7868 2.7275 23 7 7.5762 0.8888 2.3329 24 14 6.7458 3.5139 2.0174 25 1 5.8907 3.5740 0.8048 26 1 6.2410 4.4784 3.0274 27 1 8.1433 3.8623 1.6554 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8935 -0.5139 0.8899 33 1 2.8447 4.1004 -1.4131 34 1 3.9982 0.4861 2.3689 35 1 2.4213 -0.0840 4.6415 36 1 3.4278 1.3397 4.9999 37 1 3.7208 -1.4381 6.3906 38 1 4.5892 0.0792 6.7287 39 1 5.8798 -2.5285 5.8050 40 1 5.8930 -1.9067 7.4726 41 1 7.9984 -1.3265 6.3147 42 1 7.0646 0.1437 6.6847 43 1 7.1841 -1.3122 4.0032 44 1 7.8807 0.2837 4.3777 45 1 8.2472 1.1237 1.6730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024459473.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:37 Heat of formation + Delta-G solvation = 54.864898 kcal Electronic energy + Delta-G solvation = -29207.225045 eV Core-core repulsion = 25287.977634 eV Total energy + Delta-G solvation = -3919.247411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.44953 -39.17508 -37.70920 -36.31501 -34.56699 -34.27891 -33.09756 -31.30539 -30.19977 -29.91975 -29.76273 -26.19308 -24.96696 -24.14982 -22.56024 -22.12540 -21.45149 -20.71147 -19.68259 -19.13412 -17.96754 -16.51357 -16.12148 -15.89514 -15.67378 -15.22125 -15.04059 -14.32893 -14.22606 -14.00944 -13.93509 -13.51295 -13.40911 -13.18736 -12.94191 -12.86445 -12.47049 -12.28288 -12.11380 -11.92902 -11.69747 -11.56405 -11.40138 -11.26032 -10.76876 -10.66494 -10.61582 -10.33400 -10.29156 -10.12102 -9.98986 -9.88378 -9.54490 -9.40394 -9.13820 -8.67855 -8.50353 -8.34412 -6.63349 -5.86797 -3.39273 1.67007 1.98785 2.62888 2.65038 3.00505 3.38961 3.45998 3.50483 3.65270 4.43403 4.44305 4.73881 4.91790 4.98185 5.03910 5.19017 5.29006 5.31090 5.41338 5.45250 5.56138 5.60365 5.62891 5.64457 5.88433 5.90713 5.96628 6.07175 6.21345 6.30190 6.31806 6.35419 6.54637 6.66890 6.70260 6.72282 6.80769 6.88342 6.98085 7.36756 7.65929 7.76842 7.98344 8.02896 8.40510 8.54634 9.14654 9.73760 10.33030 11.19010 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011175 B = 0.005412 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.967447 B = 5172.401107 C = 6451.488479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.267 5.267 4 N -0.276 5.276 5 C 0.021 3.979 6 C -0.109 4.109 7 Cl -0.020 7.020 8 C 0.004 3.996 9 C 0.581 3.419 10 O -0.537 6.537 11 N -0.674 5.674 12 C 0.133 3.867 13 C 0.161 3.839 14 H 0.031 0.969 15 C -0.127 4.127 16 C -0.107 4.107 17 C -0.145 4.145 18 C 0.174 3.826 19 N -0.588 5.588 20 C -0.256 4.256 21 H 0.067 0.933 22 C 0.016 3.984 23 N -0.899 5.899 24 Si 0.881 3.119 25 H -0.269 1.269 26 H -0.276 1.276 27 H -0.295 1.295 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.191 0.809 34 H 0.418 0.582 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.086 0.914 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -3.516 -2.148 9.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.056 5.056 4 N -0.106 5.106 5 C -0.158 4.158 6 C -0.147 4.147 7 Cl 0.008 6.992 8 C -0.126 4.126 9 C 0.363 3.637 10 O -0.414 6.414 11 N -0.325 5.325 12 C 0.010 3.990 13 C 0.054 3.946 14 H 0.049 0.951 15 C -0.167 4.167 16 C -0.144 4.144 17 C -0.184 4.184 18 C 0.049 3.951 19 N -0.313 5.313 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.183 4.183 23 N -0.542 5.542 24 Si 0.710 3.290 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.221 1.221 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.208 0.792 34 H 0.257 0.743 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.104 0.896 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.907 -3.975 -2.567 10.979 hybrid contribution 0.985 1.491 0.071 1.789 sum -8.922 -2.483 -2.496 9.592 Atomic orbital electron populations 1.22174 0.93241 1.03576 1.03779 1.22061 0.96221 0.76419 1.05618 1.45641 1.45916 1.12140 1.01896 1.73130 1.19824 1.04067 1.13579 1.23423 1.03997 0.95608 0.92752 1.21167 1.10262 0.90654 0.92575 1.98354 1.87677 1.42562 1.70576 1.21363 1.08124 0.93127 0.89967 1.16825 0.82932 0.79731 0.84229 1.90803 1.35577 1.57435 1.57580 1.46090 1.27642 1.46995 1.11756 1.21411 0.97340 0.99227 0.81040 1.20650 0.87156 0.93516 0.93313 0.95122 1.21869 0.96965 0.99814 0.98075 1.21353 0.95652 0.98205 0.99226 1.22211 0.95918 0.98644 1.01654 1.20781 0.89497 0.96604 0.88258 1.44028 0.98809 1.19436 1.68991 1.19119 1.13014 0.91244 1.15145 0.91501 1.25165 0.99095 0.97348 0.96734 1.69960 1.19164 1.32573 1.32527 0.86595 0.76967 0.84872 0.80528 1.19503 1.20163 1.22134 0.89935 0.91368 0.91281 0.87526 0.88109 0.79191 0.74311 0.92165 0.91178 0.93001 0.92047 0.92911 0.93730 0.93586 0.92860 0.96450 0.89575 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.12 1.34 6.91 -4.04 -0.03 1.31 16 3 N -0.27 -4.17 3.35 -57.11 -0.19 -4.36 16 4 N -0.28 -4.40 11.89 30.61 0.36 -4.04 16 5 C 0.02 0.33 12.04 -17.38 -0.21 0.12 16 6 C -0.11 -2.00 6.89 -38.88 -0.27 -2.27 16 7 Cl -0.02 -0.38 27.85 -51.86 -1.44 -1.83 16 8 C 0.00 0.08 6.72 -82.00 -0.55 -0.47 16 9 C 0.58 11.11 6.91 -12.70 -0.09 11.02 16 10 O -0.54 -11.37 17.12 5.24 0.09 -11.28 16 11 N -0.67 -12.57 3.85 -61.51 -0.24 -12.80 16 12 C 0.13 2.38 4.44 -4.04 -0.02 2.36 16 13 C 0.16 2.94 3.01 -67.82 -0.20 2.74 16 14 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 15 C -0.13 -2.03 5.34 -26.84 -0.14 -2.18 16 16 C -0.11 -1.68 5.88 -26.69 -0.16 -1.84 16 17 C -0.15 -2.62 6.08 -26.61 -0.16 -2.78 16 18 C 0.17 3.83 5.23 -3.71 -0.02 3.81 16 19 N -0.59 -13.00 2.97 -165.02 -0.49 -13.49 16 20 C -0.26 -6.25 6.74 -15.06 -0.10 -6.36 16 21 H 0.07 1.70 6.02 -52.49 -0.32 1.39 16 22 C 0.02 0.43 5.13 -17.43 -0.09 0.34 16 23 N -0.90 -24.20 11.07 55.49 0.61 -23.58 16 24 Si 0.88 21.25 28.31 -169.99 -4.81 16.44 16 25 H -0.27 -6.36 6.98 56.52 0.39 -5.97 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.10 1.12 7.65 -51.93 -0.40 0.72 16 33 H 0.19 2.39 8.06 -52.49 -0.42 1.97 16 34 H 0.42 8.32 7.27 -40.82 -0.30 8.03 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.38 7.48 -51.93 -0.39 0.99 16 37 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 2.17 6.24 -51.93 -0.32 1.85 16 45 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -29.21 376.03 -8.88 -38.09 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.78 Total: 6.65 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.66 Total: 4.53 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.06 Total: -58.27 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.81 Total: 16.44 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.44 Total: -1.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.21 -8.88 -38.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024459473.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.959 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds